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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   GA2   Terpenoid cyclases/Protein prenyltransferases superfamily protein 
 ath-r.7   GA2   Terpenoid cyclases/Protein prenyltransferases superfamily protein 
 ath-m.9   GA2   Terpenoid cyclases/Protein prenyltransferases superfamily protein 
 ath-e.2   GA2   Terpenoid cyclases/Protein prenyltransferases superfamily protein 
 ath-m.4.bio   GA2   Terpenoid cyclases/Protein prenyltransferases superfamily protein 
 ath-m.4.hor   GA2   Terpenoid cyclases/Protein prenyltransferases superfamily protein 
 ath-m.4.lig   GA2   Terpenoid cyclases/Protein prenyltransferases superfamily protein 
 ath-m.4.str   GA2   Terpenoid cyclases/Protein prenyltransferases superfamily protein 
 ath-m.4.tis   GA2   Terpenoid cyclases/Protein prenyltransferases superfamily protein 
 bra-r.6   103832422   ent-kaur-16-ene synthase, chloroplastic 
 bna-r.1   106430723   ent-kaur-16-ene synthase, chloroplastic 
 bna-r.1   106354788   ent-kaur-16-ene synthase, chloroplastic 
 ghi-r.1   107921168   ent-kaur-16-ene synthase, chloroplastic-like 
 ghi-r.1   107916812   ent-kaur-16-ene synthase, chloroplastic 
 cit-r.1   102609462   ent-kaurene synthase TSP4, chloroplastic 
 gma-u.5   DW1   ent-kaurene synthase 
 vvi-u.5   100267397   ent-kaurene synthase TSP4, chloroplastic 
 ppo-u.5   18101433   ent-kaur-16-ene synthase, chloroplastic 
 mtr-u.5   11446526   ent-kaurene synthase, chloroplastic 
 mtr-u.5   25486907   ent-kaurene synthase TSP4, chloroplastic 
 sly-u.5   TPS24   ent-kaurene synthase 
 sot-r.1   102602928   ent-kaur-16-ene synthase, chloroplastic 
 nta-r.1   107825637   ent-kaurene synthase TSP4, chloroplastic 
 nta-r.1   107795749   ent-kaurene synthase TSP4, chloroplastic 
 osa-u.5   4352248   ent-sandaracopimara-8(14),15-diene synthase-like 
 osa-u.5   4350502   stemar-13-ene synthase-like 
 zma-u.5   103645955   ent-kaur-16-ene synthase, chloroplastic 
 zma-u.5   109943181   ent-kaur-16-ene synthase, chloroplastic 
 tae-r.2   123048259   9-beta-pimara-7,15-diene synthase, chloroplastic 
 hvu-r.1   123397496   ent-kaur-16-ene synthase, chloroplastic-like 
 hvu-r.1   123429122   ent-kaur-16-ene synthase, chloroplastic-like 
 hvu-r.1   123427634   ent-kaur-16-ene synthase, chloroplastic 
 sbi-r.1   8063956   ent-kaur-16-ene synthase, chloroplastic 
 bdi-r.1   100827748   ent-kaur-16-ene synthase, chloroplastic 
 bdi-r.1   100829880   ent-kaur-16-ene synthase, chloroplastic 
 bdi-r.1   100828967   ent-kaur-16-ene synthase, chloroplastic 

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Top 50 coexpressed genes to GA2 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to GA2 (ath-u.5 coexpression data)

CoexMap"844284"


athGA2 | Entrez gene ID : 844284      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 1 1 1 2 1 1 2 2 2 1 3 1 3 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00904 [list] [network] Diterpenoid biosynthesis (25 genes)
GO BP
GO:0009686 [list] [network] gibberellin biosynthetic process  (20 genes)  IDA IGI  
GO:0009740 [list] [network] gibberellic acid mediated signaling pathway  (41 genes)  TAS  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM TAS  
GO:0009536 [list] [network] plastid  (5443 genes)  NAS TAS  
GO MF
GO:0009899 [list] [network] ent-kaurene synthase activity  (1 genes)  IDA  
Protein NP_178064.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  extr 2,  nucl 1,  cysk_nucl 1,  plas 1,  vacu 1  (predict for NP_178064.1)
Subcellular
localization
TargetP
chlo 6  (predict for NP_178064.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
GA2
ath-r.7
for
GA2
ath-m.9
for
GA2
ath-e.2
for
GA2
ath-m.4.bio
for
GA2
ath-m.4.hor
for
GA2
ath-m.4.lig
for
GA2
ath-m.4.str
for
GA2
ath-m.4.tis
for
GA2
bra-r.6
for
103832422
bna-r.1
for
106430723
bna-r.1
for
106354788
ghi-r.1
for
107921168
ghi-r.1
for
107916812
cit-r.1
for
102609462
gma-u.5
for
DW1
vvi-u.5
for
100267397
ppo-u.5
for
18101433
mtr-u.5
for
11446526
mtr-u.5
for
25486907
sly-u.5
for
TPS24
sot-r.1
for
102602928
nta-r.1
for
107825637
nta-r.1
for
107795749
osa-u.5
for
4352248
osa-u.5
for
4350502
zma-u.5
for
103645955
zma-u.5
for
109943181
tae-r.2
for
123048259
hvu-r.1
for
123397496
hvu-r.1
for
123429122
hvu-r.1
for
123427634
sbi-r.1
for
8063956
bdi-r.1
for
100827748
bdi-r.1
for
100829880
bdi-r.1
for
100828967


Ortholog ID: 2304
Species ath bra bna bna ghi ghi cit gma vvi ppo mtr mtr sly sot nta nta osa osa osa zma zma hvu hvu hvu sbi bdi bdi bdi
Symbol GA2 LOC103832422 LOC106430723 LOC106354788 LOC107921168 LOC107916812 LOC102609462 DW1 LOC100267397 LOC18101433 LOC11446526 LOC25486907 TPS24 LOC102602928 LOC107825637 LOC107795749 LOC4350502 LOC4329729 LOC4329728 LOC103645955 LOC109943181 LOC123429122 LOC123427634 LOC123427638 LOC8063956 LOC100827748 LOC100829880 LOC100828967
Function* Terpenoid cyclases/Protein prenyltransferases superfamily protein ent-kaur-16-ene synthase, chloroplastic ent-kaur-16-ene synthase, chloroplastic ent-kaur-16-ene synthase, chloroplastic ent-kaur-16-ene synthase, chloroplastic-like ent-kaur-16-ene synthase, chloroplastic ent-kaurene synthase TSP4, chloroplastic ent-kaurene synthase ent-kaurene synthase TSP4, chloroplastic ent-kaur-16-ene synthase, chloroplastic ent-kaurene synthase, chloroplastic ent-kaurene synthase TSP4, chloroplastic ent-kaurene synthase ent-kaur-16-ene synthase, chloroplastic ent-kaurene synthase TSP4, chloroplastic ent-kaurene synthase TSP4, chloroplastic stemar-13-ene synthase-like ent-isokaur-15-ene synthase-like ent-pimara-8(14),15-diene synthase-like ent-kaur-16-ene synthase, chloroplastic ent-kaur-16-ene synthase, chloroplastic ent-kaur-16-ene synthase, chloroplastic-like ent-kaur-16-ene synthase, chloroplastic ent-kaur-16-ene synthase, chloroplastic-like ent-kaur-16-ene synthase, chloroplastic ent-kaur-16-ene synthase, chloroplastic ent-kaur-16-ene synthase, chloroplastic ent-kaur-16-ene synthase, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 7
bna00250 Alanine, aspartate and glutamate metabolism 4
bna00650 Butanoate metabolism 4
bna00410 beta-Alanine metabolism 2
bna00430 Taurine and hypotaurine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 7
bna00250 Alanine, aspartate and glutamate metabolism 4
bna00650 Butanoate metabolism 4
bna00270 Cysteine and methionine metabolism 3
bna00920 Sulfur metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
ghi00904 Diterpenoid biosynthesis 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
ghi00904 Diterpenoid biosynthesis 2
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00904 Diterpenoid biosynthesis 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00906 Carotenoid biosynthesis 8
mtr00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00562 Inositol phosphate metabolism 2
sot04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00904 Diterpenoid biosynthesis 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00904 Diterpenoid biosynthesis 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00904 Diterpenoid biosynthesis 9
osa01040 Biosynthesis of unsaturated fatty acids 2
osa01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00904 Diterpenoid biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00904 Diterpenoid biosynthesis 6
osa00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00904 Diterpenoid biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00941 Flavonoid biosynthesis 2
hvu04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 2
hvu04814 Motor proteins 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844284 103832422 106430723 106354788 107921168 107916812 102609462 100793849 100267397 18101433 11446526 25486907 101252605 102602928 107825637 107795749 4350502 4329729 4329728 103645955 109943181 123429122 123427634 123427638 8063956 100827748 100829880 100828967
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