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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   ABC4   UbiA prenyltransferase family protein 
 ath-r.7   ABC4   UbiA prenyltransferase family protein 
 ath-m.9   ABC4   UbiA prenyltransferase family protein 
 ath-e.2   ABC4   UbiA prenyltransferase family protein 
 ath-m.4.bio   ABC4   UbiA prenyltransferase family protein 
 ath-m.4.hor   ABC4   UbiA prenyltransferase family protein 
 ath-m.4.lig   ABC4   UbiA prenyltransferase family protein 
 ath-m.4.str   ABC4   UbiA prenyltransferase family protein 
 ath-m.4.tis   ABC4   UbiA prenyltransferase family protein 
 bra-r.6   103829906   2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 
 bna-r.1   106435024   2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 
 bna-r.1   106449951   2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic-like 
 ghi-r.1   107908946   2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 
 ghi-r.1   107887436   2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 
 cit-r.1   102624098   2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 
 gma-u.5   100791902   2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 
 vvi-u.5   100256517   2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 
 ppo-u.5   7496610   2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 
 mtr-u.5   11410823   2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 
 sly-u.5   101248721   2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 
 sot-r.1   102602396   1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic 
 nta-r.1   107780450   2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic-like 
 nta-r.1   107819760   2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 
 osa-u.5   4331897   2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 
 zma-u.5   100285808   uncharacterized LOC100285808 
 tae-r.2   123088098   2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 
 tae-r.2   123098729   2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 
 sbi-r.1   8081915   2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 
 bdi-r.1   100820840   2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 
 cre-r.1   CHLRE_04g219787v5   uncharacterized protein 

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Top 50 coexpressed genes to ABC4 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to ABC4 (ath-u.5 coexpression data)

CoexMap"842354"


athABC4 | Entrez gene ID : 842354      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae sbi bdi cre hvu
Paralog 9 1 2 2 1 1 1 1 1 1 1 2 1 1 2 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00130 [list] [network] Ubiquinone and other terpenoid-quinone biosynthesis (40 genes)
ath01240 [list] [network] Biosynthesis of cofactors (237 genes)
GO BP
GO:0009772 [list] [network] photosynthetic electron transport in photosystem II  (5 genes)  IMP  
GO:0010236 [list] [network] plastoquinone biosynthetic process  (7 genes)  IMP  
GO:0042372 [list] [network] phylloquinone biosynthetic process  (10 genes)  IMP  
GO CC
GO:0005886 [list] [network] plasma membrane  (2598 genes)  ISM  
GO:0009507 [list] [network] chloroplast  (5014 genes)  IDA  
GO MF
GO:0046428 [list] [network] 1,4-dihydroxy-2-naphthoate polyprenyltransferase activity  (1 genes)  ISS  
Protein NP_001117518.1 [sequence] [blastp]
NP_176259.2 [sequence] [blastp]
Subcellular
localization
wolf
plas 6,  vacu 3  (predict for NP_001117518.1)
plas 6,  E.R. 1,  cyto 1,  extr 1,  vacu 1,  golg 1  (predict for NP_176259.2)
Subcellular
localization
TargetP
other 5,  chlo 5  (predict for NP_001117518.1)
mito 4,  scret 3  (predict for NP_176259.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
ABC4
ath-r.7
for
ABC4
ath-m.9
for
ABC4
ath-e.2
for
ABC4
ath-m.4.bio
for
ABC4
ath-m.4.hor
for
ABC4
ath-m.4.lig
for
ABC4
ath-m.4.str
for
ABC4
ath-m.4.tis
for
ABC4
bra-r.6
for
103829906
bna-r.1
for
106435024
bna-r.1
for
106449951
ghi-r.1
for
107908946
ghi-r.1
for
107887436
cit-r.1
for
102624098
gma-u.5
for
100791902
vvi-u.5
for
100256517
ppo-u.5
for
7496610
mtr-u.5
for
11410823
sly-u.5
for
101248721
sot-r.1
for
102602396
nta-r.1
for
107780450
nta-r.1
for
107819760
osa-u.5
for
4331897
zma-u.5
for
100285808
tae-r.2
for
123088098
tae-r.2
for
123098729
sbi-r.1
for
8081915
bdi-r.1
for
100820840
cre-r.1
for
CHLRE_04g219787v5


Ortholog ID: 6155
Species ath bra bna bna ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae hvu sbi bdi cre
Symbol ABC4 LOC103829906 LOC106435024 LOC106449951 LOC107908946 LOC107887436 LOC102624098 LOC100791902 LOC100256517 LOC7496610 LOC11410823 LOC101248721 LOC102602396 LOC107780450 LOC107819760 LOC4331897 LOC100285808 LOC123168616 LOC123449669 LOC8081915 LOC100820840 CHLRE_04g219787v5
Function* UbiA prenyltransferase family protein 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic-like 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic-like 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic uncharacterized LOC100285808 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01240 Biosynthesis of cofactors 5
bra00860 Porphyrin metabolism 4
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00630 Glyoxylate and dicarboxylate metabolism 7
bna01200 Carbon metabolism 7
bna00260 Glycine, serine and threonine metabolism 5
bna00670 One carbon pool by folate 5
bna00785 Lipoic acid metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00670 One carbon pool by folate 7
bna01200 Carbon metabolism 6
bna00260 Glycine, serine and threonine metabolism 5
bna00630 Glyoxylate and dicarboxylate metabolism 5
bna00785 Lipoic acid metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00860 Porphyrin metabolism 3
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00860 Porphyrin metabolism 2
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 3
cit01240 Biosynthesis of cofactors 3
cit01200 Carbon metabolism 2
cit00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
cit00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 5
gma01240 Biosynthesis of cofactors 3
gma00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 4
vvi03010 Ribosome 3
vvi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
vvi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00196 Photosynthesis - antenna proteins 10
ppo00195 Photosynthesis 4
ppo00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 5
sly01240 Biosynthesis of cofactors 3
sly00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 5
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
nta01240 Biosynthesis of cofactors 4
nta00460 Cyanoamino acid metabolism 3
nta00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 6
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
nta01240 Biosynthesis of cofactors 4
nta00460 Cyanoamino acid metabolism 3
nta00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 7
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
tae01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 3
hvu00710 Carbon fixation by Calvin cycle 2
hvu01200 Carbon metabolism 2
hvu00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01200 Carbon metabolism 4
sbi00710 Carbon fixation by Calvin cycle 3
sbi00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 3
bdi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bdi01240 Biosynthesis of cofactors 2
bdi00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00600 Sphingolipid metabolism 2
cre04382 Cornified envelope formation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842354 103829906 106435024 106449951 107908946 107887436 102624098 100791902 100256517 7496610 11410823 101248721 102602396 107780450 107819760 4331897 100285808 123168616 123449669 8081915 100820840 66053225
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