GO:0016071 mRNA metabolic process

280 ath genes in this database.
1 osa genes in this database.

[QuickGO]

term: mRNA metabolic process
goid: GO:0016071

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Shaded genes do not have GeneChip data. The output was limited up to 10000.
Species Symbol Gene
coexpression		 Locus
page 		Full name* Entrez Gene ID Evidence*
ath EMB2794 Tetratricopeptide repeat (TPR)-like superfamily protein 814746
ath AT2G02570 nucleic acid binding/RNA binding protein 814787
ath RNEE/G RNAse E/G-like protein 814965
ath HEN2 RNA helicase, ATP-dependent, SK12/DOB1 protein 815269
ath PFD1 PREFOLDIN 1 815304
ath SLO2 Pentatricopeptide repeat (PPR) superfamily protein 815845
ath OTP51 endonuclease 816078
ath PRORP2 proteinaceous RNase P 2 816166
ath AT2G16940 Splicing factor, CC1-like protein 816197
ath IRE1A Endoribonuclease/protein kinase IRE1-like protein 816258
ath AT2G17580 Polynucleotide adenylyltransferase family protein 816265
ath AT2G17970 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 816307
ath HBI1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 816346
ath MEF21 mitochondrial editing factor 21 816576
ath GRP7 cold, circadian rhythm, and rna binding 2 816705
ath SNRNP-G Putative small nuclear ribonucleoprotein G 816925
ath AT2G28050 Pentatricopeptide repeat (PPR) superfamily protein 817349
ath MAC5B CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein 817507
ath U2B'' U2 small nuclear ribonucleoprotein B 817576
ath LSH3 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) 817672
ath MAC3B MOS4-associated complex 3B 817897
ath AT2G33730 P-loop containing nucleoside triphosphate hydrolases superfamily protein 817938
ath AT2G35130 Tetratricopeptide repeat (TPR)-like superfamily protein 818079
ath MORF6 plastid developmental protein DAG 818091
ath AT2G36480 pre-mRNA cleavage complex 2 Pcf11-like protein 818222
ath RS2Z33 arginine/serine-rich zinc knuckle-containing protein 33 818311
ath EMB2765 P-loop containing nucleoside triphosphate hydrolases superfamily protein 818459
ath AT2G39260 regulator of nonsense transcripts UPF2 818511
ath SAC3A SAC3/GANP/Nin1/mts3/eIF-3 p25 family 818519
ath LIS WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-like protein 818748
ath EMB2654 Tetratricopeptide repeat (TPR)-like superfamily protein 818771
ath LSH10 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) 818861
ath FPA RNA binding protein 818942
ath AT2G43770 Transducin/WD40 repeat-like superfamily protein 818980
ath AT2G43960 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein 819001
ath CRR4 Pentatricopeptide repeat (PPR) superfamily protein 819143
ath AT2G45620 Nucleotidyltransferase family protein 819170
ath AT2G46050 Pentatricopeptide repeat (PPR-like) superfamily protein 819213
ath U1A spliceosomal protein U1A 819371
ath AT2G48080 oxidoreductase, 2OG-Fe(II) oxygenase family protein 819420
ath PAC pale cress protein (PAC) 819424
ath LSH2 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) 819607
ath CLPS3 CLP-similar protein 3 819626
ath MEF19 mitochondrial editing factor 19 819688
ath EMB2016 embryo defective 2016 819736
ath AT3G05760 C2H2 and C2HC zinc fingers superfamily protein 819745
ath AT3G66652 fip1 motif-containing protein 819846
ath MORF3 plastid developmental protein DAG 819864
ath AT3G06980 DEA(D/H)-box RNA helicase family protein 819883
ath AT3G07860 Ubiquitin-like superfamily protein 819977
ath AT3G09100 mRNA capping enzyme family protein 820064
ath HCF152 Tetratricopeptide repeat (TPR)-like superfamily protein 820122
ath U11/U12-31K RNA recognition motif and CCHC-type zinc finger domains containing protein 820203
ath AT3G12640 RNA binding (RRM/RBD/RNP motifs) family protein 820444
ath MEF22 mitochondrial editing factor 22 820459
ath VCR varicose-like protein 820529
ath VCS Transducin/WD40 repeat-like superfamily protein 820530
ath SCL30A SC35-like splicing factor 30A 820559
ath LSM1B Small nuclear ribonucleoprotein family protein 820624
ath RIP1 cobalt ion binding protein 820729
ath PAB6 poly(A) binding protein 6 820885 TAS
ath NRPB9A RNA polymerases M/15 Kd subunit 820954
ath HCF107 high chlorophyll fluorescent 107 820961
ath AT3G02330 Pentatricopeptide repeat (PPR) superfamily protein 821115
ath UNE6 LUC7 related protein 821276
ath MEF20 mitochondrial editing factor 20 821430
ath PRP40B pre-mRNA-processing protein 40B 821504
ath EIF4A-III eukaryotic initiation factor 4A-III 821513
ath AT3G20930 RNA-binding (RRM/RBD/RNP motifs) family protein 821642
ath ZML1 ZIM-like 1 821670
ath AT3G21215 RNA-binding (RRM/RBD/RNP motifs) family protein 821675 IEA
ath AT3G22150 Tetratricopeptide repeat (TPR)-like superfamily protein 821779
ath PDF2 prefoldin 2 821819
ath LSH4 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) 821908
ath AT3G24730 mRNA splicing factor, thioredoxin-like U5 snRNP 822071
ath AT3G25840 Protein kinase superfamily protein 822178
ath AT3G25940 TFIIB zinc-binding protein 822191
ath AT3G26020 Protein phosphatase 2A regulatory B subunit family protein 822199
ath AT3G27550 RNA-binding CRS1 / YhbY (CRM) domain protein 822377
ath AT3G27600 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein 822382
ath CAF1a Polynucleotidyl transferase, ribonuclease H-like superfamily protein 823551
ath CRR2 Tetratricopeptide repeat (TPR)-like superfamily protein 823832
ath AT3G46960 RNA helicase, ATP-dependent, SK12/DOB1 protein 823849
ath AT3G48120 serine/arginine-rich splicing factor 823967
ath AT3G49130 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein 824074
ath U1-70K U1 small nuclear ribonucleoprotein-70K 824230
ath RS2Z32 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein 824518
ath FIP37 FKBP12 interacting protein 37 824584
ath SUA suppressor of abi3-5 824590
ath SCL30 SC35-like splicing factor 30 824712
ath AT3G56790 RNA splicing factor-like protein 824846
ath AT3G58390 Eukaryotic release factor 1 (eRF1) family protein 825008
ath AT3G58560 DNAse I-like superfamily protein 825025
ath AT3G61360 Tetratricopeptide repeat (TPR)-like superfamily protein 825308
ath RS31 RNA-binding (RRM/RBD/RNP motifs) family protein 825359
ath AT3G62310 RNA helicase family protein 825404
ath PCFS4 PCF11P-similar protein 4 825827
ath EMB1691 Methyltransferase MT-A70 family protein 826589
ath CID12 CTC-interacting domain 12 826653 IEA
ath MTA mRNAadenosine methylase 826670
ath MTSSB mitochondrially targeted single-stranded DNA binding protein 826707
ath AT4G11690 Pentatricopeptide repeat (PPR-like) superfamily protein 826774
ath AT4G16200 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein 827313
ath NRPB9B RNA polymerases M/15 Kd subunit 827321
ath AT4G17620 glycine-rich protein 827482
ath smB small nuclear ribonucleoprotein associated protein B 827792
ath EMB2770 pre-mRNA splicing factor-like protein 827925
ath RBP-DR1 RNA-binding protein-defense related 1 828090
ath AT4G02940 oxidoreductase, 2OG-Fe(II) oxygenase family protein 828132
ath PRORP3 proteinaceous RNase P 3 828279
ath AT4G22350 Ubiquitin C-terminal hydrolases superfamily protein 828330
ath AT4G22410 U4/U6.U5 tri-snRNP-associated-like protein 828336
ath SIC hydroxyproline-rich glycoprotein family protein 828552
ath FC2 LAMMER-type protein kinase AFC2 828576
ath RS40 arginine/serine-rich splicing factor 35 828654
ath AT4G25550 Cleavage/polyadenylation specificity factor, 25kDa subunit 828660
ath PEP RNA-binding KH domain-containing protein 828706
ath PIRL8 plant intracellular ras group-related LRR 8 828711
ath PEL1 Eukaryotic release factor 1 (eRF1) family protein 828876
ath AT4G28010 Tetratricopeptide repeat (TPR)-like superfamily protein 828915
ath CFIM-25 homolog of CFIM-25 829104
ath RUXF small nuclear ribonucleoprotein F 829145
ath MEF29 Pentatricopeptide repeat (PPR) superfamily protein 829193
ath RSZ22 serine/arginine-rich 22 829285
ath AT4G32270 Ubiquitin-like superfamily protein 829360
ath AT4G36090 oxidoreductase, 2OG-Fe(II) oxygenase family protein 829765
ath ATU2AF65A U2 snRNP auxilliary factor, large subunit, splicing factor 829822
ath BGAL14 beta-galactosidase 14 830016
ath CCR1 cold, circadian rhythm, and RNA binding 1 830082
ath AT5G04050 RNA-directed DNA polymerase (reverse transcriptase) 830284
ath AT5G06520 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein 830540
ath AT5G06890 Ubiquitin-like superfamily protein 830579
ath Tudor1 TUDOR-SN protein 1 830626
ath YLS8 mRNA splicing factor, thioredoxin-like U5 snRNP 830725
ath SLG1 Tetratricopeptide repeat (TPR)-like superfamily protein 830748
ath ILP1 GC-rich sequence DNA-binding factor-like protein 830755
ath AT5G08720 polyketide cyclase/dehydrase/lipid transporter 830772
ath AT5G09210 GC-rich sequence DNA-binding factor-like protein 830780
ath AT5G09880 Splicing factor, CC1-like protein 830848
ath AT5G10630 Translation elongation factor EF1A/initiation factor IF2gamma family protein 830928
ath AT5G12280 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein 831103
ath EMB3011 RNA helicase family protein 831141
ath FY Transducin/WD40 repeat-like superfamily protein 831191
ath DCP2 decapping 2 831201
ath ELF9 RNA binding (RRM/RBD/RNP motifs) family protein 831486
ath VAR3 zinc finger (Ran-binding) family protein 831647
ath AT5G01160 RING/U-box superfamily protein 831742
ath SCL28 SC35-like splicing factor 28 831999
ath MEF18 mitochondrial editing factor 18 832021
ath AT5G19350 RNA-binding (RRM/RBD/RNP motifs) family protein 832055
ath SMG7 Telomerase activating protein Est1 832060
ath LARP1a LA RNA-binding protein 832242
ath CAF1b Polynucleotidyl transferase, ribonuclease H-like superfamily protein 832285
ath HUA2 Tudor/PWWP/MBT domain-containing protein 832379
ath PFD5 prefoldin 5 832393
ath CPSF100 cleavage and polyadenylation specificity factor 100 832453
ath AT5G25340 Ubiquitin-like superfamily protein 832606
ath EMB976 Tetratricopeptide repeat (TPR)-like superfamily protein 832785
ath LSH1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) 832941
ath AT5G40490 RNA-binding (RRM/RBD/RNP motifs) family protein 834047
ath AT5G42310 Pentatricopeptide repeat (PPR-like) superfamily protein 834236
ath AT5G43620 Pre-mRNA cleavage complex II 834382
ath CBP20 CAP-binding protein 20 834443
ath MORF4 high molecular weight subunit-like glutenin 834507
ath DCP5-L decapping 5-like protein 834569
ath AT5G46920 Intron maturase, type II family protein 834738
ath LBA1 RNA helicase 834747
ath PFD3 prefoldin 3 835011
ath RS41 RNA-binding (RRM/RBD/RNP motifs) family protein 835279
ath AT5G54580 RNA-binding (RRM/RBD/RNP motifs) family protein 835546
ath CRR21 Tetratricopeptide repeat (TPR)-like superfamily protein 835668
ath AT5G58020 RTF2 RING-finger protein 835914
ath FIP1[V] FIP1[V]-like protein 835916
ath AT5G60940 Transducin/WD40 repeat-like superfamily protein 836215
ath GR-RBP3 glycine-rich RNA-binding protein 3 836224
ath Tudor2 TUDOR-SN protein 2 836300
ath AT5G62290 nucleotide-sensitive chloride conductance regulator (ICln) family protein 836350
ath AT5G63370 Protein kinase superfamily protein 836456
ath SC35 serine/arginine-rich splicing factor-like protein, putative 836541
ath HEN4 RNA-binding KH domain-containing protein 836560
ath CDKC2 cyclin dependent kinase group C2 836620
ath MEF3 Pentatricopeptide repeat (PPR) superfamily protein 837123
ath RHON1 Rho termination factor 837128
ath AT1G06710 Tetratricopeptide repeat (TPR)-like superfamily protein 837181
ath LSH6 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) 837220
ath AT1G07170 PHF5-like protein 837228
ath DCP1 decapping 1 837357
ath AIP3 ABI3-interacting protein 3 837400
ath AT1G09230 RNA-binding (RRM/RBD/RNP motifs) family protein 837443
ath U2A' U2 small nuclear ribonucleoprotein A 837505
ath CRR22 Pentatricopeptide repeat (PPR) superfamily protein 837671
ath AT1G12300 Tetratricopeptide repeat (TPR)-like superfamily protein 837784
ath RPF1 RNA processing FACTOR 837825
ath AT1G14640 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein 838026
ath AT1G14650 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein 838027
ath AT1G14710 hydroxyproline-rich glycoprotein family protein 838036
ath AT1G15280 CASC3/Barentsz eIF4AIII binding protein 838095
ath AT1G15480 Tetratricopeptide repeat (TPR)-like superfamily protein 838118
ath SR45 arginine/serine-rich 45 838230
ath LSH8 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) 838262
ath STIPL1 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein 838277
ath AT1G18050 SWAP/surp RNA-binding domain protein 838385
ath LSM1A Small nuclear ribonucleoprotein family protein 838495
ath SRS7 SHI-related sequence 7 838567
ath AT1G20580 Small nuclear ribonucleoprotein family protein 838647
ath emb1507 U5 small nuclear ribonucleoprotein helicase 838690
ath PAB3 poly(A) binding protein 3 838882
ath RSZ21 RS-containing zinc finger protein 21 838997
ath AT1G25682 coiled-coil protein (DUF572) 839146
ath AT1G25988 coiled-coil protein, putative (DUF572) 839149
ath DCP5 decapping 5 839152
ath PFC1 Ribosomal RNA adenine dimethylase family protein 839283
ath AT1G01940 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 839309
ath PRP39 Tetratricopeptide repeat (TPR)-like superfamily protein 839314
ath AT1G03457 RNA-binding (RRM/RBD/RNP motifs) family protein 839497
ath MAC3A MOS4-associated complex 3A 839503
ath AT1G03140 splicing factor Prp18 family protein 839567
ath AT1G28060 Pre-mRNA-splicing factor 3 839699
ath AT1G29220 transcriptional regulator family protein 839796
ath PFD6 prefoldin 6 839878
ath nMAT1 Intron maturase, type II family protein 839880
ath CPSF30 cleavage and polyadenylation specificity factor 30 839925
ath DRT111 D111/G-patch domain-containing protein 839927
ath EMB2279 pentatricopeptide (PPR) repeat-containing protein 839941
ath AT1G31500 DNAse I-like superfamily protein 840040
ath AT1G31870 pre-mRNA-splicing factor of RES complex protein 840077
ath AT1G32580 plastid developmental protein DAG 840152
ath UPF3 Smg-4/UPF3 family protein 840295
ath PRP40A pre-mRNA-processing protein 40A 841057
ath DYW1 Pentatricopeptide repeat (PPR) superfamily protein 841167
ath AT1G48980 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 841320
ath AT1G49590 C2H2 and C2HC zinc fingers superfamily protein 841383
ath TAF15 TBP-associated factor 15 841452
ath ZML2 ZIM-LIKE 2 841585 IEA
ath AT1G54380 spliceosome protein-like protein 841879
ath XRN4 exoribonuclease 4 841891
ath SCL33 SC35-like splicing factor 33 841976
ath CRR28 Tetratricopeptide repeat (TPR)-like superfamily protein 842263
ath AT1G60200 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein 842315
ath AT1G60900 U2 snRNP auxilliary factor, large subunit, splicing factor 842382
ath AT1G62910 Pentatricopeptide repeat (PPR) superfamily protein 842592
ath RPF3 Tetratricopeptide repeat (TPR)-like superfamily protein 842594
ath AT1G66500 Pre-mRNA cleavage complex II 842968
ath EMB25 DEAD/DEAH box helicase 843343
ath AT1G70400 NOSIC domain protein 843376
ath PAB5 poly(A)-binding protein 5 843507
ath AT1G72530 plastid developmental protein DAG 843585
ath AT1G73530 RNA-binding (RRM/RBD/RNP motifs) family protein 843687
ath ESP1 hydroxyproline-rich glycoprotein family protein 843720
ath GR-RBP5 glycine-rich RNA-binding protein 5 843763
ath AT1G74350 Intron maturase, type II family protein 843776
ath OTP87 pentatricopeptide (PPR) repeat-containing protein 843800
ath SmD3 snRNP core protein SMD3 843963
ath AT1G76630 Tetratricopeptide repeat (TPR)-like superfamily protein 843996
ath SKIP chromatin protein family 844055
ath AT1G77680 Ribonuclease II/R family protein 844104
ath LSH7 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) 844218
ath AT1G79090 topoisomerase II-associated protein 844250
ath AT1G80000 CASC3/Barentsz eIF4AIII binding protein 844340 IEA
ath AT1G80060 Ubiquitin-like superfamily protein 844346
ath SUS2 Pre-mRNA-processing-splicing factor 844347
ath U1.5 3766679
ath U12 3767596
ath AT2G29430 coiled-coil protein (DUF572) 3768235
ath U6-26 3768861
ath U2.6 3769727
ath U2.4 3769728
ath U2.2 3769730
ath U2.3 3769731
ath U6acat 3771384
ath U6-29 3771447
ath U2.7 3771548
ath AT2G14285 Small nuclear ribonucleoprotein family protein 5007874
ath AT4G22285 Ubiquitin C-terminal hydrolases superfamily protein 5008155
ath AT5G26749 C2H2 and C2HC zinc fingers superfamily protein 7922524
ath U4.2 28718958
ath U6-1 28719273
ath LSH9 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) 28720146
ath U2.5 28721113
ath LSH5 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) 28721277


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