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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   SIGA   sigma factor A 
 ath-r.7   SIGA   sigma factor A 
 ath-m.9   SIGA   sigma factor A 
 ath-e.2   SIGA   sigma factor A 
 ath-m.4.bio   SIGA   sigma factor A 
 ath-m.4.hor   SIGA   sigma factor A 
 ath-m.4.lig   SIGA   sigma factor A 
 ath-m.4.str   SIGA   sigma factor A 
 ath-m.4.tis   SIGA   sigma factor A 
 gma-u.5   100801884   RNA polymerase sigma factor sigA 
 gma-u.5   100794548   RNA polymerase sigma factor sigA 
 vvi-u.5   100256191   RNA polymerase sigma factor sigA 
 ppo-u.5   7493891   RNA polymerase sigma factor sigA 
 ppo-u.5   7459204   RNA polymerase sigma factor sigA 
 mtr-u.5   25480544   RNA polymerase sigma factor sigA 
 sly-u.5   101263418   RNA polymerase sigma factor sigA 
 sly-u.5   101252856   RNA polymerase sigma factor sigA 
 osa-u.5   4344738   RNA polymerase sigma factor sigA-like 
 zma-u.5   541691   RNA polymerase sigma factor sigA 
 zma-u.5   541692   sigma factor of plastid RNA polymerase 

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Top 50 coexpressed genes to SIGA (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SIGA (ath-u.5 coexpression data)

CoexMap"842794"


athSIGA | Entrez gene ID : 842794      
Species ath gma vvi ppo mtr sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 9 2 1 2 1 2 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0071461 [list] [network] cellular response to redox state  (2 genes)  IDA  
GO:0080005 [list] [network] photosystem stoichiometry adjustment  (3 genes)  IDA  
GO:0006352 [list] [network] DNA-templated transcription initiation  (35 genes)  IDA TAS  
GO:0071482 [list] [network] cellular response to light stimulus  (105 genes)  IEP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  IDA  
GO:2001141 [list] [network] regulation of RNA biosynthetic process  (1621 genes)  IMP  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  IDA ISM  
GO MF
GO:0016987 [list] [network] sigma factor activity  (6 genes)  IMP ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001319322.1 [sequence] [blastp]
NP_176666.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  chlo 3,  mito 1  (predict for NP_001319322.1)
cyto 6,  chlo 1,  mito 1,  chlo_mito 1  (predict for NP_176666.1)
Subcellular
localization
TargetP
other 3  (predict for NP_001319322.1)
other 3  (predict for NP_176666.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
SIGA

.
ath-r.7
for
SIGA

.
ath-m.9
for
SIGA

.
ath-e.2
for
SIGA

.
ath-m.4.bio
for
SIGA

.
ath-m.4.hor
for
SIGA

.
ath-m.4.lig
for
SIGA

.
ath-m.4.str
for
SIGA

.
ath-m.4.tis
for
SIGA

.
gma-u.5
for
100801884

.
gma-u.5
for
100794548

.
vvi-u.5
for
100256191

.
ppo-u.5
for
7493891

.
ppo-u.5
for
7459204

.
mtr-u.5
for
25480544

.
sly-u.5
for
101263418

.
sly-u.5
for
101252856

.
osa-u.5
for
4344738

.
zma-u.5
for
541691

.
zma-u.5
for
541692

.


Ortholog ID: 7086
Species ath gma gma sly sly osa zma zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna sbi sot sot cit bdi nta nta
Symbol SIGA LOC100801884 LOC100794548 LOC101263418 LOC101252856 LOC4344738 LOC541691 LOC541692 LOC103853304 LOC100256191 LOC7493891 LOC7459204 LOC25480544 LOC542980 LOC123157122 LOC123407383 LOC107913567 LOC107938687 LOC106390364 LOC106388196 LOC8080867 LOC102592902 LOC102585592 LOC102606892 LOC100827900 LOC107804695 LOC107805048
Function* sigma factor A RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA-like RNA polymerase sigma factor sigA sigma factor of plastid RNA polymerase RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA-like RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA-like RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 5
ath00900 Terpenoid backbone biosynthesis 2
ath00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 8
gma00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00710 Carbon fixation by Calvin cycle 8
gma01200 Carbon metabolism 8
gma00860 Porphyrin metabolism 5
gma00010 Glycolysis / Gluconeogenesis 3
gma00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 5
sly00710 Carbon fixation by Calvin cycle 4
sly01230 Biosynthesis of amino acids 3
sly00010 Glycolysis / Gluconeogenesis 2
sly00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00860 Porphyrin metabolism 4
osa00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 8
ppo00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00196 Photosynthesis - antenna proteins 8
ppo00195 Photosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00196 Photosynthesis - antenna proteins 4
mtr00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 5
ghi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01240 Biosynthesis of cofactors 2
sot00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00196 Photosynthesis - antenna proteins 5
cit00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00860 Porphyrin metabolism 4
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 8
nta00195 Photosynthesis 2
nta00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842794 100801884 100794548 101263418 101252856 4344738 541691 541692 103853304 100256191 7493891 7459204 25480544 542980 123157122 123407383 107913567 107938687 106390364 106388196 8080867 102592902 102585592 102606892 100827900 107804695 107805048
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