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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   SCO1   Translation elongation factor EFG/EF2 protein 
 ath-r.7   SCO1   Translation elongation factor EFG/EF2 protein 
 ath-m.9   SCO1   Translation elongation factor EFG/EF2 protein 
 ath-e.2   SCO1   Translation elongation factor EFG/EF2 protein 
 ath-m.4.bio   SCO1   Translation elongation factor EFG/EF2 protein 
 ath-m.4.hor   SCO1   Translation elongation factor EFG/EF2 protein 
 ath-m.4.lig   SCO1   Translation elongation factor EFG/EF2 protein 
 ath-m.4.str   SCO1   Translation elongation factor EFG/EF2 protein 
 ath-m.4.tis   SCO1   Translation elongation factor EFG/EF2 protein 
 gma-u.5   FUSA2   elongation factor G-2 
 gma-u.5   FUSA1   elongation factor G-1 
 vvi-u.5   100257414   elongation factor G-2, chloroplastic 
 ppo-u.5   7465530   elongation factor G-2, chloroplastic 
 mtr-u.5   11405549   elongation factor G-2, chloroplastic 
 sly-u.5   101245683   elongation factor G, chloroplastic 
 osa-u.5   4336525   elongation factor G-1, chloroplastic 
 zma-u.5   103646146   elongation factor G-2, chloroplastic 
 zma-u.5   103641883   elongation factor G-2, chloroplastic 

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Top 50 coexpressed genes to SCO1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SCO1 (ath-u.5 coexpression data)

CoexMap"842573"


athSCO1 | Entrez gene ID : 842573      
Species ath gma vvi ppo mtr sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 9 2 1 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009845 [list] [network] seed germination  (111 genes)  IMP  
GO:0009658 [list] [network] chloroplast organization  (197 genes)  IMP  
GO:0009791 [list] [network] post-embryonic development  (1579 genes)  IMP  
GO CC
GO:0048046 [list] [network] apoplast  (340 genes)  HDA  
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA IDA ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  HDA  
GO MF
GO:0005525 [list] [network] GTP binding  (83 genes)  ISS  
GO:0005524 [list] [network] ATP binding  (321 genes)  HDA  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_564801.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for NP_564801.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_564801.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
SCO1

.
ath-r.7
for
SCO1

.
ath-m.9
for
SCO1

.
ath-e.2
for
SCO1

.
ath-m.4.bio
for
SCO1

.
ath-m.4.hor
for
SCO1

.
ath-m.4.lig
for
SCO1

.
ath-m.4.str
for
SCO1

.
ath-m.4.tis
for
SCO1

.
gma-u.5
for
FUSA2

.
gma-u.5
for
FUSA1

.
vvi-u.5
for
100257414

.
ppo-u.5
for
7465530

.
mtr-u.5
for
11405549

.
sly-u.5
for
101245683

.
osa-u.5
for
4336525

.
zma-u.5
for
103646146

.
zma-u.5
for
103641883

.


Ortholog ID: 9858
Species ath gma gma sly osa zma zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol SCO1 FUSA2 FUSA1 LOC101245683 LOC4336525 LOC103641883 LOC103646146 LOC103838370 LOC100257414 LOC7465530 LOC11405549 LOC123046150 LOC123189925 LOC123427368 LOC107924124 LOC107904509 LOC106399314 LOC125577834 CHLRE_02g076250v5 LOC8083327 LOC102584198 LOC102624603 LOC100820968 LOC107772698 LOC107823197
Function* Translation elongation factor EFG/EF2 protein elongation factor G-2 elongation factor G-1 elongation factor G, chloroplastic elongation factor G-1, chloroplastic elongation factor G-2, chloroplastic elongation factor G-2, chloroplastic elongation factor G, chloroplastic elongation factor G-2, chloroplastic elongation factor G-2, chloroplastic elongation factor G-2, chloroplastic elongation factor G-2, chloroplastic elongation factor G-2, chloroplastic elongation factor G-2, chloroplastic elongation factor G-2, chloroplastic elongation factor G-2, chloroplastic elongation factor G, chloroplastic elongation factor G, chloroplastic uncharacterized protein elongation factor G-2, chloroplastic elongation factor G, chloroplastic elongation factor G-2, chloroplastic elongation factor G-2, chloroplastic elongation factor G-2, chloroplastic-like elongation factor G-2, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00010 Glycolysis / Gluconeogenesis 2
gma00710 Carbon fixation by Calvin cycle 2
gma01200 Carbon metabolism 2
gma01230 Biosynthesis of amino acids 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04626 Plant-pathogen interaction 2
zma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00860 Porphyrin metabolism 2
hvu01240 Biosynthesis of cofactors 2
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00450 Selenocompound metabolism 2
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00450 Selenocompound metabolism 2
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
bna03060 Protein export 3
bna00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
bna00620 Pyruvate metabolism 2
bna03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00710 Carbon fixation by Calvin cycle 4
cre01200 Carbon metabolism 4
cre01230 Biosynthesis of amino acids 3
cre00190 Oxidative phosphorylation 3
cre00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00630 Glyoxylate and dicarboxylate metabolism 2
cit04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04626 Plant-pathogen interaction 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842573 102663021 100797377 101245683 4336525 103641883 103646146 103838370 100257414 7465530 11405549 123046150 123189925 123427368 107924124 107904509 106399314 125577834 5727209 8083327 102584198 102624603 100820968 107772698 107823197
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