GO:0016607 nuclear speck
86 ath genes in this database. |
[QuickGO]
term: nuclear speck
goid: GO:0016607
Shaded genes do not have GeneChip data. The output was limited up to 100 for each of species.
Species | Symbol | Supportability of expression data |
Gene coexpression |
Locus page |
Full name* | Entrez Gene ID | Evidence* |
---|---|---|---|---|---|---|---|
ath | HEN2 | ☆☆☆ | RNA helicase, ATP-dependent, SK12/DOB1 protein | 815269 | IDA | ||
ath | PHYB | ☆ | phytochrome B | 816394 | IEA | ||
ath | RSZ22a | ☆☆ | RNA recognition motif and CCHC-type zinc finger domains containing protein | 816995 | IBA | ||
ath | SE | ☆☆☆ | C2H2 zinc-finger protein SERRATE (SE) | 817252 | IDA | ||
ath | AT2G33435 | ☆☆☆ | RNA-binding (RRM/RBD/RNP motifs) family protein | 817909 | IBA | ||
ath | RS2Z33 | ☆ | arginine/serine-rich zinc knuckle-containing protein 33 | 818311 | IBA,IDA | ||
ath | LIS | ☆ | WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-like protein | 818748 | IDA | ||
ath | PP5.2 | ☆☆ | protein phosphatase 5.2 | 818881 | IEA | ||
ath | AT2G43370 | ☆☆ | RNA-binding (RRM/RBD/RNP motifs) family protein | 818938 | IEA | ||
ath | SPA1 | ☆☆☆ | SPA (suppressor of phyA-105) protein family | 819242 | IEA | ||
ath | RS31a | ☆☆ | RNA-binding (RRM/RBD/RNP motifs) family protein | 819273 | IBA | ||
ath | EMB2016 | ☆☆☆ | embryo defective 2016 | 819736 | IDA | ||
ath | AT3G07590 | ☆☆☆ | Small nuclear ribonucleoprotein family protein | 819950 | IDA | ||
ath | HUA1 | ☆☆ | floral homeotic protein (HUA1) | 820448 | IEA | ||
ath | SCL30A | ☆☆☆ | SC35-like splicing factor 30A | 820559 | IBA,IDA | ||
ath | EIF4A-III | ☆☆ | eukaryotic initiation factor 4A-III | 821513 | IDA | ||
ath | VRN5 | Fibronectin type III domain-containing protein | 822034 | IDA | |||
ath | AT3G47120 | ☆☆☆ | RNA recognition motif (RRM)-containing protein | 823865 | IDA | ||
ath | SR34a | ☆☆☆ | SER/ARG-rich protein 34A | 824105 | IBA | ||
ath | U1-70K | ☆☆☆ | U1 small nuclear ribonucleoprotein-70K | 824230 | IEA | ||
ath | RS2Z32 | ☆☆ | RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein | 824518 | IBA | ||
ath | FIP37 | ☆☆☆ | FKBP12 interacting protein 37 | 824584 | IEA | ||
ath | SCL30 | ☆☆ | SC35-like splicing factor 30 | 824712 | IBA,IDA | ||
ath | RS31 | ☆☆☆ | RNA-binding (RRM/RBD/RNP motifs) family protein | 825359 | IBA,IDA | ||
ath | AT3G63400 | ☆☆ | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | 825515 | IEA | ||
ath | EMB1691 | ☆☆ | Methyltransferase MT-A70 family protein | 826589 | IEA | ||
ath | MTA | ☆☆ | mRNAadenosine methylase | 826670 | IBA,IDA | ||
ath | ML3 | 827537 | IBA | ||||
ath | AT4G19610 | ☆☆☆ | nucleotide/nucleic acid binding protein | 827703 | IBA | ||
ath | AT4G20030 | ☆ | RNA-binding (RRM/RBD/RNP motifs) family protein | 827748 | IBA | ||
ath | SR34b | ☆ | RNA-binding (RRM/RBD/RNP motifs) family protein | 828027 | IBA | ||
ath | AT4G02840 | ☆☆☆ | Small nuclear ribonucleoprotein family protein | 828163 | IDA | ||
ath | CPL1 | ☆☆☆ | C-terminal domain phosphatase-like 1 | 828254 | IEA | ||
ath | RS40 | ☆☆ | arginine/serine-rich splicing factor 35 | 828654 | IBA,IDA | ||
ath | LAF1 | myb domain protein 18 | 828661 | IEA | |||
ath | RSZ22 | ☆☆ | serine/arginine-rich 22 | 829285 | IBA,IDA | ||
ath | AT5G05720 | RNA-binding (RRM/RBD/RNP motifs) family protein | 830456 | IBA | |||
ath | FHL | far-red-elongated hypocotyl1-like protein | 830832 | IDA | |||
ath | AT5G10350 | ☆☆ | RNA-binding (RRM/RBD/RNP motifs) family protein | 830899 | IDA | ||
ath | AT5G01160 | ☆☆ | RING/U-box superfamily protein | 831742 | IEA | ||
ath | SCL28 | SC35-like splicing factor 28 | 831999 | IBA,IDA | |||
ath | SPL7 | ☆☆ | squamosa promoter binding protein-like 7 | 832001 | IDA | ||
ath | TGH | ☆☆☆ | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein | 832372 | IEA | ||
ath | COL4 | ☆☆☆ | zinc finger CONSTANS-like protein | 832563 | IDA | ||
ath | RRC1 | ☆☆☆ | RNA recognition motif (RRM)-containing protein | 832577 | IEA | ||
ath | SEF | HIT-type Zinc finger family protein | 833676 | IEA | |||
ath | U2AF35B | ☆☆ | Zinc finger C-x8-C-x5-C-x3-H type family protein | 834293 | IEA | ||
ath | PABN1 | ☆☆ | polyadenylate-binding protein 1 | 835186 | IDA | ||
ath | RS41 | ☆☆☆ | RNA-binding (RRM/RBD/RNP motifs) family protein | 835279 | IBA | ||
ath | RCF3 | ☆ | RNA-binding KH domain-containing protein | 835386 | IEA | ||
ath | OXS3 | ☆☆☆ | oxidative stress 3 | 835756 | IBA,IDA | ||
ath | VIN3 | Fibronectin type III domain-containing protein | 835844 | IDA | |||
ath | SIZ1 | ☆☆☆ | DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain-containing protein | 836163 | IEA | ||
ath | PIF7 | ☆ | phytochrome-interacting factor7 | 836248 | IDA | ||
ath | ML1 | ☆☆ | MEI2-like protein 1 | 836317 | IBA | ||
ath | AT5G63370 | ☆☆ | Protein kinase superfamily protein | 836456 | IEA | ||
ath | AT5G63440 | ☆☆ | hypothetical protein (DUF167) | 836463 | IEA | ||
ath | SC35 | ☆☆ | serine/arginine-rich splicing factor-like protein, putative | 836541 | IBA,IDA | ||
ath | AT5G65260 | ☆☆ | RNA-binding (RRM/RBD/RNP motifs) family protein | 836651 | IDA | ||
ath | MEE5 | ☆☆☆ | Ribosomal protein S5/Elongation factor G/III/V family protein | 837131 | IDA | ||
ath | SR45a | ☆☆☆ | RNA-binding (RRM/RBD/RNP motifs) family protein | 837246 | IEA | ||
ath | AT1G08390 | recQ-mediated instability-like protein | 837359 | IBA | |||
ath | SR30 | ☆☆☆ | SERINE-ARGININE PROTEIN 30 | 837433 | IBA | ||
ath | PHYA | ☆☆ | phytochrome A | 837483 | IEA | ||
ath | HYL1 | ☆☆ | dsRNA-binding domain-like superfamily protein | 837498 | IEA | ||
ath | MAGO | ☆☆ | mago nashi family protein | 837560 | IDA | ||
ath | SR45 | ☆☆☆ | arginine/serine-rich 45 | 838230 | IDA | ||
ath | AT1G21580 | ☆☆☆ | Zinc finger C-x8-C-x5-C-x3-H type family protein | 838759 | IDA | ||
ath | RSZ21 | ☆ | RS-containing zinc finger protein 21 | 838997 | IBA,IDA | ||
ath | THO2 | ☆☆☆ | THO2 | 839081 | IDA | ||
ath | SR34 | ☆☆ | RNA-binding (RRM/RBD/RNP motifs) family protein | 839262 | IBA,IDA | ||
ath | AT1G02330 | ☆☆ | integrator complex subunit-like protein | 839367 | IDA | ||
ath | NLA | SPX (SYG1/Pho81/XPR1) domain-containing protein | 839559 | IEA | |||
ath | ATU2AF35A | ☆ | U2 snRNP auxiliary factor small subunit | 839657 | IEA | ||
ath | ML5 | ☆☆ | MEI2-like protein 5 | 839816 | IBA | ||
ath | SCL33 | ☆☆ | SC35-like splicing factor 33 | 841976 | IBA,IDA | ||
ath | AT1G55460 | ☆☆☆ | DNA/RNA-binding protein Kin17, conserved region | 841993 | IDA | ||
ath | ULP1D | UB-like protease 1D | 842317 | IEA | |||
ath | AtRZ-1b | ☆☆☆ | RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein | 842359 | IDA | ||
ath | AT1G60830 | RNA-binding (RRM/RBD/RNP motifs) family protein | 842376 | IBA | |||
ath | AT1G60900 | ☆☆☆ | U2 snRNP auxilliary factor, large subunit, splicing factor | 842382 | IBA,IDA | ||
ath | AT1G61620 | ☆ | phosphoinositide binding protein | 842458 | IDA | ||
ath | AT1G76940 | ☆ | RNA-binding (RRM/RBD/RNP motifs) family protein | 844029 | IEA | ||
ath | SKIP | ☆☆ | chromatin protein family | 844055 | IEA | ||
ath | LZF1 | ☆☆ | light-regulated zinc finger protein 1 | 844196 | IDA | ||
ath | AT4G26288 | hypothetical protein | 5008166 | IBA |