ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	PG2	polygalacturonase 2
ath-r.7	PG2	polygalacturonase 2
ath-m.9	PG2	polygalacturonase 2
ath-e.2	PG2	polygalacturonase 2
ath-m.4.bio	PG2	polygalacturonase 2
ath-m.4.hor	PG2	polygalacturonase 2
ath-m.4.lig	PG2	polygalacturonase 2
ath-m.4.str	PG2	polygalacturonase 2
ath-m.4.tis	PG2	polygalacturonase 2
ath-u.5	JP630	BURP domain-containing protein
ath-u.5	PG1	polygalacturonase 1
bra-r.6	103838513	polygalacturonase 1 beta-like protein 2
bra-r.6	103831568	polygalacturonase 1 beta-like protein 3
bna-r.1	106418190	polygalacturonase 1 beta-like protein 3
bna-r.1	106381970	polygalacturonase 1 beta-like protein 2
bna-r.1	106429090	polygalacturonase 1 beta-like protein 2
ghi-r.1	121220259	polygalacturonase 1 beta-like protein 3
ghi-r.1	107940877	polygalacturonase 1 beta-like protein 3
ghi-r.1	107910159	polygalacturonase 1 beta-like protein 3
cit-r.1	102612793	polygalacturonase 1 beta-like protein 3
cit-r.1	102613096	polygalacturonase 1 beta-like protein 3
gma-u.5	100776642	polygalacturonase 1 beta-like protein 3
gma-u.5	100784264	polygalacturonase-1 non-catalytic subunit beta
gma-u.5	100787394	polygalacturonase-1 non-catalytic subunit beta
vvi-u.5	100263873	polygalacturonase 1 beta-like protein 3
vvi-u.5	100258559	polygalacturonase 1 beta-like protein 1
vvi-u.5	100248300	polygalacturonase 1 beta-like protein 3
ppo-u.5	112323253	polygalacturonase 1 beta-like protein 3
ppo-u.5	7473225	polygalacturonase 1 beta-like protein 3
ppo-u.5	7458030	polygalacturonase 1 beta-like protein 3
mtr-u.5	11410657	polygalacturonase 1 beta-like protein 3
sly-u.5	101252390	polygalacturonase-1 non-catalytic subunit beta-like
sly-u.5	AROGP2	polygalacturonase non-catalytic subunit AroGP2
sly-u.5	101247712	polygalacturonase 1 beta-like protein 3
sot-r.1	102602358	polygalacturonase non-catalytic subunit AroGP2-like
sot-r.1	102603032	polygalacturonase non-catalytic subunit AroGP3-like
sot-r.1	102602029	polygalacturonase non-catalytic subunit AroGP2
nta-r.1	107820175	polygalacturonase non-catalytic subunit AroGP3
nta-r.1	107829501	polygalacturonase-1 non-catalytic subunit beta-like
nta-r.1	107820174	polygalacturonase non-catalytic subunit AroGP3-like
osa-u.5	4348595	BURP domain-containing protein 16-like
osa-u.5	4345440	BURP domain-containing protein 12-like
zma-u.5	103632591	BURP domain-containing protein 14-like
zma-u.5	100279594	uncharacterized LOC100279594
tae-r.2	123131613	BURP domain-containing protein 14-like
tae-r.2	123086702	BURP domain-containing protein 12
tae-r.2	123087973	BURP domain-containing protein 12
hvu-r.1	123451227	BURP domain-containing protein 12-like
hvu-r.1	123411909	BURP domain-containing protein 12-like
sbi-r.1	8073509	BURP domain-containing protein 12
bdi-r.1	100825122	BURP domain-containing protein 12

Top 50 coexpressed genes to PG2 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to PG2 (ath-u.5 coexpression data)

CoexMap"843373"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0042547 [list] [network] cell wall modification involved in multidimensional cell growth	(11 genes)	IMP
GO:0009827 [list] [network] plant-type cell wall modification	(68 genes)	IMP

GO CC

GO:0009505 [list] [network] plant-type cell wall	(504 genes)	IDA
GO:0005576 [list] [network] extracellular region	(3158 genes)	ISM

GO MF

Protein

NP_001185361.1 [sequence] [blastp]
NP_177194.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 3, extr 2, vacu 2, golg 2	(predict for NP_001185361.1)
chlo 3, extr 2, vacu 2, golg 2	(predict for NP_177194.1)

Subcellular
localization
TargetP

scret 9	(predict for NP_001185361.1)
scret 9	(predict for NP_177194.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for PG2	ath-r.7 for PG2	ath-m.9 for PG2	ath-e.2 for PG2	ath-m.4.bio for PG2	ath-m.4.hor for PG2	ath-m.4.lig for PG2	ath-m.4.str for PG2	ath-m.4.tis for PG2	ath-u.5 for JP630	ath-u.5 for PG1	bra-r.6 for 103838513	bra-r.6 for 103831568	bna-r.1 for 106418190	bna-r.1 for 106381970	bna-r.1 for 106429090	ghi-r.1 for 121220259	ghi-r.1 for 107940877	ghi-r.1 for 107910159	cit-r.1 for 102612793	cit-r.1 for 102613096	gma-u.5 for 100776642	gma-u.5 for 100784264	gma-u.5 for 100787394	vvi-u.5 for 100263873	vvi-u.5 for 100258559	vvi-u.5 for 100248300	ppo-u.5 for 112323253	ppo-u.5 for 7473225	ppo-u.5 for 7458030	mtr-u.5 for 11410657	sly-u.5 for 101252390	sly-u.5 for AROGP2	sly-u.5 for 101247712	sot-r.1 for 102602358	sot-r.1 for 102603032	sot-r.1 for 102602029	nta-r.1 for 107820175	nta-r.1 for 107829501	nta-r.1 for 107820174	osa-u.5 for 4348595	osa-u.5 for 4345440	zma-u.5 for 103632591	zma-u.5 for 100279594	tae-r.2 for 123131613	tae-r.2 for 123086702	tae-r.2 for 123087973	hvu-r.1 for 123451227	hvu-r.1 for 123411909	sbi-r.1 for 8073509	bdi-r.1 for 100825122

Ortholog

Ortholog ID: 1288

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

PG2

JP630

PG1

AROGP3

Function^*

polygalacturonase 2

BURP domain-containing protein

polygalacturonase 1

polygalacturonase 1 beta-like protein 2

polygalacturonase 1 beta-like protein 3

polygalacturonase 1 beta-like protein 1

polygalacturonase 1 beta-like protein 3

polygalacturonase 1 beta-like protein 1

polygalacturonase-1 non-catalytic subunit beta-like

polygalacturonase 1 beta-like protein 3

polygalacturonase non-catalytic subunit AroGP3

polygalacturonase non-catalytic subunit AroGP3-like

polygalacturonase non-catalytic subunit AroGP2

probable polygalacturonase non-catalytic subunit JP650

polygalacturonase non-catalytic subunit AroGP3-like

polygalacturonase 1 beta-like protein 2

BURP domain-containing protein 16-like

BURP domain-containing protein 12-like

BURP domain-containing protein 14-like

uncharacterized LOC100279594

BURP domain-containing protein 12

BURP domain-containing protein 14

BURP domain-containing protein 12-like

BURP domain-containing protein 12

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi02010	ABC transporters	2
ghi04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi02010	ABC transporters	2
ghi04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00040	Pentose and glucuronate interconversions	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00564	Glycerophospholipid metabolism	2
ppo00565	Ether lipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01240	Biosynthesis of cofactors	3
ppo00130	Ubiquinone and other terpenoid-quinone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	4
nta00520	Amino sugar and nucleotide sugar metabolism	3
nta01250	Biosynthesis of nucleotide sugars	3
nta04145	Phagosome	2
nta04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04016	MAPK signaling pathway - plant	3
osa04075	Plant hormone signal transduction	3
osa04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00062	Fatty acid elongation	3
tae04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00062	Fatty acid elongation	3
tae04626	Plant-pathogen interaction	3
tae00073	Cutin, suberine and wax biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00910	Nitrogen metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00940	Phenylpropanoid biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi02010	ABC transporters	2
bdi04981	Folate transport and metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

843373

838987

842334

103838513

103831568

106418190

125576317

106353791

107940877

107910159

107940699

102612793

102613096

100811362

102669155

100263873

100258559

100248300

112323253

7473225

7458030

11442190

101252390

101247712

101251775

102603032

102602029

102593329

107820174

107815214

107803404

4348595

4345440

103632591

100279594

123150607

123167576

123142970

123451227

123411909

8073509

100825122

The preparation time of this page was 0.1 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	11	2	3	3	2	3	3	3	1	3	3	3	2	2	3	2	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to PG2 (ath-u.5 coexpression data)

Top 50 enrichment test to PG2 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**