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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT1G79950   RAD3-like DNA-binding helicase protein 
 ath-r.7   AT1G79950   RAD3-like DNA-binding helicase protein 
 ath-m.9   AT1G79950   RAD3-like DNA-binding helicase protein 
 ath-e.2   AT1G79950   RAD3-like DNA-binding helicase protein 
 ath-m.4.bio   AT1G79950   RAD3-like DNA-binding helicase protein 
 ath-m.4.hor   AT1G79950   RAD3-like DNA-binding helicase protein 
 ath-m.4.lig   AT1G79950   RAD3-like DNA-binding helicase protein 
 ath-m.4.str   AT1G79950   RAD3-like DNA-binding helicase protein 
 ath-m.4.tis   AT1G79950   RAD3-like DNA-binding helicase protein 
 gma-u.5   100792904   regulator of telomere elongation helicase 1 homolog 
 vvi-u.5   100265202   regulator of telomere elongation helicase 1 homolog 
 mtr-u.5   11425787   regulator of telomere elongation helicase 1 homolog 
 sly-u.5   101249902   regulator of telomere elongation helicase 1 homolog 
 osa-u.5   4326378   regulator of telomere elongation helicase 1 homolog 
 zma-u.5   100286037   regulator of telomere elongation helicase 1 

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Top 50 coexpressed genes to AT1G79950 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G79950 (ath-u.5 coexpression data)

CoexMap"844335"


athAT1G79950 | Entrez gene ID : 844335      
Species ath gma vvi mtr sly osa zma tae hvu ghi bdi cit bra cre sbi ppo bna nta sot
Paralog 9 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0070716 [list] [network] mismatch repair involved in maintenance of fidelity involved in DNA-dependent DNA replication  (1 genes)  IMP  
GO:0043007 [list] [network] maintenance of rDNA  (3 genes)  IGI IMP  
GO:0010569 [list] [network] regulation of double-strand break repair via homologous recombination  (6 genes)  IMP  
GO:0036297 [list] [network] interstrand cross-link repair  (9 genes)  IMP  
GO:0045910 [list] [network] negative regulation of DNA recombination  (10 genes)  IMP  
GO:0000723 [list] [network] telomere maintenance  (20 genes)  IMP  
GO:0000725 [list] [network] recombinational repair  (46 genes)  IMP  
GO:0006260 [list] [network] DNA replication  (66 genes)  IMP  
GO:0006310 [list] [network] DNA recombination  (113 genes)  IMP  
GO:0006281 [list] [network] DNA repair  (203 genes)  IMP  
GO:0009555 [list] [network] pollen development  (385 genes)  IGI  
GO:0048364 [list] [network] root development  (600 genes)  IMP  
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001321157.1 [sequence] [blastp]
NP_001321158.1 [sequence] [blastp]
NP_001321159.1 [sequence] [blastp]
NP_001321160.1 [sequence] [blastp]
NP_001321161.1 [sequence] [blastp]
NP_001321162.1 [sequence] [blastp]
NP_178113.3 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 4,  mito 1,  cyto_mito 1  (predict for NP_001321157.1)
nucl 4,  chlo 3,  mito 1,  plas 1,  cysk 1,  cyto_mito 1,  cysk_plas 1  (predict for NP_001321158.1)
nucl 4,  chlo 4,  mito 1,  cyto_mito 1  (predict for NP_001321159.1)
chlo 4,  nucl 4,  chlo_mito 3,  mito 1,  cyto_mito 1  (predict for NP_001321160.1)
chlo 4,  nucl 4,  chlo_mito 3,  mito 1,  cyto_mito 1  (predict for NP_001321161.1)
nucl 4,  chlo 4,  mito 1,  cyto_mito 1  (predict for NP_001321162.1)
nucl 4,  chlo 3,  mito 1,  plas 1,  cysk 1,  cyto_mito 1,  cysk_plas 1  (predict for NP_178113.3)
Subcellular
localization
TargetP
mito 5,  other 4  (predict for NP_001321157.1)
mito 5,  other 4  (predict for NP_001321158.1)
mito 5,  other 4  (predict for NP_001321159.1)
mito 5,  other 4  (predict for NP_001321160.1)
mito 5,  other 4  (predict for NP_001321161.1)
mito 5,  other 4  (predict for NP_001321162.1)
mito 5,  other 4  (predict for NP_178113.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT1G79950

.
ath-r.7
for
AT1G79950

.
ath-m.9
for
AT1G79950

.
ath-e.2
for
AT1G79950

.
ath-m.4.bio
for
AT1G79950

.
ath-m.4.hor
for
AT1G79950

.
ath-m.4.lig
for
AT1G79950

.
ath-m.4.str
for
AT1G79950

.
ath-m.4.tis
for
AT1G79950

.
gma-u.5
for
100792904

.
vvi-u.5
for
100265202

.
mtr-u.5
for
11425787

.
sly-u.5
for
101249902

.
osa-u.5
for
4326378

.
zma-u.5
for
100286037

.


Ortholog ID: 9890
Species ath gma sly osa zma bra vvi mtr tae tae hvu ghi ghi bna bna cre cre sbi sot cit bdi nta nta
Symbol AT1G79950 LOC100792904 LOC101249902 LOC4326378 LOC100286037 LOC103830408 LOC100265202 LOC11425787 LOC123070031 LOC123078488 LOC123443804 LOC107937350 LOC107924100 LOC106415668 LOC106353348 CHLRE_02g089600v5 CHLRE_02g089608v5 LOC8082472 LOC102587877 LOC102618736 LOC100823673 LOC107778074 LOC107794086
Function* RAD3-like DNA-binding helicase protein regulator of telomere elongation helicase 1 homolog regulator of telomere elongation helicase 1 homolog regulator of telomere elongation helicase 1 homolog regulator of telomere elongation helicase 1 regulator of telomere elongation helicase 1 homolog regulator of telomere elongation helicase 1 homolog regulator of telomere elongation helicase 1 homolog regulator of telomere elongation helicase 1 homolog regulator of telomere elongation helicase 1 homolog regulator of telomere elongation helicase 1 homolog regulator of telomere elongation helicase 1 homolog regulator of telomere elongation helicase 1 homolog regulator of telomere elongation helicase 1 homolog regulator of telomere elongation helicase 1 homolog uncharacterized protein uncharacterized protein regulator of telomere elongation helicase 1 regulator of telomere elongation helicase 1 regulator of telomere elongation helicase 1 homolog regulator of telomere elongation helicase 1 homolog regulator of telomere elongation helicase 1 homolog regulator of telomere elongation helicase 1 homolog
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 9
ath03082 ATP-dependent chromatin remodeling 3
ath03410 Base excision repair 3
ath03420 Nucleotide excision repair 2
ath03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 6
gma03430 Mismatch repair 5
gma03420 Nucleotide excision repair 4
gma03440 Homologous recombination 3
gma03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 7
sly03410 Base excision repair 3
sly03430 Mismatch repair 3
sly03013 Nucleocytoplasmic transport 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 3
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
bra03010 Ribosome 3
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 3
vvi03440 Homologous recombination 2
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 4
tae03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03410 Base excision repair 6
tae03013 Nucleocytoplasmic transport 4
tae04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 4
ghi03430 Mismatch repair 4
ghi04814 Motor proteins 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 4
ghi03430 Mismatch repair 4
ghi03440 Homologous recombination 4
ghi04814 Motor proteins 2
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 8
bna00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 5
sot03440 Homologous recombination 3
sot03460 Fanconi anemia pathway 2
sot00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03030 DNA replication 3
cit03410 Base excision repair 2
cit03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03440 Homologous recombination 3
bdi03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 2
nta04145 Phagosome 2
nta04517 IgSF CAM signaling 2
nta04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844335 100792904 101249902 4326378 100286037 103830408 100265202 11425787 123070031 123078488 123443804 107937350 107924100 106415668 106353348 66052305 5727456 8082472 102587877 102618736 100823673 107778074 107794086
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