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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PDE318   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 ath-r.7   PDE318   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 ath-m.9   PDE318   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 ath-e.2   PDE318   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 ath-m.4.bio   PDE318   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 ath-m.4.hor   PDE318   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 ath-m.4.lig   PDE318   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 ath-m.4.str   PDE318   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 ath-m.4.tis   PDE318   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 gma-u.5   100794359   nucleolar GTP-binding protein 1 
 vvi-u.5   100263244   uncharacterized LOC100263244 
 ppo-u.5   7453904   uncharacterized LOC7453904 
 mtr-u.5   25499910   nucleolar GTP-binding protein 1 
 sly-u.5   101259578   nucleolar GTP-binding protein 1 
 osa-u.5   4344710   nucleolar GTP-binding protein 1 
 zma-u.5   100285001   nucleolar GTP-binding protein 1 

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Top 50 coexpressed genes to PDE318 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PDE318 (ath-u.5 coexpression data)

CoexMap"844416"


athPDE318 | Entrez gene ID : 844416      
Species ath gma vvi ppo mtr sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 9 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03008 [list] [network] Ribosome biogenesis in eukaryotes (98 genes)
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0005525 [list] [network] GTP binding  (83 genes)  IEA  
Protein NP_001185451.1 [sequence] [blastp]
NP_001320866.1 [sequence] [blastp]
NP_001320867.1 [sequence] [blastp]
NP_001320868.1 [sequence] [blastp]
NP_001320869.1 [sequence] [blastp]
NP_178192.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  plas 2,  chlo_mito 2,  nucl 1,  cyto 1,  cyto_nucl 1,  mito_plas 1  (predict for NP_001185451.1)
chlo 7,  nucl 1,  plas 1,  pero 1,  cyto_nucl 1,  cysk_nucl 1  (predict for NP_001320866.1)
chlo 8,  chlo_mito 5,  mito 1  (predict for NP_001320867.1)
chlo 6,  mito 2,  nucl 1  (predict for NP_001320868.1)
chlo 8,  chlo_mito 5,  mito 1  (predict for NP_001320869.1)
chlo 9,  chlo_mito 5  (predict for NP_178192.1)
Subcellular
localization
TargetP
other 5  (predict for NP_001185451.1)
chlo 3  (predict for NP_001320866.1)
chlo 3,  mito 3  (predict for NP_001320867.1)
chlo 7,  mito 3  (predict for NP_001320868.1)
chlo 8  (predict for NP_001320869.1)
chlo 5,  mito 3  (predict for NP_178192.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PDE318

.
ath-r.7
for
PDE318

.
ath-m.9
for
PDE318

.
ath-e.2
for
PDE318

.
ath-m.4.bio
for
PDE318

.
ath-m.4.hor
for
PDE318

.
ath-m.4.lig
for
PDE318

.
ath-m.4.str
for
PDE318

.
ath-m.4.tis
for
PDE318

.
gma-u.5
for
100794359

.
vvi-u.5
for
100263244

.
ppo-u.5
for
7453904

.
mtr-u.5
for
25499910

.
sly-u.5
for
101259578

.
osa-u.5
for
4344710

.
zma-u.5
for
100285001

.


Ortholog ID: 8322
Species ath gma sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot cit bdi nta nta
Symbol PDE318 LOC100794359 LOC101259578 LOC4344710 LOC100285001 LOC103832456 LOC103830456 LOC100263244 LOC7453904 LOC25499910 LOC123143284 LOC123131815 LOC123401932 LOC107933663 LOC107890916 LOC106430761 LOC106402349 CHLRE_08g384355v5 LOC8074422 LOC8080848 LOC102606333 LOC102611795 LOC100837400 LOC107778132 LOC107777720
Function* P-loop containing nucleoside triphosphate hydrolases superfamily protein nucleolar GTP-binding protein 1 nucleolar GTP-binding protein 1 nucleolar GTP-binding protein 1 nucleolar GTP-binding protein 1 nucleolar GTP-binding protein 1 nucleolar GTP-binding protein 1 uncharacterized LOC100263244 uncharacterized LOC7453904 nucleolar GTP-binding protein 1 GTP-binding protein 4 GTP-binding protein 4 GTP-binding protein 4 nucleolar GTP-binding protein 1 nucleolar GTP-binding protein 1 GTP-binding protein 4 GTP-binding protein 4-like uncharacterized protein nucleolar GTP-binding protein 1 nucleolar GTP-binding protein 1 nucleolar GTP-binding protein 1 uncharacterized LOC102611795 nucleolar GTP-binding protein 1 uncharacterized LOC107778132 nucleolar GTP-binding protein 1-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 3
zma04141 Protein processing in endoplasmic reticulum 2
zma03018 RNA degradation 2
zma00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
bra04141 Protein processing in endoplasmic reticulum 3
bra03040 Spliceosome 2
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 2
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00270 Cysteine and methionine metabolism 2
mtr01230 Biosynthesis of amino acids 2
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00860 Porphyrin metabolism 3
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00540 Lipopolysaccharide biosynthesis 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
bna03013 Nucleocytoplasmic transport 4
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
bna00920 Sulfur metabolism 2
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03060 Protein export 2
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 3
nta03015 mRNA surveillance pathway 2
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 6
nta03015 mRNA surveillance pathway 2
nta00450 Selenocompound metabolism 2
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844416 100794359 101259578 4344710 100285001 103832456 103830456 100263244 7453904 25499910 123143284 123131815 123401932 107933663 107890916 106430761 106402349 5719810 8074422 8080848 102606333 102611795 100837400 107778132 107777720
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