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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PXMT1   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 ath-r.7   PXMT1   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 ath-e.2   PXMT1   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 ath-u.5   FAMT   farnesoic acid carboxyl-O-methyltransferase 
 ath-u.5   AT3G44870   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 bra-r.6   103872070   paraxanthine methyltransferase 1-like 
 bra-r.6   103852328   farnesoic acid carboxyl-O-methyltransferase 
 bra-r.6   103846030   farnesoic acid carboxyl-O-methyltransferase 
 bna-r.1   106419888   paraxanthine methyltransferase 1-like 
 bna-r.1   106413711   farnesoic acid carboxyl-O-methyltransferase-like 
 bna-r.1   106411968   farnesoic acid carboxyl-O-methyltransferase 

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Top 50 coexpressed genes to PXMT1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PXMT1 (ath-u.5 coexpression data)

CoexMap"842988"


athPXMT1 | Entrez gene ID : 842988      
Species ath bra bna zma ghi nta vvi osa sot hvu gma tae sly bdi ppo cit sbi mtr cre
Paralog 5 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0002238 [list] [network] response to molecule of fungal origin  (21 genes)  IEP  
GO:0080027 [list] [network] response to herbivore  (24 genes)  IEP  
GO:0035195 [list] [network] miRNA-mediated post-transcriptional gene silencing  (70 genes)  IEP  
GO:2000280 [list] [network] regulation of root development  (79 genes)  IMP  
GO:0010029 [list] [network] regulation of seed germination  (105 genes)  IMP  
GO:1900140 [list] [network] regulation of seedling development  (112 genes)  IMP  
GO:0009751 [list] [network] response to salicylic acid  (179 genes)  IEP  
GO:0042742 [list] [network] defense response to bacterium  (363 genes)  IMP  
GO:0009617 [list] [network] response to bacterium  (500 genes)  IEP  
GO:0009416 [list] [network] response to light stimulus  (776 genes)  IEP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0008757 [list] [network] S-adenosylmethionine-dependent methyltransferase activity  (128 genes)  IDA  
Protein NP_564881.3 [sequence] [blastp]
NP_974096.1 [sequence] [blastp]
Subcellular
localization
wolf
cysk 7,  cyto 2  (predict for NP_564881.3)
nucl 4,  cyto 3,  chlo 1,  cysk 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_974096.1)
Subcellular
localization
TargetP
other 9  (predict for NP_564881.3)
other 9  (predict for NP_974096.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PXMT1
ath-r.7
for
PXMT1
ath-e.2
for
PXMT1
ath-u.5
for
FAMT
ath-u.5
for
AT3G44870
bra-r.6
for
103872070
bra-r.6
for
103852328
bra-r.6
for
103846030
bna-r.1
for
106419888
bna-r.1
for
106413711
bna-r.1
for
106411968


Ortholog ID: 11328
Species ath ath bra bra bna bna bna
Symbol FAMT AT3G44870 LOC103872070 LOC103852328 LOC106404987 LOC106357762 LOC106357119
Function* farnesoic acid carboxyl-O-methyltransferase S-adenosyl-L-methionine-dependent methyltransferases superfamily protein paraxanthine methyltransferase 1-like farnesoic acid carboxyl-O-methyltransferase paraxanthine methyltransferase 1-like farnesoic acid carboxyl-O-methyltransferase-like probable S-adenosylmethionine-dependent methyltransferase At5g38100
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00592 alpha-Linolenic acid metabolism 4
ath00904 Diterpenoid biosynthesis 2
ath00591 Linoleic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra02010 ABC transporters 3
bra00460 Cyanoamino acid metabolism 2
bra00500 Starch and sucrose metabolism 2
bra00999 Biosynthesis of various plant secondary metabolites 2
bra00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 4
bna00030 Pentose phosphate pathway 2
bna01200 Carbon metabolism 2
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00030 Pentose phosphate pathway 2
bna01200 Carbon metabolism 2
bna00500 Starch and sucrose metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 823620 823621 103872070 103852328 106404987 106357762 106357119
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