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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   GAD2   glutamate decarboxylase 2 
 ath-r.7   GAD2   glutamate decarboxylase 2 
 ath-m.9   GAD2   glutamate decarboxylase 2 
 ath-e.2   GAD2   glutamate decarboxylase 2 
 ath-m.4.bio   GAD2   glutamate decarboxylase 2 
 ath-m.4.hor   GAD2   glutamate decarboxylase 2 
 ath-m.4.lig   GAD2   glutamate decarboxylase 2 
 ath-m.4.str   GAD2   glutamate decarboxylase 2 
 ath-m.4.tis   GAD2   glutamate decarboxylase 2 
 ath-u.5   GAD   glutamate decarboxylase 
 ath-u.5   GAD4   glutamate decarboxylase 4 
 gma-u.5   100812201   glutamate decarboxylase 1-like 
 gma-u.5   100781791   glutamate decarboxylase 1 
 gma-u.5   100782330   glutamate decarboxylase 1 
 vvi-u.5   100266215   glutamate decarboxylase 1 
 vvi-u.5   100265999   glutamate decarboxylase 
 vvi-u.5   100261008   glutamate decarboxylase 4 
 ppo-u.5   7457832   glutamate decarboxylase 4 
 ppo-u.5   18106489   glutamate decarboxylase 
 ppo-u.5   7494518   glutamate decarboxylase 1 
 mtr-u.5   25496687   glutamate decarboxylase 
 mtr-u.5   120577330   glutamate decarboxylase 4 
 mtr-u.5   11408278   glutamate decarboxylase 1 
 sly-u.5   GAD3   glutamate decarboxylase isoform3 
 sly-u.5   GAD2   glutamate decarboxylase isoform2 
 sly-u.5   101251185   glutamate decarboxylase-like 
 osa-u.5   4333932   glutamate decarboxylase 1 
 osa-u.5   4345787   glutamate decarboxylase 1 
 osa-u.5   4335977   glutamate decarboxylase 4 
 zma-u.5   100381655   Glutamate decarboxylase 1 
 zma-u.5   100284551   uncharacterized LOC100284551 
 zma-u.5   100273302   Pyridoxal phosphate (PLP)-dependent transferase superfamily protein 

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Top 50 coexpressed genes to GAD2 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to GAD2 (ath-u.5 coexpression data)

CoexMap"842908"


athGAD2 | Entrez gene ID : 842908      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 11 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00250 [list] [network] Alanine, aspartate and glutamate metabolism (51 genes)
ath00410 [list] [network] beta-Alanine metabolism (47 genes)
ath00430 [list] [network] Taurine and hypotaurine metabolism (11 genes)
ath00650 [list] [network] Butanoate metabolism (20 genes)
GO BP
GO:0006536 [list] [network] glutamate metabolic process  (19 genes)  IDA IEA  
GO CC
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  HDA  
GO MF
GO:0004351 [list] [network] glutamate decarboxylase activity  (3 genes)  IDA  
GO:0005516 [list] [network] calmodulin binding  (128 genes)  TAS  
Protein NP_001117556.1 [sequence] [blastp]
NP_001319328.1 [sequence] [blastp]
NP_001320515.1 [sequence] [blastp]
NP_176771.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 8,  nucl 1,  plas 1,  cysk 1,  cysk_nucl 1,  nucl_plas 1,  cysk_plas 1  (predict for NP_001117556.1)
cyto 3,  mito 3,  chlo 2,  nucl 2  (predict for NP_001319328.1)
cyto 3,  mito 3,  chlo 2,  nucl 2  (predict for NP_001320515.1)
cyto 3,  mito 3,  chlo 2,  nucl 2  (predict for NP_176771.2)
Subcellular
localization
TargetP
other 8  (predict for NP_001117556.1)
mito 6,  other 5  (predict for NP_001319328.1)
mito 6,  other 5  (predict for NP_001320515.1)
mito 6,  other 5  (predict for NP_176771.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
GAD2
ath-r.7
for
GAD2
ath-m.9
for
GAD2
ath-e.2
for
GAD2
ath-m.4.bio
for
GAD2
ath-m.4.hor
for
GAD2
ath-m.4.lig
for
GAD2
ath-m.4.str
for
GAD2
ath-m.4.tis
for
GAD2
ath-u.5
for
GAD
ath-u.5
for
GAD4
gma-u.5
for
100812201
gma-u.5
for
100781791
gma-u.5
for
100782330
vvi-u.5
for
100266215
vvi-u.5
for
100265999
vvi-u.5
for
100261008
ppo-u.5
for
7457832
ppo-u.5
for
18106489
ppo-u.5
for
7494518
mtr-u.5
for
25496687
mtr-u.5
for
120577330
mtr-u.5
for
11408278
sly-u.5
for
GAD3
sly-u.5
for
GAD2
sly-u.5
for
101251185
osa-u.5
for
4333932
osa-u.5
for
4345787
osa-u.5
for
4335977
zma-u.5
for
100381655
zma-u.5
for
100284551
zma-u.5
for
100273302


Ortholog ID: 523
Species ath bra bna bna ghi ghi cit cit gma gma vvi vvi ppo mtr mtr sly sly sot sot nta nta osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi
Symbol GAD LOC103831077 LOC106426880 LOC106387720 LOC121224454 LOC107948303 LOC102612842 LOC102611084 LOC100796475 LOC100796533 LOC100265999 LOC100261008 LOC7485189 LOC120577330 LOC25496687 GAD2 GAD3 LOC102581388 LOC102594980 LOC107819266 LOC107804984 LOC4335973 LOC4335977 LOC100191549 LOC100284551 LOC123075872 LOC123066916 LOC123447564 LOC123441085 LOC8065836 LOC8063364 LOC100831497 LOC100827187
Function* glutamate decarboxylase glutamate decarboxylase 2 glutamate decarboxylase 2 glutamate decarboxylase 1 glutamate decarboxylase glutamate decarboxylase 4 glutamate decarboxylase-like glutamate decarboxylase 5-like glutamate decarboxylase glutamate decarboxylase glutamate decarboxylase glutamate decarboxylase 4 glutamate decarboxylase glutamate decarboxylase 4 glutamate decarboxylase glutamate decarboxylase isoform2 glutamate decarboxylase isoform3 glutamate decarboxylase glutamate decarboxylase-like glutamate decarboxylase 4-like glutamate decarboxylase-like glutamate decarboxylase glutamate decarboxylase 4 uncharacterized LOC100191549 uncharacterized LOC100284551 glutamate decarboxylase glutamate decarboxylase glutamate decarboxylase 1-like glutamate decarboxylase-like glutamate decarboxylase glutamate decarboxylase 1 glutamate decarboxylase glutamate decarboxylase
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath02010 ABC transporters 2
ath00940 Phenylpropanoid biosynthesis 2
ath00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00410 beta-Alanine metabolism 3
bra00190 Oxidative phosphorylation 3
bra04145 Phagosome 3
bra00330 Arginine and proline metabolism 2
bra00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00250 Alanine, aspartate and glutamate metabolism 6
bna00650 Butanoate metabolism 6
bna00410 beta-Alanine metabolism 4
bna00430 Taurine and hypotaurine metabolism 4
bna00904 Diterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00250 Alanine, aspartate and glutamate metabolism 7
bna00410 beta-Alanine metabolism 7
bna00430 Taurine and hypotaurine metabolism 7
bna00650 Butanoate metabolism 7
bna00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00250 Alanine, aspartate and glutamate metabolism 2
ghi00410 beta-Alanine metabolism 2
ghi00430 Taurine and hypotaurine metabolism 2
ghi00650 Butanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00250 Alanine, aspartate and glutamate metabolism 6
ghi00410 beta-Alanine metabolism 6
ghi00430 Taurine and hypotaurine metabolism 6
ghi00650 Butanoate metabolism 6
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04626 Plant-pathogen interaction 3
cit04120 Ubiquitin mediated proteolysis 3
cit04016 MAPK signaling pathway - plant 2
cit04075 Plant hormone signal transduction 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00250 Alanine, aspartate and glutamate metabolism 2
gma00410 beta-Alanine metabolism 2
gma00430 Taurine and hypotaurine metabolism 2
gma00650 Butanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00250 Alanine, aspartate and glutamate metabolism 2
gma00410 beta-Alanine metabolism 2
gma00430 Taurine and hypotaurine metabolism 2
gma00650 Butanoate metabolism 2
gma00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 2
vvi00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00410 beta-Alanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01240 Biosynthesis of cofactors 2
mtr00410 beta-Alanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00250 Alanine, aspartate and glutamate metabolism 2
sot00650 Butanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00250 Alanine, aspartate and glutamate metabolism 2
sot00410 beta-Alanine metabolism 2
sot00430 Taurine and hypotaurine metabolism 2
sot00650 Butanoate metabolism 2
sot00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00250 Alanine, aspartate and glutamate metabolism 2
nta00410 beta-Alanine metabolism 2
nta00430 Taurine and hypotaurine metabolism 2
nta00650 Butanoate metabolism 2
nta00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00250 Alanine, aspartate and glutamate metabolism 4
nta00410 beta-Alanine metabolism 4
nta00430 Taurine and hypotaurine metabolism 4
nta00650 Butanoate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00250 Alanine, aspartate and glutamate metabolism 2
zma00410 beta-Alanine metabolism 2
zma00430 Taurine and hypotaurine metabolism 2
zma00650 Butanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00250 Alanine, aspartate and glutamate metabolism 2
zma00410 beta-Alanine metabolism 2
zma00430 Taurine and hypotaurine metabolism 2
zma00650 Butanoate metabolism 2
zma00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00250 Alanine, aspartate and glutamate metabolism 3
tae00410 beta-Alanine metabolism 3
tae00430 Taurine and hypotaurine metabolism 3
tae00650 Butanoate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00250 Alanine, aspartate and glutamate metabolism 3
tae00410 beta-Alanine metabolism 3
tae00430 Taurine and hypotaurine metabolism 3
tae00650 Butanoate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00250 Alanine, aspartate and glutamate metabolism 4
sbi00410 beta-Alanine metabolism 4
sbi00430 Taurine and hypotaurine metabolism 4
sbi00650 Butanoate metabolism 4
sbi00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00250 Alanine, aspartate and glutamate metabolism 4
sbi00410 beta-Alanine metabolism 4
sbi00430 Taurine and hypotaurine metabolism 4
sbi00650 Butanoate metabolism 4
sbi00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00250 Alanine, aspartate and glutamate metabolism 4
bdi00410 beta-Alanine metabolism 4
bdi00430 Taurine and hypotaurine metabolism 4
bdi00650 Butanoate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 4
bdi04626 Plant-pathogen interaction 2
bdi00564 Glycerophospholipid metabolism 2
bdi00565 Ether lipid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831599 103831077 106426880 106387720 121224454 107948303 102612842 102611084 100796475 100796533 100265999 100261008 7485189 120577330 25496687 100147722 100147723 102581388 102594980 107819266 107804984 4335973 4335977 100191549 100284551 123075872 123066916 123447564 123441085 8065836 8063364 100831497 100827187
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