ATTED-II : GeneCoexpression result

Species	Gene	Description
osa-u.5	9272301	nuclear poly(A) polymerase 3
osa-r.6	9272301	nuclear poly(A) polymerase 3
osa-e.1	9272301	nuclear poly(A) polymerase 3
osa-u.5	4344356	nuclear poly(A) polymerase 3
zma-u.5	103639211	nuclear poly(A) polymerase 3
zma-u.5	100285931	Nuclear poly(A) polymerase 3
zma-u.5	100274408	Nuclear poly(A) polymerase 3
ath-u.5	AT5G02670	uncharacterized protein
sly-u.5	101244314	nuclear poly(A) polymerase 3
sly-u.5	101243972	nuclear poly(A) polymerase 3
vvi-u.5	100267147	nuclear poly(A) polymerase 3
ppo-u.5	7485885	nuclear poly(A) polymerase 3

functional annotation

KEGG

osa03015 [list] [network] mRNA surveillance pathway (114 genes)

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(3003 genes)

IEA

GO MF

GO:1990817 [list] [network] poly(A) RNA polymerase activity	(9 genes)	IEA
GO:0003723 [list] [network] RNA binding	(1223 genes)	IEA

Protein

XP_015629071.1 [sequence] [blastp]

Subcellular
localization
wolf

mito 3, chlo 3, cyto_mito 2, nucl 1, plas 1, nucl_plas 1

(predict for XP_015629071.1)

Subcellular
localization
TargetP

mito 6, chlo 5

(predict for XP_015629071.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-u.5 for 9272301	osa-r.6 for 9272301	osa-e.1 for 9272301	osa-u.5 for 4344356	zma-u.5 for 103639211	zma-u.5 for 100285931	zma-u.5 for 100274408	ath-u.5 for AT5G02670	sly-u.5 for 101244314	sly-u.5 for 101243972	vvi-u.5 for 100267147	ppo-u.5 for 7485885

Ortholog ID: 6541

Species

osa

tae

hvu

bdi

zma

sbi

ath

sly

bra

vvi

ppo

ghi

sot

cit

nta

Symbol

Function^*

nuclear poly(A) polymerase 3

nuclear poly(A) polymerase 3-like

nuclear poly(A) polymerase 3

Nuclear poly(A) polymerase 3

nuclear poly(A) polymerase 3

uncharacterized protein

nuclear poly(A) polymerase 3

nuclear poly(A) polymerase 3-like

nuclear poly(A) polymerase 3

nuclear poly(A) polymerase 3-like

nuclear poly(A) polymerase 3

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	6
tae03015	mRNA surveillance pathway	3
tae04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03030	DNA replication	4
tae04075	Plant hormone signal transduction	3
tae03015	mRNA surveillance pathway	3
tae03410	Base excision repair	2
tae03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00740	Riboflavin metabolism	2
bdi00790	Folate biosynthesis	2
bdi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	3
sbi00561	Glycerolipid metabolism	2
sbi03250	Viral life cycle - HIV-1	2
sbi03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
bra00350	Tyrosine metabolism	2
bra00360	Phenylalanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	3
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	7
ghi03013	Nucleocytoplasmic transport	5
ghi03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00941	Flavonoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00500	Starch and sucrose metabolism	2
cit00630	Glyoxylate and dicarboxylate metabolism	2
cit01200	Carbon metabolism	2
cit01230	Biosynthesis of amino acids	2
cit01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta01200	Carbon metabolism	4
nta03015	mRNA surveillance pathway	2
nta00220	Arginine biosynthesis	2
nta00250	Alanine, aspartate and glutamate metabolism	2
nta00910	Nitrogen metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta01200	Carbon metabolism	4
nta03015	mRNA surveillance pathway	2
nta00220	Arginine biosynthesis	2
nta00250	Alanine, aspartate and glutamate metabolism	2
nta00910	Nitrogen metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

4344356

9272301

123043606

123097654

123424651

123448802

100845437

100827101

103639211

100274408

8081062

831844

101243972

101244314

103870736

100267147

7485885

121215492

107910565

102595923

102598065

102610335

107792249

107796122

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 9272301 (osa-u.5 coexpression data)

Top 50 enrichment test to 9272301 (osa-u.5 coexpression data)


Species	osa	zma	ath	sly	vvi	ppo	bdi	mtr	bra	hvu	cit	gma	bna	sbi	ghi	sot	nta	cre	tae
Paralog	4	3	1	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 9272301 (osa-u.5 coexpression data)

Top 50 enrichment test to 9272301 (osa-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**