Coexpression PCA detail

gma 

Platform: gma-r.c6-0

PC1	PC2	PC3	PC4	PC5	PC6	PC7	PC8	PC9	PC10
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Loading 1 SRP041622 Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress loading run annotation attributes 2.4684 SRR1268094 1.196 SRR1268099 0.5664 SRR1268083 -0.8253 SRR1268098 -1.0676 SRR1268092 -1.1347 SRR1268093 2 SRP058975 Daytime soybean transcriptome fluctuations during water deficit stress loading run annotation attributes 1.9865 SRR2048181 source_name leaves_ZT8_16h_water_deficit 1.4807 SRR2048193 source_name leaves_ZT16_24h_water_deficit 1.1237 SRR2048186 source_name leaves_ZT12_20h_water_deficit -1.1543 SRR2048198 source_name leaves_ZT20_4h_water_deficit -1.3672 SRR2048178 source_name leaves_ZT4_12h_control -1.6724 SRR2048201 source_name leaves_ZT20_4h_control 3 SRP045061 Transcriptomics of weed stress in soybean loading run annotation attributes 1.8416 SRR1531428 treatment Weedy" with weeds being naturally occurring velvetleaf and weedy common sunflower (Helianthus annuus) at denisties of about 160 m-2 | cummulative precipitation at sampling 24.2 cm | temperature at sampling 26.1 C | sampling date 2011-06-29 1.3822 SRR1531421 treatment Control" with weeds controlled by application of Glyphosate was used at 1.2 L ha-3 | cummulative precipitation at sampling 19.4 cm | temperature at sampling 25.6 C | sampling date 2010-06-22 0.8139 SRR1531422 treatment Control" with weeds controlled by application of Roundup Weather Max (glyphosate) -1.1802 SRR1531424 treatment Weedy" with weeds being a natural population of velvetleaf and buckwheat at denisties of about 300 m-2 | cummulative precipitation at sampling 12.4 cm | temperature at sampling 23.9 C | sampling date 2008-06-23 -1.2202 SRR1531425 treatment Weedy" with weeds being a natural population of velvetleaf and buckwheat at denisties of about 48 m-2 | cummulative precipitation at sampling 9.9 cm | temperature at sampling 27.2 C | sampling date 2009-06-25 -1.262 SRR1531418 treatment Control" with weeds controlled by application of Dual II Magnum (S-metolachlor) (1.9 L ha-1) on May 22 | cummulative precipitation at sampling 12.4 cm | temperature at sampling 23.9 C | sampling date 2008-06-23 4 SRP017638 Using RNA-Seq to Profile Soybean Seed Development from Fertilization to Maturity loading run annotation attributes 1.7938 SRR639165 source_name whole seed | Stage 12-14 days after flowering | preservation fresh frozen | purification none 1.6743 SRR639167 source_name whole seed | Stage 22-24 days after flowering | preservation fresh frozen | purification none 1.5165 SRR639169 source_name whole seed | Stage 5-6mg fresh weight | preservation fresh frozen | purification none -1.0018 SRR639174 source_name whole seed | Stage dry mature seed | preservation room temperature | purification Qiagen Rneasy Midi kit -1.0603 SRR639162 source_name whole seed | Stage 4 days after flowering | preservation fresh frozen | purification none -1.296 SRR639170 source_name cotyledon | Stage 100-200mg fresh weight | preservation lyophilized | purification Qiagen Rneasy Midi kit 5 SRP218737 Interactions of gene expression, alternative splicing, and DNA methylation in determining nodule identity loading run annotation attributes 1.7156 SRR9995607 source_name Mock treated root tissue | tissue Root | age 25 days 0.7806 SRR9995606 source_name Mock treated root tissue | tissue Root | age 25 days 0.6005 SRR9995614 source_name Bradyrhizobium diazoefficiens USDA110 | tissue Nodule | age 25 days -0.6869 SRR9995605 source_name Mock treated root tissue | tissue Root | age 25 days -0.7398 SRR9995611 source_name Bradyrhizobium diazoefficiens USDA110 | tissue Nodule | age 15 days -0.8331 SRR9995609 source_name Mock treated root tissue | tissue Root | age 39 days 6 SRP113229 Inference of transcription regulatory network in low phytic acid soybean seeds loading run annotation attributes 1.6687 SRR5852842 developmental stage 3 | genotype MIPS1/MRP-L/MRP-N | seed length 6-8 mm 1.3467 SRR5852792 developmental stage 2 | genotype mips1/mrp-l/mrp-n | seed length 4-6 mm 1.2399 SRR5852794 developmental stage 2 | genotype mips1/mrp-l/mrp-n | seed length 4-6 mm -1.0133 SRR5852815 developmental stage 4 | genotype MIPS1/MRP-L/MRP-N | seed length 8-10 mm -1.0226 SRR5852801 developmental stage 5 | genotype mips1/mrp-l/mrp-n | seed length 10-12 mm -1.4998 SRR5852831 developmental stage 5 | genotype mips1/MRP-L/MRP-N | seed length 10-12 mm 7 ERP016957 Comparison of root transcriptomes in four soybean cultivars with high and low isoflavonoid content loading run annotation attributes 1.4395 ERR1597722 Illumina HiSeq 2000 paired end sequencing; Comparison of root transcriptomes in four soybean cultivars with high and low isoflavonoid content External Id SAMEA4395177 | Submitter Id E-MTAB-4929:AC Glengarry 3 | cultivar AC Glengarry | metabolic process 1.4 | phenotype Low Isoflavonoid | sample name E-MTAB-4929:AC Glengarry 3 1.0922 ERR1597717 Illumina HiSeq 2000 paired end sequencing; Comparison of root transcriptomes in four soybean cultivars with high and low isoflavonoid content External Id SAMEA4395172 | Submitter Id E-MTAB-4929:AC Colombe 1 | cultivar AC Colombe | metabolic process 7.1 | phenotype High Isoflavonoid | sample name E-MTAB-4929:AC Colombe 1 0.5053 ERR1597719 Illumina HiSeq 2000 paired end sequencing; Comparison of root transcriptomes in four soybean cultivars with high and low isoflavonoid content External Id SAMEA4395174 | Submitter Id E-MTAB-4929:AC Colombe 3 | cultivar AC Colombe | metabolic process 7.1 | phenotype High Isoflavonoid | sample name E-MTAB-4929:AC Colombe 3 -0.28 ERR1597727 Illumina HiSeq 2000 paired end sequencing; Comparison of root transcriptomes in four soybean cultivars with high and low isoflavonoid content External Id SAMEA4395182 | Submitter Id E-MTAB-4929:Pagoda 2 | cultivar Pagoda | metabolic process 1.8 | phenotype Low Isoflavonoid | sample name E-MTAB-4929:Pagoda 2 -0.8013 ERR1597720 Illumina HiSeq 2000 paired end sequencing; Comparison of root transcriptomes in four soybean cultivars with high and low isoflavonoid content External Id SAMEA4395175 | Submitter Id E-MTAB-4929:AC Glengarry 1 | cultivar AC Glengarry | metabolic process 1.4 | phenotype Low Isoflavonoid | sample name E-MTAB-4929:AC Glengarry 1 -2.1069 ERR1597726 Illumina HiSeq 2000 paired end sequencing; Comparison of root transcriptomes in four soybean cultivars with high and low isoflavonoid content External Id SAMEA4395181 | Submitter Id E-MTAB-4929:Pagoda 1 | cultivar Pagoda | metabolic process 1.8 | phenotype Low Isoflavonoid | sample name E-MTAB-4929:Pagoda 1 8 SRP044048 RNA-seq analysis reveals genetic response and tolerance mechanisms to ozone exposure in soybean loading run annotation attributes 1.4139 SRR1506104 ozone level 75ppb | time point 4 0.5783 SRR1506095 ozone level 75ppb | time point 2 0.4625 SRR1506102 ozone level 25ppb | time point 4 -0.5299 SRR1506098 ozone level 75ppb | time point 3 -0.5916 SRR1506101 ozone level 25ppb | time point 4 -0.7885 SRR1506091 ozone level 75ppb | time point 1 9 SRP352917 High-resolution translatome analysis reveals cortical cell programs during early soybean nodulation loading run annotation attributes 1.3952 SRR17382443 treatment Mock for 96 h 1.2002 SRR17382442 treatment Mock for 96 h 0.8048 SRR17382444 treatment Mock for 96 h -1.1043 SRR17382450 treatment Treated with Bj for 72 h -1.3238 SRR17382449 treatment Treated with Bj for 72 h -1.4488 SRR17382448 treatment Treated with Bj for 72 h 10 SRP108748 Transcriptomes of 102 soybean accessions loading run annotation attributes 1.3828 SRR5655602 cultivar PI 518.751 1.2829 SRR5655604 cultivar PI 404.188A 1.0805 SRR5655580 cultivar NE3001 -1.5425 SRR5655657 cultivar Dare -1.7022 SRR5655650 cultivar Zane -1.7866 SRR5655642 cultivar Harosoy	Loading 1 SRP344348 Expression analysis of reciprocal grafted of near-isogenic soybean lines under iron stress loading run annotation attributes 0.8287 SRR16760908 cultivar Clark | accession PI 548533 | age 30 minutes after transfer | tissue 1st trifoliolate leaflets | graft_combination G1 (Clk/Clk) | treatment Deficient iron | biological_replicate Rep 3 of 3 0.8258 SRR16760955 cultivar L65-1255 (IsoClark) | accession PI 547430 | age 120 minutes after transfer | tissue 1st trifoliolate leaflets | graft_combination G2 (Iso/Clk) | treatment Sufficient iron | biological_replicate Rep 1 of 3 0.8215 SRR18100532 cultivar Clark | accession PI 548533 | age 30 minutes after transfer | tissue 1st trifoliolate leaflets | graft_combination G1 (Clk/Clk) | treatment Deficient iron | biological_replicate Rep 3 of 3 -0.7804 SRR18100619 cultivar Clark | accession PI 548533 | age 120 minutes after transfer | tissue whole root | graft_combination G1 (Clk/Clk) | treatment Sufficient iron | biological_replicate Rep 1 of 3 -0.7856 SRR16760979 cultivar Clark | accession PI 548533 | age 120 minutes after transfer | tissue whole root | graft_combination G1 (Clk/Clk) | treatment Sufficient iron | biological_replicate Rep 1 of 3 -0.7879 SRR16760975 cultivar Clark | accession PI 548533 | age 120 minutes after transfer | tissue whole root | graft_combination G1 (Clk/Clk) | treatment Sufficient iron | biological_replicate Rep 2 of 3 2 SRP318006 Next Generation Sequencing Quantitative Analysis of soybean seeds Transcriptomes loading run annotation attributes 0.7732 SRR14369664 source_name leaf | tissue leaf | genotype Wild type | treatment untreated 0.7217 SRR14369666 source_name leaf | tissue leaf | genotype Wild type | treatment untreated 0.6926 SRR14369665 source_name leaf | tissue leaf | genotype Wild type | treatment untreated -0.6967 SRR14369673 source_name root | tissue root | genotype Transgenic soybean | treatment 150 mM NaCl for 6h -0.7029 SRR14369674 source_name root | tissue root | genotype Transgenic soybean | treatment 150 mM NaCl for 6h -0.7096 SRR14369675 source_name root | tissue root | genotype Transgenic soybean | treatment 150 mM NaCl for 6h 3 SRP253558 Glycine max DGE loading run annotation attributes 0.7665 SRR11362883 isolate MPL-1 | tissue leave 0.7483 SRR11362875 isolate WPL-1 | tissue leave 0.4257 SRR11362879 isolate MPL-3 | tissue leave -0.6372 SRR11362877 isolate MPR-2 | tissue root -0.6423 SRR11362880 isolate WPR-3 | tissue root -0.6672 SRR11362876 isolate MPR-3 | tissue root 4 SRP006767 Genome-Wide Transcript Profiling During Soybean Seed Development and Throughout the Soybean Life Cycle loading run annotation attributes 0.6244 SRR203363 source_name Trifoliate leaves | tissue leaves 0.2822 SRR203367 source_name Floral buds | tissue floral buds 0.2806 SRR203366 source_name Floral buds | tissue floral buds -0.2556 SRR203362 source_name Dry seeds | tissue whole seeds | developmental stage dry -0.2619 SRR203361 source_name Dry seeds | tissue whole seeds | developmental stage dry -0.5818 SRR203364 source_name Roots | tissue roots 5 SRP017937 Single-base resolution DNA methylomes of soybean recombinant inbred lines reveals heritability patterns of natural methylation variants (RNA-seq) loading run annotation attributes 0.5816 SRR648509 source_name Trifoliolate leaves from three-week-old plants | ecotype LDX | genotype LDX | treatment 190 mmol PAR m-2s-1, 230C, 60% R.H., 16 h photoperiod, and 5 ml of mock solution [autoclaved ddiH2O plus equivalent amount of dimethyl sulfoxide (DMSO; Fisher Scientific) 0.4308 SRR648516 source_name Trifoliolate leaves from three-week-old plants | ecotype R-11272 | genotype RIL-11272 | treatment 190 mmol PAR m-2s-1, 230C, 60% R.H., 16 h photoperiod, and 5 ml of mock solution [autoclaved ddiH2O plus equivalent amount of dimethyl sulfoxide (DMSO; Fisher Scientific) 0.3078 SRR648507 source_name Trifoliolate leaves from three-week-old plants | ecotype LD | genotype LD | treatment 190 mmol PAR m-2s-1, 230C, 60% R.H., 16 h photoperiod, and 5 ml of mock solution [autoclaved ddiH2O plus equivalent amount of dimethyl sulfoxide (DMSO; Fisher Scientific) -0.2714 SRR648498 source_name Trifoliolate leaves from three-week-old plants treated with MAMPs | ecotype LDX | genotype LDX | treatment 190 mmol PAR m-2s-1, 230C, 60% R.H., 16 h photoperiod, and 5 ml of MAMP solution [1 uM flagellin 22 (flg22; Genescript) and 50 ug of crab shell chitin (referred to as chitin in this study; Sigma-Aldrich)] -0.2778 SRR648500 source_name Trifoliolate leaves from three-week-old plants treated with MAMPs | ecotype R-11268 | genotype RIL-11268 | treatment 190 mmol PAR m-2s-1, 230C, 60% R.H., 16 h photoperiod, and 5 ml of MAMP solution [1 uM flagellin 22 (flg22; Genescript) and 50 ug of crab shell chitin (referred to as chitin in this study; Sigma-Aldrich)] -0.3479 SRR648495 source_name Trifoliolate leaves from three-week-old plants treated with MAMPs | ecotype LD | genotype LD | treatment 190 mmol PAR m-2s-1, 230C, 60% R.H., 16 h photoperiod, and 5 ml of MAMP solution [1 uM flagellin 22 (flg22; Genescript) and 50 ug of crab shell chitin (referred to as chitin in this study; Sigma-Aldrich)] 6 SRP147745 Global transcriptome analysis of resistant and susceptible soybean lines following Sclerotinia sclerotiorum infection loading run annotation attributes 0.5641 SRR7172315 infection time 0hr | plant phenotype resistant 0.5585 SRR7172326 infection time 0hr | plant phenotype susceptible 0.5356 SRR7172327 infection time 0hr | plant phenotype susceptible -0.4186 SRR7172336 infection time 96hr | plant phenotype susceptible -0.4597 SRR7172324 infection time 96hr | plant phenotype resistant -0.5707 SRR7172337 infection time 96hr | plant phenotype susceptible 7 SRP288277 GmNAC81 involved in leaf senecence and drought stress loading run annotation attributes 0.5491 SRR12883241 source_name BR16 at V3 developmental stage | genotype Wild Type | developmental stage V3 0.4368 SRR12883247 source_name GmNAC81-3 at V3 developmental stage | genotype GmNAC81 overexpression | developmental stage V3 0.2881 SRR12883243 source_name BR16 at V3 developmental stage | genotype Wild Type | developmental stage V3 -0.3444 SRR12883251 source_name GmNAC81-3 at R6 developmental stage | genotype GmNAC81 overexpression | developmental stage R6 -0.3772 SRR12883244 source_name BR16 at R6 developmental stage | genotype Wild Type | developmental stage R6 -0.4492 SRR12883246 source_name BR16 at R6 developmental stage | genotype Wild Type | developmental stage R6 8 SRP017324 Transcription factors and glyoxylate cycle genes prominent in the transition of soybean cotyledons to the first functional leaves of the seedling loading run annotation attributes 0.5447 SRR620386 Stage 5-6 days after planting 0.4403 SRR620387 Stage 5-6 days after planting 0.4361 SRR620383 Stage 3-4 days after planting -0.2684 SRR620379 Stage 2 days after planting -0.4368 SRR620378 Stage 2 days after planting -0.5548 SRR620376 Stage 1 day after imbibition 9 SRP038111 Glycine max strain:Williams 82 Transcriptome or Gene expression loading run annotation attributes 0.5426 SRR1174227 tissue Leafbud2 0.4644 SRR1174226 tissue Leaf1 0.4273 SRR1174229 tissue Leaf2 -0.2937 SRR1174206 tissue Leaf3 -0.2958 SRR1174220 tissue Flower4 -0.7239 SRR1174205 tissue Root 10 SRP107212 RNA-sequencing of GmWRKY54 over-expression and null plants loading run annotation attributes 0.4865 SRR5569796 transgenic line A004A | condition well watered | replicate 2 0.4854 SRR5569800 transgenic line A005B | condition well watered | replicate 2 0.4854 SRR5569797 transgenic line A004A | condition well watered | replicate 2 -0.5066 SRR5569824 transgenic line B010C | condition dehydrated | replicate 2 -0.5105 SRR5569822 transgenic line B010C | condition dehydrated | replicate 1 -0.5112 SRR5569823 transgenic line B010C | condition dehydrated | replicate 1	Loading 1 SRP048326 Gene Expression Profiling of Glycine max Cotyledons and Trifoliate Leaves to Determine Genes Associated with Senescence loading run annotation attributes 0.5177 SRR1592305 source_name 6 weeks after V3 stage | develomental stage 6 weeks after V3 stage | tissue Leaf 0.5137 SRR1636718 source_name 27 days after planting | develomental stage 27 days after planting | tissue Cotyledon 0.507 SRR1592293 source_name 27 days after planting | develomental stage 27 days after planting | tissue Cotyledon -0.5531 SRR1636704 source_name 4 days after planting | develomental stage 4 days after planting | tissue Cotyledon -0.5551 SRR1636705 source_name 4 days after planting | develomental stage 4 days after planting | tissue Cotyledon -0.6196 SRR1592295 source_name V3 stage | develomental stage V3 Stage | tissue Leaf 2 SRP108748 Transcriptomes of 102 soybean accessions loading run annotation attributes 0.5278 SRR5655576 cultivar LD02-9050 0.5186 SRR5655575 cultivar LD02-4485 0.4909 SRR5655564 cultivar TN05-3027 -0.5668 SRR5655634 cultivar Clark -0.5721 SRR5655648 cultivar Williams -0.5943 SRR5655655 cultivar Tracy 3 SRP017638 Using RNA-Seq to Profile Soybean Seed Development from Fertilization to Maturity loading run annotation attributes 0.5229 SRR639175 source_name whole seed | Stage dry mature seed | preservation room temperature | purification none 0.4064 SRR639174 source_name whole seed | Stage dry mature seed | preservation room temperature | purification Qiagen Rneasy Midi kit 0.2541 SRR639173 source_name cotyledon | Stage 400-500mg fresh weight | preservation lyophilized | purification Qiagen Rneasy Midi kit -0.4429 SRR639168 source_name whole seed | Stage 5-6mg fresh weight | preservation fresh frozen | purification none -0.4435 SRR639164 source_name whole seed | Stage 12-14 days after flowering | preservation fresh frozen | purification none -0.5876 SRR639162 source_name whole seed | Stage 4 days after flowering | preservation fresh frozen | purification none 4 SRP076718 Large-scale analysis of soybean embryonic axis in five time points during germination loading run annotation attributes 0.4071 SRR3680390 source_name Embryonic axis 6 hours after imbibition | time after imbibition 6 hours 0.4044 SRR3680391 source_name Embryonic axis 6 hours after imbibition | time after imbibition 6 hours 0.3979 SRR3680388 source_name Embryonic axis 6 hours after imbibition | time after imbibition 6 hours -0.3756 SRR3680416 source_name Embryonic axis 24 hours after imbibition | time after imbibition 24 hours -0.4648 SRR3680389 source_name Embryonic axis 6 hours after imbibition | time after imbibition 6 hours -0.584 SRR3680399 source_name Embryonic axis 12 hours after imbibition | time after imbibition 12 hours 5 SRP044048 RNA-seq analysis reveals genetic response and tolerance mechanisms to ozone exposure in soybean loading run annotation attributes 0.3584 SRR1506092 ozone level 75ppb | time point 1 0.316 SRR1506102 ozone level 25ppb | time point 4 0.2586 SRR1506096 ozone level 75ppb | time point 2 -0.3681 SRR1506090 ozone level 25ppb | time point 1 -0.3909 SRR1506099 ozone level 25ppb | time point 3 -0.5779 SRR1506100 ozone level 25ppb | time point 3 6 SRP021139 Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos loading run annotation attributes 0.5247 SRR830209 age 55 days post initial seed size of 3-4 mm long 0.503 SRR830210 age 55 days post initial seed size of 3-4 mm long 0.4512 SRR830211 age 55 days post initial seed size of 3-4 mm long -0.5409 SRR830188 age 15 days post initial seed size of 3-4 mm long -0.546 SRR830193 age 20 days post initial seed size of 3-4 mm long -0.5663 SRR830192 age 20 days post initial seed size of 3-4 mm long 7 SRP026401 Glycine max strain:Gongxuan 1 Transcriptome or Gene expression loading run annotation attributes 0.5255 SRR924144 isolate Mature leaves in full sunlight, replicate 2 | label M_FS_rep2 0.4977 SRR926172 isolate Mature leaves in shade, replicate 3 | label M_SH_rep3 0.4219 SRR926170 isolate Mature leaves in shade, replicate 1 | label M_SH_rep1 -0.4666 SRR926178 isolate Young leaves in shade, replicate 3 | label Y_SH_rep3 -0.4921 SRR926173 isolate Young leaves in full sunlight, replicate 1 | label Y_FS_rep1 -0.5346 SRR926175 isolate Young leaves in full sunlight, replicate 3 | label Y_FS_rep3 8 SRP235579 A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean loading run annotation attributes 0.4842 SRR10640814 genotype P203_antixenotic | Stage 48 hours after infestation | treatment infestation 0.4182 SRR10640811 genotype P203_antixenotic | Stage 48 hours after infestation | treatment mock 0.3715 SRR10640821 genotype P203_antixenotic | Stage 96 hours after infestation | treatment infestation -0.472 SRR10640831 genotype P746_antibiotic | Stage 48 hours after infestation | treatment infestation -0.4755 SRR10640787 genotype Dongnong47_susceptible | Stage 24 hours after infestation | treatment mock -0.5123 SRR10640805 genotype P203_antixenotic | Stage 24 hours after infestation | treatment mock 9 SRP372425 Glycine max Transcriptome or Gene expression loading run annotation attributes 0.5202 SRR18934807 genotype V1 Wildtype replicate 1 in SD 0.4888 SRR18934813 genotype V1 Transgenic FT3a replicate 2 in SD 0.4867 SRR18934814 genotype V1 Transgenic FT3a replicate 1 in SD -0.4572 SRR18934798 genotype R1 Wildtype replicate 1 in SD -0.4579 SRR18934804 genotype R1 Transgenic FT3a replicate 1 in SD -0.5073 SRR18934800 genotype R1 Wildtype replicate 2 in LD 10 SRP082228 Molecular Analysis of Sink Limited Soybeans loading run annotation attributes 0.3596 SRR4036095 source_name Line Williams 82_Depodding_Control4 | line Line Williams 82 | time point 64 days after planting | sample group Control 0.3404 SRR4036100 source_name Line Williams 82_Depodding_Control5 | line Line Williams 82 | time point 76 days after planting | sample group Control 0.3398 SRR4036093 source_name Line Williams 82_Depodding_Control4 | line Line Williams 82 | time point 64 days after planting | sample group Control -0.4159 SRR4036080 source_name Line Williams 82_AP1 | line Line Williams 82 | time point 38 days after planting (R2 growth stage) | sample group Initial timepoint -0.4978 SRR4036078 source_name Line Williams 82_AP1 | line Line Williams 82 | time point 38 days after planting (R2 growth stage) | sample group Initial timepoint -0.506 SRR4036064 source_name Line T295H_SterileAP1 | line Line T295H | time point 28 Days after planting (R2 growth stage) | sample group Initial timepoint	Loading 1 SRP108527 Gene Expression Changes during embryo and seed maturation, quiescence and germination in soybean loading run annotation attributes 0.375 SRR5639251 source_name Soybean Dry Seed | tissue seed | developmental stage mature, dry seed 0.3579 SRR5639247 source_name Soybean Late Maturation-stage Embryo | tissue embryo | developmental stage late maturation 0.3438 SRR5639249 source_name Soybean Dry Seed | tissue seed | developmental stage mature, dry seed -0.6137 SRR5639254 source_name Soybean Seedling 8 DAI | tissue seedling | developmental stage 8 day after seed sowing -0.6347 SRR5639252 source_name Soybean Seedling 8 DAI | tissue seedling | developmental stage 8 day after seed sowing -0.6706 SRR5639253 source_name Soybean Seedling 8 DAI | tissue seedling | developmental stage 8 day after seed sowing 2 SRP139351 Transcriptome analysis of embryonic axes of soybean seeds germinating in the presence of the gibberellin (GA) biosynthesis inhibitor paclobutrazol (PBZ) loading run annotation attributes 0.5865 SRR6967109 source_name 12HAI_embryonic axis | time after imbibition 12 hours 0.5632 SRR6967113 source_name 12HAI_PBZ_embryonic axis | time after imbibition 12 hours 0.5574 SRR6967112 source_name 12HAI_PBZ_embryonic axis | time after imbibition 12 hours -0.5843 SRR6967120 source_name 36HAI_embryonic axis | time after imbibition 36 hours -0.6046 SRR6967123 source_name 36HAI_PBZ_embryonic axis | time after imbibition 36 hours -0.6145 SRR6967124 source_name 36HAI_PBZ_embryonic axis | time after imbibition 36 hours 3 SRP006767 Genome-Wide Transcript Profiling During Soybean Seed Development and Throughout the Soybean Life Cycle loading run annotation attributes 0.5811 SRR5906387 source_name Soybean seeds containing late-maturation-stage embryos | tissue whole seeds | developmental stage late-maturation-stage embryos 0.4865 SRR203362 source_name Dry seeds | tissue whole seeds | developmental stage dry 0.4449 SRR203361 source_name Dry seeds | tissue whole seeds | developmental stage dry -0.5033 SRR203369 source_name Whole seedlings six days after imbibition | tissue whole seedlings | developmental stage 6 days after imbibition -0.5318 SRR203368 source_name Whole seedlings six days after imbibition | tissue whole seedlings | developmental stage 6 days after imbibition -0.5589 SRR203365 source_name Stems | tissue stems 4 SRP017324 Transcription factors and glyoxylate cycle genes prominent in the transition of soybean cotyledons to the first functional leaves of the seedling loading run annotation attributes 0.5471 SRR620377 Stage 1 day after imbibition 0.3937 SRR620379 Stage 2 days after planting 0.3345 SRR620381 Stage 2-3 days after planting -0.3838 SRR620387 Stage 5-6 days after planting -0.5425 SRR620388 Stage 6-7 days after planting -0.544 SRR620389 Stage 6-7 days after planting 5 SRP076718 Large-scale analysis of soybean embryonic axis in five time points during germination loading run annotation attributes 0.3866 SRR3680388 source_name Embryonic axis 6 hours after imbibition | time after imbibition 6 hours 0.381 SRR3680392 source_name Embryonic axis 6 hours after imbibition | time after imbibition 6 hours 0.3785 SRR3680390 source_name Embryonic axis 6 hours after imbibition | time after imbibition 6 hours -0.4814 SRR3680411 source_name Embryonic axis 24 hours after imbibition | time after imbibition 24 hours -0.4831 SRR3680409 source_name Embryonic axis 24 hours after imbibition | time after imbibition 24 hours -0.4834 SRR3680412 source_name Embryonic axis 24 hours after imbibition | time after imbibition 24 hours 6 SRP235579 A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean loading run annotation attributes 0.4193 SRR10640801 genotype Dongnong47_susceptible | Stage 96 hours after infestation | treatment infestation 0.4121 SRR10640838 genotype P746_antibiotic | Stage 96 hours after infestation | treatment infestation 0.3439 SRR10640836 genotype P746_antibiotic | Stage 96 hours after infestation | treatment mock -0.4009 SRR10640808 genotype P203_antixenotic | Stage 24 hours after infestation | treatment infestation -0.4091 SRR10640804 genotype P203_antixenotic | Stage 24 hours after infestation | treatment mock -0.4683 SRR10640809 genotype P203_antixenotic | Stage 24 hours after infestation | treatment infestation 7 SRP021098 Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage loading run annotation attributes 0.4165 SRR827655 source_name Soybean Early Maturation Stage-Axis Parenchyma | tissue source seeds ranging 6.0-7.0mm in length | seed compartments/tissue Soybean Early Maturation Stage-Axis Parenchyma 0.408 SRR827686 source_name Soybean Early Maturation Stage-Root Tip | tissue source seeds ranging 6.0-7.0mm in length | seed compartments/tissue Soybean Early Maturation Stage-Root Tip 0.4004 SRR1298602 source_name Soybean Early Maturation Stage-Axis Epidermis | seed compartments/tissue Soybean Early Maturation Stage-Axis Epidermis -0.3824 SRR1298689 source_name Soybean Early Maturation Seed Coat Parenchyma | seed compartments/tissue Soybean Early Maturation Seed Coat Parenchyma -0.389 SRR1298690 source_name Soybean Early Maturation Seed Coat Parenchyma | seed compartments/tissue Soybean Early Maturation Seed Coat Parenchyma -0.446 SRR1298686 source_name Soybean Early Maturation Seed Coat Palisade | seed compartments/tissue Soybean Early Maturation Seed Coat Palisade 8 SRP191510 Treanscriptomes of emering nodules, mature nodules, emerging lateral roots, and young lateral roots in soybean loading run annotation attributes 0.5316 SRR8868872 source_name dissected emerging lateral roots | tissue lateral root | developmental stage emerging 0.3971 SRR8868874 source_name dissected emerging lateral roots | tissue lateral root | developmental stage emerging 0.3846 SRR8868873 source_name dissected emerging lateral roots | tissue lateral root | developmental stage emerging -0.381 SRR8868870 source_name dissected root segment above and below mature nodules | tissue root -0.4135 SRR8868881 source_name dissected root segment above and below young lateral roots | tissue root -0.4431 SRR8868883 source_name dissected root segment above and below young lateral roots | tissue root 9 SRP021139 Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos loading run annotation attributes 0.2389 SRR830210 age 55 days post initial seed size of 3-4 mm long 0.1812 SRR830209 age 55 days post initial seed size of 3-4 mm long 0.1638 SRR830208 age 45 days post initial seed size of 3-4 mm long -0.3518 SRR830191 age 20 days post initial seed size of 3-4 mm long -0.3717 SRR830193 age 20 days post initial seed size of 3-4 mm long -0.4251 SRR830192 age 20 days post initial seed size of 3-4 mm long 10 SRP314711 Network Inference of Transcriptional Regulation in Germinating Low Phytic Acid Soybean Seeds loading run annotation attributes 0.3461 SRR14272712 genotype MIPS1 0.3148 SRR14272693 genotype mips1/mrp-l/mrp-n 0.3087 SRR14272703 genotype MIPS1/MRP-L/MRP-N -0.4015 SRR14272725 genotype mips1 -0.4172 SRR14272727 genotype mips1 -0.4245 SRR14231715 genotype MIPS1/mrp-l/mrp-n	Loading 1 SRP017638 Using RNA-Seq to Profile Soybean Seed Development from Fertilization to Maturity loading run annotation attributes 0.6938 SRR639171 source_name cotyledon | Stage 100-200mg fresh weight | preservation lyophilized | purification Qiagen Rneasy Midi kit 0.6683 SRR639170 source_name cotyledon | Stage 100-200mg fresh weight | preservation lyophilized | purification Qiagen Rneasy Midi kit 0.5787 SRR639173 source_name cotyledon | Stage 400-500mg fresh weight | preservation lyophilized | purification Qiagen Rneasy Midi kit -0.4129 SRR639164 source_name whole seed | Stage 12-14 days after flowering | preservation fresh frozen | purification none -0.4554 SRR639165 source_name whole seed | Stage 12-14 days after flowering | preservation fresh frozen | purification none -0.4775 SRR639177 source_name seed coat | Stage 5-6mg fresh weight | preservation fresh frozen | purification none 2 SRP113229 Inference of transcription regulatory network in low phytic acid soybean seeds loading run annotation attributes 0.5778 SRR5852846 developmental stage 5 | genotype MIPS1/MRP-L/MRP-N | seed length 10-12 mm 0.5611 SRR5852830 developmental stage 4 | genotype mips1/MRP-L/MRP-N | seed length 8-10 mm 0.5537 SRR5852833 developmental stage 5 | genotype mips1/MRP-L/MRP-N | seed length 10-12 mm -0.611 SRR5852804 developmental stage 1 | genotype MIPS1/MRP-L/MRP-N | seed length 2-4 mm -0.6341 SRR5852806 developmental stage 1 | genotype MIPS1/MRP-L/MRP-N | seed length 2-4 mm -0.6391 SRR5852819 developmental stage 1 | genotype mips1/MRP-L/MRP-N | seed length 2-4 mm 3 SRP102073 Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines loading run annotation attributes 0.5428 SRR5352358 Stage 5 | genotype mips1/mrp-l/mrp-n | seed length 10-12 mm 0.5378 SRR5352359 Stage 5 | genotype mips1/mrp-l/mrp-n | seed length 10-12 mm 0.5097 SRR5352356 Stage 4 | genotype mips1/mrp-l/mrp-n | seed length 8-10 mm -0.5805 SRR5352346 Stage 1 | genotype mips1/mrp-l/mrp-n | seed length 2-4 mm -0.6237 SRR5352361 Stage 1 | genotype MIPS1/MRP-L/MRP-N | seed length 2-4 mm -0.6494 SRR5352363 Stage 1 | genotype MIPS1/MRP-L/MRP-N | seed length 2-4 mm 4 SRP024277 Glycine max strain:93B15 Transcriptome or Gene expression loading run annotation attributes 0.5318 SRR891260 collection_date 2011 | Block 3 | Treatment Drought 0.5313 SRR923904 collection_date 2011 | Block 3 | Treatment Control 0.4825 SRR923890 collection_date 2012 | Block 2 | Treatment conO3 -0.4527 SRR923898 collection_date 2012 | Block 3 | Treatment tmp -0.4906 SRR891247 collection_date 2011 | Block 1 | Treatment Temp -0.5418 SRR923903 collection_date 2012 | Block 4 | Treatment tmp 5 SRP006767 Genome-Wide Transcript Profiling During Soybean Seed Development and Throughout the Soybean Life Cycle loading run annotation attributes 0.4933 SRR5906386 source_name Soybean seeds containing mid-maturation-stage embryos | tissue whole seeds | developmental stage mid-maturation-stage embryos 0.132 SRR5906387 source_name Soybean seeds containing late-maturation-stage embryos | tissue whole seeds | developmental stage late-maturation-stage embryos 0.1162 SRR203368 source_name Whole seedlings six days after imbibition | tissue whole seedlings | developmental stage 6 days after imbibition -0.2992 SRR203351 source_name Soybean seeds containing globular-stage embryos | tissue whole seeds | developmental stage globular-stage embryo -0.3872 SRR203354 source_name Soybean seeds containing heart-stage embryos | tissue whole seeds | developmental stage heart-stage embryo -0.3933 SRR203355 source_name Soybean seeds containing heart-stage embryos | tissue whole seeds | developmental stage heart-stage embryo 6 SRP108527 Gene Expression Changes during embryo and seed maturation, quiescence and germination in soybean loading run annotation attributes 0.4397 SRR5639244 source_name Soybean Mid Maturation-stage Embryo | tissue embryo | developmental stage mid-maturation 0.4254 SRR5639243 source_name Soybean Mid Maturation-stage Embryo | tissue embryo | developmental stage mid-maturation 0.3879 SRR5639245 source_name Soybean Mid Maturation-stage Embryo | tissue embryo | developmental stage mid-maturation -0.2055 SRR5639251 source_name Soybean Dry Seed | tissue seed | developmental stage mature, dry seed -0.2138 SRR5639250 source_name Soybean Dry Seed | tissue seed | developmental stage mature, dry seed -0.2165 SRR5639249 source_name Soybean Dry Seed | tissue seed | developmental stage mature, dry seed 7 SRP041932 Gene Expression Changes in the Development of the Soybean Seed-Cotyledon Stage loading run annotation attributes 0.4327 SRR1284514 source_name Soybean Cotyledon Stage Embryo Proper Axis | compartment cotyledon Stage Embryo Proper Axis 0.4279 SRR1284512 source_name Soybean Cotyledon Stage Embryo Proper Axis | compartment cotyledon Stage Embryo Proper Axis 0.4165 SRR1284513 source_name Soybean Cotyledon Stage Embryo Proper Axis | compartment cotyledon Stage Embryo Proper Axis -0.3502 SRR1284536 source_name Soybean Cotyledon Stage Seed Coat Hilum | compartment cotyledon Stage Seed Coat Hilum -0.3649 SRR1284532 source_name Soybean Cotyledon Stage Seed Coat Epidermis | compartment cotyledon Stage Seed Coat Epidermis -0.3807 SRR1284535 source_name Soybean Cotyledon Stage Seed Coat Hilum | compartment cotyledon Stage Seed Coat Hilum 8 SRP071924 Transcriptome Profile of Near-isogenic Soybean Lines for a-Subunit Deficiency during Seed Maturation loading run annotation attributes 0.4198 SRR3233844 source_name α-subunit-null_35 DAF_seeds | genotype/variation cgy-2-NIL (near-isogenic line for alpha-subunit null) 0.3892 SRR3233853 source_name normal_35 DAF_seeds | genotype/variation parental DN47; normal 0.3747 SRR3233854 source_name normal_35 DAF_seeds | genotype/variation parental DN47; normal -0.3715 SRR3233839 source_name α-subunit-null_18 DAF_seeds | genotype/variation cgy-2-NIL (near-isogenic line for alpha-subunit null) -0.5205 SRR3233850 source_name normal_18 DAF_seeds | genotype/variation parental DN47; normal -0.5308 SRR3233849 source_name normal_18 DAF_seeds | genotype/variation parental DN47; normal 9 SRP341921 Expression of Arabidopsis WRI1 and DGAT1 during soybean embryo development alters oil and carbohydrate composition loading run annotation attributes 0.3976 SRR16468426 source_name seed | genotype Thorne (WT) | growth condition field | time point R6 | tissue seed 0.3893 SRR16468443 source_name immature embryos | genotype Thorne (WT) | growth condition greenhouse | time point 27 DAP | tissue immature embryos 0.3707 SRR16468445 source_name immature embryos | genotype WD-2 | growth condition greenhouse | time point 24 DAP | tissue immature embryos -0.4271 SRR16468397 source_name seed | genotype W-1 | growth condition field | time point R5 | tissue seed -0.4555 SRR16468399 source_name seed | genotype Thorne (WT) | growth condition field | time point R5 | tissue seed -0.4611 SRR16468401 source_name seed | genotype Thorne (WT) | growth condition field | time point R5 | tissue seed 10 SRP041710 Gene Expression Changes in the Development of the Soybean Seed-Heart Stage loading run annotation attributes 0.3561 SRR1272376 source_name Soybean Heart Stage-Embryo Proper | compartment Embryo Proper 0.3437 SRR1272375 source_name Soybean Heart Stage-Embryo Proper | compartment Embryo Proper 0.3211 SRR1272372 source_name Soybean Heart Stage-Embryo Proper | compartment Embryo Proper -0.2396 SRR1272393 source_name Soybean Heart Stage Seed Coat Hilum | compartment Seed Coat Hilum -0.2397 SRR1272392 source_name Soybean Heart Stage Seed Coat Epidermis | compartment Seed Coat Epidermis -0.2449 SRR1272395 source_name Soybean Heart Stage Seed Coat Hilum | compartment Seed Coat Hilum	Loading 1 SRP235579 A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean loading run annotation attributes 0.4431 SRR10640789 genotype Dongnong47_susceptible | Stage 24 hours after infestation 0.4378 SRR10640808 genotype P203_antixenotic | Stage 24 hours after infestation 0.3924 SRR10640791 genotype Dongnong47_susceptible | Stage 24 hours after infestation -0.2791 SRR10640820 genotype P203_antixenotic | Stage 96 hours after infestation -0.3763 SRR10640821 genotype P203_antixenotic | Stage 96 hours after infestation -0.4949 SRR10640819 genotype P203_antixenotic | Stage 96 hours after infestation 2 SRP288277 GmNAC81 involved in leaf senecence and drought stress loading run annotation attributes 0.4976 SRR12883242 source_name BR16 at V3 developmental stage | genotype Wild Type | developmental stage V3 0.4314 SRR12883243 source_name BR16 at V3 developmental stage | genotype Wild Type | developmental stage V3 0.3698 SRR12883249 source_name GmNAC81-3 at V3 developmental stage | genotype GmNAC81 overexpression | developmental stage V3 -0.4671 SRR12883252 source_name GmNAC81-3 at R6 developmental stage | genotype GmNAC81 overexpression | developmental stage R6 -0.4743 SRR12883250 source_name GmNAC81-3 at R6 developmental stage | genotype GmNAC81 overexpression | developmental stage R6 -0.4792 SRR12883245 source_name BR16 at R6 developmental stage | genotype Wild Type | developmental stage R6 3 SRP221356 A Transcriptional Regulatory Network of Rsv3-mediated Extreme Resistance Against Soybean Mosaic Virus loading run annotation attributes 0.3362 SRR10098758 genotype L29 (Rsv3-genotype 'resistant') 0.3305 SRR10098768 genotype Williams82 (rsv3-genotype 'susceptible') 0.3003 SRR10098767 genotype Williams82 (rsv3-genotype 'susceptible') -0.3797 SRR10098764 genotype L29 (Rsv3-genotype 'resistant') -0.455 SRR10098774 genotype Williams82 (rsv3-genotype 'susceptible') -0.4736 SRR10098763 genotype L29 (Rsv3-genotype 'resistant') 4 SRP058975 Daytime soybean transcriptome fluctuations during water deficit stress loading run annotation attributes 0.5212 SRR2048170 source_name leaves_ZT0_8h_control 0.4615 SRR2048168 source_name leaves_ZT0_8h_water_deficit 0.4556 SRR2048167 source_name leaves_ZT0_8h_water_deficit -0.3532 SRR2048194 source_name leaves_ZT16_24h_control -0.4064 SRR2048195 source_name leaves_ZT16_24h_control -0.469 SRR2048190 source_name leaves_ZT12_20h_control 5 SRP108748 Transcriptomes of 102 soybean accessions loading run annotation attributes 0.2905 SRR5655644 cultivar Hawkeye 0.2656 SRR5655646 cultivar Perry 0.2565 SRR5655660 cultivar Davis -0.4561 SRR5655561 cultivar IA3023 -0.4598 SRR5655563 cultivar IA3023 -0.4655 SRR5655562 cultivar IA3023 6 SRP098160 Circadian transcriptome of soybean unifoliolate leaves loading run annotation attributes 0.4611 SRR5210914 biological replicate 3 0.4562 SRR5210913 biological replicate 3 0.4543 SRR5210915 biological replicate 3 -0.4391 SRR5210852 biological replicate 1 -0.4396 SRR5210941 biological replicate 3 -0.4518 SRR5210942 biological replicate 3 7 SRP148883 mRNA sequencing of field-grown Glycine max whole leaflets at four time points loading run annotation attributes 0.3612 SRR7213994 time 11:00 (ZT5:20) 0.3583 SRR7213989 time 8:00 (ZT 2:20) 0.2968 SRR7213991 time 8:00 (ZT 2:20) -0.3655 SRR7214003 time 17:00 (ZT11:20) -0.3693 SRR7254062 time 17:00 (ZT11:20) -0.4277 SRR7214002 time 17:00 (ZT11:20) 8 SRP082228 Molecular Analysis of Sink Limited Soybeans loading run annotation attributes 0.3836 SRR4036079 source_name Line Williams 82_AP1 | line Line Williams 82 | time point 38 days after planting (R2 growth stage) | sample group Initial timepoint 0.3319 SRR4036080 source_name Line Williams 82_AP1 | line Line Williams 82 | time point 38 days after planting (R2 growth stage) | sample group Initial timepoint 0.3199 SRR4036078 source_name Line Williams 82_AP1 | line Line Williams 82 | time point 38 days after planting (R2 growth stage) | sample group Initial timepoint -0.2929 SRR4036075 source_name Line T295H_Sterile3 | line Line T295H | time point 63 days after planting | sample group Sterile -0.3118 SRR4036068 source_name Line T295H_Sterile_Control2 | line Line T295H | time point 35 days after planting | sample group Control -0.3345 SRR4036067 source_name Line T295H_Sterile_Control2 | line Line T295H | time point 35 days after planting | sample group Control 9 SRP076718 Large-scale analysis of soybean embryonic axis in five time points during germination loading run annotation attributes 0.1796 SRR3680379 source_name Embryonic axis 3 hours after imbibition | time after imbibition 3 hours 0.1771 SRR3680381 source_name Embryonic axis 3 hours after imbibition | time after imbibition 3 hours 0.176 SRR3680382 source_name Embryonic axis 3 hours after imbibition | time after imbibition 3 hours -0.1166 SRR3680401 source_name Embryonic axis 12 hours after imbibition | time after imbibition 12 hours -0.3187 SRR3680389 source_name Embryonic axis 6 hours after imbibition | time after imbibition 6 hours -0.3321 SRR3680399 source_name Embryonic axis 12 hours after imbibition | time after imbibition 12 hours 10 SRP107212 RNA-sequencing of GmWRKY54 over-expression and null plants loading run annotation attributes 0.325 SRR5569815 transgenic line A004A | condition dehydrated | replicate 1 0.3233 SRR5569814 transgenic line A004A | condition dehydrated | replicate 1 0.3127 SRR5569817 transgenic line A004A | condition dehydrated | replicate 2 -0.2849 SRR5569798 transgenic line A005B | condition well watered | replicate 1 -0.3041 SRR5569809 transgenic line B010C | condition well watered | replicate 2 -0.3042 SRR5569808 transgenic line B010C | condition well watered | replicate 2	Loading 1 SRP372583 Transgenic soybeans (Glycine max) secreting Phosphoinositide-3-phosphate binding proteins show enhanced resistance to oomycete pathogen Phytophthora sojae loading run annotation attributes 0.407 SRR18957884 source_name Vmut4#4 | strain non-binding VAM mutant | treatment Inoculated with mycelium of Phytophthora sojae Race 2 0.3729 SRR18957881 source_name VAM13-P1 | strain PI-binding VAM line 13 | treatment Inoculated with mycelium of Phytophthora sojae Race 2 0.3186 SRR18957882 source_name VAM13-P1 | strain PI-binding VAM line 13 | treatment Inoculated with mycelium of Phytophthora sojae Race 2 -0.3194 SRR18957893 source_name GMPH23#11 | strain PI-binding GMPH line C | treatment Inoculated with sterile water -0.3263 SRR18957895 source_name GMPH22#5 | strain PI-binding GMPH line B | treatment Inoculated with sterile water -0.3403 SRR18957892 source_name GMPH23#11 | strain PI-binding GMPH line C | treatment Inoculated with sterile water 2 SRP147745 Global transcriptome analysis of resistant and susceptible soybean lines following Sclerotinia sclerotiorum infection loading run annotation attributes 0.4068 SRR7172333 infection time 48hr | plant phenotype susceptible 0.394 SRR7172332 infection time 48hr | plant phenotype susceptible 0.312 SRR7172337 infection time 96hr | plant phenotype susceptible -0.3563 SRR7172314 infection time 0hr | plant phenotype resistant -0.4713 SRR7172328 infection time 0hr | plant phenotype susceptible -0.4736 SRR7172316 infection time 0hr | plant phenotype resistant 3 SRP026540 Comparative Transcriptomics of Soybean Near Isogenic Lines in Response to Phytophthora Sojae loading run annotation attributes 0.3838 SRR925837 source_name Rps3-c_Inoc, Soybean hypocotyl | line Rps3-c | inoculation P. sojae inoculated 0.3741 SRR925835 source_name Rps3-a_Inoc, Soybean hypocotyl | line Rps3-a | inoculation P. sojae inoculated 0.3565 SRR925838 source_name Rps4_Inoc, Soybean hypocotyl | line Rps4 | inoculation P. sojae inoculated -0.3521 SRR925846 source_name Rps3-a_mock, Soybean hypocotyl | line Rps3-a | inoculation mock-inoculated -0.4082 SRR925847 source_name Rps3-b_mock, Soybean hypocotyl | line Rps3-b | inoculation mock-inoculated -0.4171 SRR925848 source_name Rps3-c_mock, Soybean hypocotyl | line Rps3-c | inoculation mock-inoculated 4 SRP253558 Glycine max DGE loading run annotation attributes 0.3682 SRR11362873 isolate WPL-3 | tissue leave 0.3181 SRR11362874 isolate WPL-2 | tissue leave 0.2514 SRR11362882 isolate MPL-2 | tissue leave -0.0979 SRR11362875 isolate WPL-1 | tissue leave -0.2411 SRR11362878 isolate MPR-1 | tissue root -0.3781 SRR11362872 isolate WPR-1 | tissue root 5 SRP194251 An embryo lethal transgenic line manifests global expression changes and elevated protein/oil ratios in heterozygous soybean plants loading run annotation attributes 0.3556 SRR8991343 source_name Immature cotyledon, 10-25mg fresh weight of whole seed | cultivar Jack mutant | transgenic status Positive | generation 2 0.3438 SRR8991342 source_name Immature cotyledon, 10-25mg fresh weight of whole seed | cultivar Jack mutant | transgenic status Positive | generation 1 0.3421 SRR8991338 source_name Immature cotyledon, 10-25mg fresh weight of whole seed | cultivar Jack mutant | transgenic status Positive | generation 1 -0.3855 SRR8991333 source_name Immature cotyledon, 100-200mg fresh weight of whole seed | cultivar Jack | transgenic status Negative (control) | generation 1 -0.3941 SRR8991335 source_name Immature cotyledon, 100-200mg fresh weight of whole seed | cultivar Jack mutant | transgenic status Negative | generation 1 -0.413 SRR8991332 source_name Immature cotyledon, 100-200mg fresh weight of whole seed | cultivar Jack | transgenic status Negative (control) | generation 1 6 SRP021139 Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos loading run annotation attributes 0.3526 SRR830184 age 5 days post initial seed size of 3-4 mm long 0.3515 SRR830182 age 5 days post initial seed size of 3-4 mm long 0.338 SRR830183 age 5 days post initial seed size of 3-4 mm long -0.2776 SRR830201 age 35 days post initial seed size of 3-4 mm long -0.2819 SRR830195 age 25 days post initial seed size of 3-4 mm long -0.2846 SRR830202 age 35 days post initial seed size of 3-4 mm long 7 SRP041932 Gene Expression Changes in the Development of the Soybean Seed-Cotyledon Stage loading run annotation attributes 0.3486 SRR1284550 source_name Soybean Cotyledon Stage Suspensor | compartment cotyledon Stage Suspensor 0.309 SRR1284551 source_name Soybean Cotyledon Stage Suspensor | compartment cotyledon Stage Suspensor 0.2663 SRR1284548 source_name Soybean Cotyledon Stage Suspensor | compartment cotyledon Stage Suspensor -0.3768 SRR1284545 source_name Soybean Cotyledon Stage Seed Coat Outer Integument | compartment cotyledon Stage Seed Coat Outer Integument -0.4321 SRR1284546 source_name Soybean Cotyledon Stage Seed Coat Outer Integument | compartment cotyledon Stage Seed Coat Outer Integument -0.4735 SRR1284547 source_name Soybean Cotyledon Stage Seed Coat Outer Integument | compartment cotyledon Stage Seed Coat Outer Integument 8 SRP041710 Gene Expression Changes in the Development of the Soybean Seed-Heart Stage loading run annotation attributes 0.3366 SRR1272412 source_name Soybean Heart Stage-Suspensor | compartment Suspensor 0.2837 SRR1272413 source_name Soybean Heart Stage-Suspensor | compartment Suspensor 0.2759 SRR1272410 source_name Soybean Heart Stage-Suspensor | compartment Suspensor -0.33 SRR1272407 source_name Soybean Heart Stage Seed Coat Outer Integument | compartment Seed Coat Outer Integument -0.3627 SRR1272409 source_name Soybean Heart Stage Seed Coat Outer Integument | compartment Seed Coat Outer Integument -0.3726 SRR1272408 source_name Soybean Heart Stage Seed Coat Outer Integument | compartment Seed Coat Outer Integument 9 SRP017638 Using RNA-Seq to Profile Soybean Seed Development from Fertilization to Maturity loading run annotation attributes 0.3291 SRR639176 source_name cotyledon | Stage 5-6mg fresh weight | preservation fresh frozen | purification none 0.1047 SRR639162 source_name whole seed | Stage 4 days after flowering | preservation fresh frozen | purification none 0.0516 SRR639164 source_name whole seed | Stage 12-14 days after flowering | preservation fresh frozen | purification none -0.0617 SRR639168 source_name whole seed | Stage 5-6mg fresh weight | preservation fresh frozen | purification none -0.099 SRR639173 source_name cotyledon | Stage 400-500mg fresh weight | preservation lyophilized | purification Qiagen Rneasy Midi kit -0.1243 SRR639177 source_name seed coat | Stage 5-6mg fresh weight | preservation fresh frozen | purification none 10 SRP082228 Molecular Analysis of Sink Limited Soybeans loading run annotation attributes 0.3188 SRR4036099 source_name Line Williams 82_Depodding_Control5 | line Line Williams 82 | time point 76 days after planting | sample group Control 0.3097 SRR4036100 source_name Line Williams 82_Depodding_Control5 | line Line Williams 82 | time point 76 days after planting | sample group Control 0.2293 SRR4036074 source_name Line T295H_Sterile_Control3 | line Line T295H | time point 63 days after planting | sample group Control -0.2172 SRR4036069 source_name Line T295H_Sterile2 | line Line T295H | time point 35 days after planting | sample group Sterile -0.2301 SRR4036064 source_name Line T295H_SterileAP1 | line Line T295H | time point 28 Days after planting (R2 growth stage) | sample group Initial timepoint -0.24 SRR4036092 source_name Line Williams 82_Depodding3 | line Line Williams 82 | time point 54 days after planting | sample group Depodded	Loading 1 SRP056137 Transcriptome profiles in compatible and incompatible interactions between soybean and Fusarium oxysporum loading run annotation attributes 0.2592 SRR1914575 hours post inoculation 72 hpi 0.1943 SRR1914588 hours post inoculation 72 hpi 0.187 SRR1914591 hours post inoculation 96 hpi -0.2167 SRR1914580 hours post inoculation 72 hpi -0.2554 SRR1914576 hours post inoculation 72 hpi -0.3707 SRR1914574 hours post inoculation 72 hpi 2 SRP045669 Methylation Affects Transposition and Splicing of a Large CACTA Transposable Element From a MYB Transcription Factor Regulating Anthocyanin Synthase (ANS) Genes in Soybean Seed Coats (RNA-Seq) loading run annotation attributes 0.4021 SRR1555237 genotype/variation RM38-r seed color line | developmental stage 300-400mg seed weight stage 0.1538 SRR1555243 genotype/variation RM38-r seed color line | developmental stage 300-400mg seed weight stage 0.0885 SRR1555232 genotype/variation RM30-R* seed color line | developmental stage 100-200mg seed weight stage -0.1869 SRR1555236 genotype/variation RM30-R* seed color line | developmental stage 300-400mg seed weight stage -0.2203 SRR1555244 genotype/variation RM30-R* seed color line | developmental stage 400-500mg seed weight stage -0.3646 SRR1555245 genotype/variation RM38-r seed color line | developmental stage 400-500mg seed weight stage 3 SRP024277 Glycine max strain:93B15 Transcriptome or Gene expression loading run annotation attributes 0.3089 SRR923884 collection_date 2011 | Block 4 | Treatment Temp 0.2692 SRR891260 collection_date 2011 | Block 3 | Treatment Drought 0.2684 SRR923904 collection_date 2011 | Block 3 | Treatment Control -0.3061 SRR923901 collection_date 2012 | Block 4 | Treatment O3 -0.3179 SRR923887 collection_date 2012 | Block 1 | Treatment O3 -0.363 SRR923894 collection_date 2012 | Block 3 | Treatment conO3 4 SRP108748 Transcriptomes of 102 soybean accessions loading run annotation attributes 0.3664 SRR5655659 cultivar Ransom 0.3271 SRR5655658 cultivar Pickett 0.2779 SRR5655656 cultivar Brim -0.2785 SRR5655611 cultivar Capital -0.2943 SRR5655638 cultivar Merit -0.3252 SRR5655612 cultivar dunfield 5 SRP028137 Genes Differentially Expressed in Slow Wilting Phenotypes under a High Vapor Pressure Deficit loading run annotation attributes 0.309 SRR942074 phenotype fast wilting | cultivar Hutchesen | treatment low vapor pressure 0.3018 SRR942079 phenotype slow wilting | cultivar PI471938 | treatment low vapor pressure 0.2673 SRR942070 phenotype slow wilting | cultivar PI416937 | treatment high vapor pressure -0.1602 SRR942069 phenotype slow wilting | cultivar PI471938 | treatment high vapor pressure -0.3105 SRR942076 phenotype slow wilting | cultivar PI416937 | treatment low vapor pressure -0.325 SRR942073 phenotype fast wilting | cultivar Hutchesen | treatment high vapor pressure 6 SRP341921 Expression of Arabidopsis WRI1 and DGAT1 during soybean embryo development alters oil and carbohydrate composition loading run annotation attributes 0.311 SRR16468412 genotype WD-2 | time point 30 DAP 0.2863 SRR16468413 genotype WD-2 | time point 30 DAP 0.2657 SRR16468406 genotype WD-1 | time point 33 DAP -0.2644 SRR16468417 genotype Thorne (WT) | time point 30 DAP -0.287 SRR16468414 genotype WD-1 | time point 30 DAP -0.3174 SRR16468416 genotype WD-1 | time point 30 DAP 7 SRP372583 Transgenic soybeans (Glycine max) secreting Phosphoinositide-3-phosphate binding proteins show enhanced resistance to oomycete pathogen Phytophthora sojae loading run annotation attributes 0.2664 SRR18957890 source_name GMPH23#11 | strain PI-binding GMPH line C | treatment Inoculated with mycelium of Phytophthora sojae Race 2 0.2624 SRR18957875 source_name GMPH22#5 | strain PI-binding GMPH line B | treatment Inoculated with mycelium of Phytophthora sojae Race 2 0.2488 SRR18957880 source_name VAM19#12 | strain PI-binding VAM line 19 | treatment Inoculated with mycelium of Phytophthora sojae Race 2 -0.2422 SRR18957904 source_name Vmut4#4 | strain non-binding VAM mutant | treatment Inoculated with sterile water -0.2926 SRR18957909 source_name | strain null segregant | treatment Inoculated with sterile water -0.3133 SRR18957902 source_name VAM13-P1 | strain PI-binding VAM line 13 | treatment Inoculated with sterile water 8 SRP026540 Comparative Transcriptomics of Soybean Near Isogenic Lines in Response to Phytophthora Sojae loading run annotation attributes 0.2391 SRR925833 source_name Rps1-c_Inoc, Soybean hypocotyl | line Rps1-c | inoculation P. sojae inoculated 0.2244 SRR925830 source_name Williams_Inoc, Soybean hypocotyl | line Williams | inoculation P. sojae inoculated 0.21 SRR925839 source_name Rps5_Inoc, Soybean hypocotyl | line Rps5 | inoculation P. sojae inoculated -0.2698 SRR925846 source_name Rps3-a_mock, Soybean hypocotyl | line Rps3-a | inoculation mock-inoculated -0.3072 SRR925844 source_name Rps1-c_mock, Soybean hypocotyl | line Rps1-c | inoculation mock-inoculated -0.3132 SRR925845 source_name Rps1-k_mock, Soybean hypocotyl | line Rps1-k | inoculation mock-inoculated 9 SRP044048 RNA-seq analysis reveals genetic response and tolerance mechanisms to ozone exposure in soybean loading run annotation attributes 0.2618 SRR1506092 ozone level 75ppb | time point 1 0.1974 SRR1506093 ozone level 25ppb | time point 2 0.1929 SRR1506089 ozone level 25ppb | time point 1 -0.2564 SRR1506094 ozone level 25ppb | time point 2 -0.2828 SRR1506100 ozone level 25ppb | time point 3 -0.3016 SRR1506090 ozone level 25ppb | time point 1 10 SRP270671 Combination of drought and heat in soybean plants loading run annotation attributes 0.3088 SRR12164949 treatment No treatment 0.2031 SRR12164953 treatment Heat stress 0.1621 SRR12164954 treatment Heat stress -0.1651 SRR12164956 treatment Combined stress -0.2802 SRR12164957 treatment Combined stress -0.3011 SRR12164958 treatment Combined stress	Loading 1 SRP048326 Gene Expression Profiling of Glycine max Cotyledons and Trifoliate Leaves to Determine Genes Associated with Senescence loading run annotation attributes 0.4308 SRR1592303 source_name 4 weeks after V3 stage | develomental stage 4 weeks after V3 stage | tissue Leaf 0.3942 SRR1592301 source_name 4 weeks after V3 stage | develomental stage 4 weeks after V3 stage | tissue Leaf 0.3835 SRR1592302 source_name 4 weeks after V3 stage | develomental stage 4 weeks after V3 stage | tissue Leaf -0.3478 SRR1592287 source_name 4 days after planting | develomental stage 4 days after planting | tissue Cotyledon -0.349 SRR1636707 source_name 4 days after planting | develomental stage 4 days after planting | tissue Cotyledon -0.3506 SRR1636706 source_name 4 days after planting | develomental stage 4 days after planting | tissue Cotyledon 2 SRP059912 Comparative analysis of drought-responsive transcriptome in soybean lines contrasting for canopy wilting loading run annotation attributes 0.4241 SRR2079644 phenotype Drought Susceptible | treatment Control condition 0.3929 SRR2079642 phenotype Drought Susceptible | treatment Control condition 0.0929 SRR2079646 phenotype Drought Susceptible | treatment Drought stressed for 15 days -0.1762 SRR2079649 phenotype Drought Tolerant | treatment Control condition -0.2018 SRR2079650 phenotype Drought Tolerant | treatment Control condition -0.212 SRR2079648 phenotype Drought Tolerant | treatment Control condition 3 SRP235579 A genome-wide view of transcriptional responses during Aphis glycines Matsumura infestation in soybean loading run annotation attributes 0.4229 SRR10640804 genotype P203_antixenotic | Stage 24 hours after infestation | treatment mock 0.3575 SRR10640823 genotype P746_antibiotic | Stage 24 hours after infestation | treatment mock 0.2236 SRR10640829 genotype P746_antibiotic | Stage 48 hours after infestation | treatment mock -0.2412 SRR10640802 genotype Dongnong47_susceptible | Stage 96 hours after infestation | treatment infestation -0.2598 SRR10640801 genotype Dongnong47_susceptible | Stage 96 hours after infestation | treatment infestation -0.2818 SRR10640838 genotype P746_antibiotic | Stage 96 hours after infestation | treatment infestation 4 SRP147745 Global transcriptome analysis of resistant and susceptible soybean lines following Sclerotinia sclerotiorum infection loading run annotation attributes 0.3532 SRR7172328 infection time 0hr | plant phenotype susceptible 0.2961 SRR7172316 infection time 0hr | plant phenotype resistant 0.276 SRR7172325 infection time 96hr | plant phenotype resistant -0.3 SRR7172336 infection time 96hr | plant phenotype susceptible -0.3073 SRR7172333 infection time 48hr | plant phenotype susceptible -0.3441 SRR7172332 infection time 48hr | plant phenotype susceptible 5 SRP372425 Glycine max Transcriptome or Gene expression loading run annotation attributes 0.3389 SRR18934812 genotype V1 Transgenic FT3a replicate 3 in SD 0.3312 SRR18934816 genotype V1 Transgenic FT3a replicate 2 in LD 0.3261 SRR18934815 genotype V1 Transgenic FT3a replicate 3 in LD -0.3323 SRR18934803 genotype R1 Transgenic FT3a replicate 2 in SD -0.3368 SRR18934799 genotype R1 Wildtype replicate 3 in LD -0.3627 SRR18934802 genotype R1 Transgenic FT3a replicate 3 in SD 6 SRP082228 Molecular Analysis of Sink Limited Soybeans loading run annotation attributes 0.3272 SRR4036094 source_name Line Williams 82_Depodding_Control4 | line Line Williams 82 | time point 64 days after planting | sample group Control 0.3128 SRR4036089 source_name Line Williams 82_Depodding_Control3 | line Line Williams 82 | time point 54 days after planting | sample group Control 0.3027 SRR4036093 source_name Line Williams 82_Depodding_Control4 | line Line Williams 82 | time point 64 days after planting | sample group Control -0.2116 SRR4036071 source_name Line T295H_Sterile2 | line Line T295H | time point 35 days after planting | sample group Sterile -0.2959 SRR4036063 source_name Line T295H_SterileAP1 | line Line T295H | time point 28 Days after planting (R2 growth stage) | sample group Initial timepoint -0.3111 SRR4036064 source_name Line T295H_SterileAP1 | line Line T295H | time point 28 Days after planting (R2 growth stage) | sample group Initial timepoint 7 SRP038111 Glycine max strain:Williams 82 Transcriptome or Gene expression loading run annotation attributes 0.3133 SRR1174228 tissue Cotyledon2 0.2984 SRR1174226 tissue Leaf1 0.2749 SRR1174229 tissue Leaf2 -0.1755 SRR1174233 tissue Seed5 -0.1863 SRR1174207 tissue Seed4 -0.2035 SRR1174217 tissue Flower2 8 SRP368162 Glycine max Transcriptome or Gene expression loading run annotation attributes 0.3044 SRR18681923 cultivar Heinong44 | treatment 44CK3 0.2478 SRR18681925 cultivar Heinong65 | treatment 65DPC2 0.1922 SRR18681916 cultivar Heinong65 | treatment 65DPC1 -0.1985 SRR18681921 cultivar Heinong44 | treatment 44DPC2 -0.2458 SRR18681922 cultivar Heinong44 | treatment 44DPC1 -0.2611 SRR18681918 cultivar Heinong65 | treatment 65CK2 9 SRP021139 Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos loading run annotation attributes 0.2989 SRR830182 age 5 days post initial seed size of 3-4 mm long 0.2914 SRR830184 age 5 days post initial seed size of 3-4 mm long 0.2734 SRR830183 age 5 days post initial seed size of 3-4 mm long -0.2083 SRR830201 age 35 days post initial seed size of 3-4 mm long -0.2147 SRR830204 age 40 days post initial seed size of 3-4 mm long -0.2213 SRR830196 age 25 days post initial seed size of 3-4 mm long 10 SRP028137 Genes Differentially Expressed in Slow Wilting Phenotypes under a High Vapor Pressure Deficit loading run annotation attributes 0.2892 SRR942068 phenotype fast wilting | cultivar Hutchesen | treatment high vapor pressure 0.2705 SRR942071 phenotype slow wilting | cultivar PI416937 | treatment high vapor pressure 0.2052 SRR942072 phenotype slow wilting | cultivar PI471938 | treatment high vapor pressure -0.2263 SRR942076 phenotype slow wilting | cultivar PI416937 | treatment low vapor pressure -0.2785 SRR942077 phenotype fast wilting | cultivar Hutchesen | treatment low vapor pressure -0.3375 SRR942078 phenotype slow wilting | cultivar PI416937 | treatment low vapor pressure	Loading 1 SRP006767 Genome-Wide Transcript Profiling During Soybean Seed Development and Throughout the Soybean Life Cycle loading run annotation attributes 0.4641 SRR5906386 source_name Soybean seeds containing mid-maturation-stage embryos | tissue whole seeds | developmental stage mid-maturation-stage embryos 0.3933 SRR203359 source_name Soybean seeds containing early-maturation stage seeds | tissue whole seeds | developmental stage early maturation-stage embryo 0.3932 SRR203360 source_name Soybean seeds containing early-maturation stage seeds | tissue whole seeds | developmental stage early maturation-stage embryo -0.2757 SRR203367 source_name Floral buds | tissue floral buds -0.4401 SRR203368 source_name Whole seedlings six days after imbibition | tissue whole seedlings | developmental stage 6 days after imbibition -0.4441 SRR203369 source_name Whole seedlings six days after imbibition | tissue whole seedlings | developmental stage 6 days after imbibition 2 SRP038111 Glycine max strain:Williams 82 Transcriptome or Gene expression loading run annotation attributes 0.3594 SRR1174225 tissue seed2 0.3563 SRR1174207 tissue Seed4 0.3386 SRR1174208 tissue Seed3 -0.1314 SRR1174231 tissue Shoot_meristem -0.1887 SRR1174214 tissue Stem1 -0.2609 SRR1174213 tissue Stem1 3 SRP108527 Gene Expression Changes during embryo and seed maturation, quiescence and germination in soybean loading run annotation attributes 0.3338 SRR5639244 source_name Soybean Mid Maturation-stage Embryo | tissue embryo | developmental stage mid-maturation 0.3259 SRR5639243 source_name Soybean Mid Maturation-stage Embryo | tissue embryo | developmental stage mid-maturation 0.2911 SRR5639245 source_name Soybean Mid Maturation-stage Embryo | tissue embryo | developmental stage mid-maturation -0.3693 SRR5639253 source_name Soybean Seedling 8 DAI | tissue seedling | developmental stage 8 day after seed sowing -0.3856 SRR5639254 source_name Soybean Seedling 8 DAI | tissue seedling | developmental stage 8 day after seed sowing -0.3892 SRR5639252 source_name Soybean Seedling 8 DAI | tissue seedling | developmental stage 8 day after seed sowing 4 SRP105213 Expression profiling of Glycine max seed maturation by high throughput sequencing loading run annotation attributes 0.3301 SRR5481107 developmental stage stage 7.1 | treatment fresh 0.3298 SRR5481104 developmental stage stage 7.1 | treatment fresh 0.3294 SRR5481101 developmental stage stage 7.1 | treatment fresh -0.1796 SRR5481150 developmental stage stage 7.2 | treatment dried -0.1807 SRR5481139 developmental stage stage 7.2 | treatment dried -0.1817 SRR5481144 developmental stage stage 7.2 | treatment dried 5 SRP045669 Methylation Affects Transposition and Splicing of a Large CACTA Transposable Element From a MYB Transcription Factor Regulating Anthocyanin Synthase (ANS) Genes in Soybean Seed Coats (RNA-Seq) loading run annotation attributes 0.307 SRR1555235 genotype/variation RM38-r seed color line | developmental stage 200-300mg seed weight stage 0.2242 SRR1555238 genotype/variation RM30-R* seed color line | developmental stage 400-500mg seed weight stage 0.22 SRR1555239 genotype/variation RM38-r seed color line | developmental stage 400-500mg seed weight stage -0.0444 SRR1555243 genotype/variation RM38-r seed color line | developmental stage 300-400mg seed weight stage -0.23 SRR1555240 genotype/variation RM30-R* seed color line | developmental stage 300-400mg seed weight stage (desiccating) -0.3021 SRR1555241 genotype/variation RM38-r seed color line | developmental stage 300-400mg seed weight stage (desiccating) 6 SRP041710 Gene Expression Changes in the Development of the Soybean Seed-Heart Stage loading run annotation attributes 0.306 SRR1272400 source_name Soybean Heart Stage Seed Coat Inner Integument | compartment Seed Coat Inner Integument 0.2925 SRR1272403 source_name Soybean Heart Stage Seed Coat Inner Integument | compartment Seed Coat Inner Integument 0.2897 SRR1272401 source_name Soybean Heart Stage Seed Coat Inner Integument | compartment Seed Coat Inner Integument -0.2281 SRR1272372 source_name Soybean Heart Stage-Embryo Proper | compartment Embryo Proper -0.232 SRR1272373 source_name Soybean Heart Stage-Embryo Proper | compartment Embryo Proper -0.3562 SRR1272376 source_name Soybean Heart Stage-Embryo Proper | compartment Embryo Proper 7 SRP041932 Gene Expression Changes in the Development of the Soybean Seed-Cotyledon Stage loading run annotation attributes 0.3033 SRR1284543 source_name Soybean Cotyledon Stage Seed Coat Inner Integument | compartment cotyledon Stage Seed Coat Inner Integument 0.3029 SRR1284542 source_name Soybean Cotyledon Stage Seed Coat Inner Integument | compartment cotyledon Stage Seed Coat Inner Integument 0.2947 SRR1284541 source_name Soybean Cotyledon Stage Seed Coat Inner Integument | compartment cotyledon Stage Seed Coat Inner Integument -0.3444 SRR1284514 source_name Soybean Cotyledon Stage Embryo Proper Axis | compartment cotyledon Stage Embryo Proper Axis -0.366 SRR1284516 source_name Soybean Cotyledon Stage Embryo Proper Axis | compartment cotyledon Stage Embryo Proper Axis -0.3813 SRR1284513 source_name Soybean Cotyledon Stage Embryo Proper Axis | compartment cotyledon Stage Embryo Proper Axis 8 SRP191510 Treanscriptomes of emering nodules, mature nodules, emerging lateral roots, and young lateral roots in soybean loading run annotation attributes 0.2907 SRR8868867 source_name dissected mature nodules | tissue nodule | developmental stage mature 0.2748 SRR8868868 source_name dissected mature nodules | tissue nodule | developmental stage mature 0.2192 SRR8868866 source_name dissected mature nodules | tissue nodule | developmental stage mature -0.1281 SRR8868870 source_name dissected root segment above and below mature nodules | tissue root -0.2177 SRR8868883 source_name dissected root segment above and below young lateral roots | tissue root -0.2326 SRR8868881 source_name dissected root segment above and below young lateral roots | tissue root 9 SRP017638 Using RNA-Seq to Profile Soybean Seed Development from Fertilization to Maturity loading run annotation attributes 0.2766 SRR639177 source_name seed coat | Stage 5-6mg fresh weight | preservation fresh frozen | purification none 0.1723 SRR639171 source_name cotyledon | Stage 100-200mg fresh weight | preservation lyophilized | purification Qiagen Rneasy Midi kit 0.1255 SRR639176 source_name cotyledon | Stage 5-6mg fresh weight | preservation fresh frozen | purification none -0.003 SRR639163 source_name whole seed | Stage 4 days after flowering | preservation fresh frozen | purification none -0.1563 SRR639175 source_name whole seed | Stage dry mature seed | preservation room temperature | purification none -0.1811 SRR639174 source_name whole seed | Stage dry mature seed | preservation room temperature | purification Qiagen Rneasy Midi kit 10 SRP071924 Transcriptome Profile of Near-isogenic Soybean Lines for a-Subunit Deficiency during Seed Maturation loading run annotation attributes 0.2716 SRR3233854 source_name normal_35 DAF_seeds | genotype/variation parental DN47; normal 0.2515 SRR3233856 source_name normal_50 DAF_seeds | genotype/variation parental DN47; normal 0.2339 SRR3233853 source_name normal_35 DAF_seeds | genotype/variation parental DN47; normal -0.1266 SRR3233840 source_name α-subunit-null_18 DAF_seeds | genotype/variation cgy-2-NIL (near-isogenic line for alpha-subunit null) -0.2353 SRR3233848 source_name α-subunit-null_55 DAF_seeds | genotype/variation cgy-2-NIL (near-isogenic line for alpha-subunit null) -0.3083 SRR3233847 source_name α-subunit-null_55 DAF_seeds | genotype/variation cgy-2-NIL (near-isogenic line for alpha-subunit null)
Upper 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC100788630 aspartyl protease AED3 100788630 GLYMA_04G091800 71.45 PRP1 repetitive proline-rich cell wall protein 1 100795066 GLYMA_09G092700 68.90 GASA33 gibberellin-regulated protein 33 100527019 GLYMA_19G013000 68.06 LOC100816307 aspartyl protease AED3 100816307 GLYMA_06G093600 67.69 LOC100819758 L-ascorbate oxidase homolog 100819758 GLYMA_17G012300 67.54 LOC100803167 protein trichome birefringence-like 38 100803167 GLYMA_07G205200 67.23 LOC100802731 UPF0481 protein At3g47200 100802731 GLYMA_03G114900 67.03 LOC102660146 protein SMAX1-LIKE 4 102660146 GLYMA_15G167000 66.29 LOC100819698 aspartic proteinase nepenthesin-1-like 100819698 GLYMA_13G196200 65.91 LOC100813994 lysine-rich arabinogalactan protein 18 100813994 GLYMA_05G102100 65.88 LOC100792715 36.4 kDa proline-rich protein 100792715 GLYMA_20G062700 65.75 LOC100777646 pectinesterase/pectinesterase inhibitor 100777646 GLYMA_07G046033v4 65.42 LOC100801173 thaumatin-like protein 1 100801173 GLYMA_12G031200 65.17 LOC100527644 uncharacterized LOC100527644 100527644 GLYMA_18G191800 64.98 LOC100787086 RNA-binding protein 38 100787086 GLYMA_13G089800 64.72 LOC100775446 aspartyl protease AED3 100775446 GLYMA_11G157000 64.53 LOC100785754 protein SMAX1-LIKE 4 100785754 GLYMA_09G060500 64.47 LOC100787611 AP2-like ethylene-responsive transcription factor ANT 100787611 GLYMA_05G108600 64.19 GASA34 gibberellin-regulated protein 34 100305480 GLYMA_19G022500 64.09 LOC100809695 leucine-rich repeat receptor-like protein kinase TDR 100809695 GLYMA_12G006300 63.92 GASA21 gibberellin-regulated protein 21 100527676 GLYMA_13G069900 63.92 LOC100499716 extensin-like protein 100499716 GLYMA_17G139700 63.83 LOC100813189 leucine-rich repeat receptor-like protein kinase TDR 100813189 GLYMA_09G230300 63.56 LOC547871 peroxidase 547871 GLYMA_12G195500 63.48 LOC106799047 FT-interacting protein 3-like 106799047 GLYMA_01G219200 63.45 LOC100819285 NDR1/HIN1-like protein 1 100819285 GLYMA_11G179900 63.42 LOC100788516 RNA-binding protein 38 100788516 GLYMA_14G174600 63.36 BZIP112 putative bZIP domain class transcription factor 100101884 GLYMA_13G272500 63.28 LOC100792196 alpha-amylase inhibitor/lipid transfer/seed storage family protein 100792196 GLYMA_13G005500 63.19 LOC100790527 ethylene-overproduction protein 1 100790527 GLYMA_18G059700 63.19 LOC100789316 probable beta-D-xylosidase 2 100789316 GLYMA_03G218700 62.91 LOC100500078 uncharacterized LOC100500078 100500078 GLYMA_05G021500 62.58 LOC100815779 protein COBRA 100815779 GLYMA_06G205400 62.55 EXPB4 expansin-B3-like 100810778 GLYMA_06G294500 62.39 LOC100776011 L-ascorbate oxidase 100776011 GLYMA_20G051900 62.39 LOC100806005 endo-1,4-beta-xylanase 5 100806005 GLYMA_06G004400 62.35 LOC100797570 uncharacterized LOC100797570 100797570 GLYMA_02G033400 62.34 LOC102660494 leucine-rich repeat receptor-like protein kinase PXC1 102660494 GLYMA_13G150000 62.29 LOC100527769 uncharacterized LOC100527769 100527769 GLYMA_11G120400 62.18 LOC100804126 peroxidase 12 100804126 GLYMA_10G222500 62.16 LOC100305686 uncharacterized LOC100305686 100305686 GLYMA_07G141500 62.04 LOC100799553 arp2/3 complex-activating protein rickA 100799553 GLYMA_12G178200 61.84 LOC100781861 protein NRT1/ PTR FAMILY 4.6 100781861 GLYMA_03G227500 61.78 LOC100817540 peroxidase 100817540 GLYMA_05G103600 61.76 LOC100798347 isoliquiritigenin 2'-O-methyltransferase-like 100798347 GLYMA_20G176100 61.76 LOC100809478 G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 100809478 GLYMA_03G138400 61.75 LOC100787541 uncharacterized LOC100787541 100787541 GLYMA_03G166000 61.71 LOC100809501 probable beta-D-xylosidase 2 100809501 GLYMA_19G215500 61.54 LOC100788182 aspartyl protease AED3-like 100788182 GLYMA_15G234300v4 61.37 LOC100775521 L-ascorbate oxidase homolog 100775521 GLYMA_07G261800 61.29 LOC100798971 monocopper oxidase-like protein SKU5 100798971 GLYMA_17G138300 61.28 LOC100305362 receptor-like protein kinase 100305362 GLYMA_01G168100 61.16 LOC100806759 formin-like protein 1 100806759 GLYMA_09G246200 61.08 BRL2A brassinosteroid receptor-like protein 100305360 GLYMA_05G136900 61.05 LOC100816503 probable pectinesterase/pectinesterase inhibitor 47 100816503 GLYMA_06G314200 61.01 LOC100786744 beta-xylosidase/alpha-L-arabinofuranosidase 2 100786744 GLYMA_08G074700 61.01 LOC100807362 cysteine proteinase RD21a-like 100807362 GLYMA_04G041500 61.00 LOC100779100 patellin-4-like 100779100 GLYMA_15G134400 61.00 LOC102665651 probable pectinesterase/pectinesterase inhibitor 12 102665651 GLYMA_09G076200 60.93 LOC100808488 subtilisin-like protease SBT5.4 100808488 GLYMA_07G269700 60.86 LOC100778240 lysine-rich arabinogalactan protein 18 100778240 GLYMA_17G164800 60.63 LOC100784155 protein NSP-INTERACTING KINASE 2 100784155 GLYMA_17G135000 60.42 LOC100808812 L-ascorbate oxidase 100808812 GLYMA_13G076900 60.35 MYB51 MYB transcription factor MYB51 778077 GLYMA_03G078000 60.32 LOC100306260 uncharacterized LOC100306260 100306260 GLYMA_03G089800 60.23 LOC100797984 probable glucuronoxylan glucuronosyltransferase IRX7 100797984 GLYMA_12G178100 60.22 LOC100820197 basic leucine zipper 34-like 100820197 GLYMA_12G227700v4 60.22 LOC100804656 uncharacterized LOC100804656 100804656 GLYMA_18G017400 60.15 LOC100819630 trans-cinnamate:CoA ligase, peroxisomal 100819630 GLYMA_18G044900 60.11 LOC100785982 xyloglucan endotransglucosylase/hydrolase protein 9 100785982 GLYMA_12G101800 60.04 LOC100527845 uncharacterized LOC100527845 100527845 GLYMA_20G143700 60.03 LOC100784729 probable inactive patatin-like protein 9 100784729 GLYMA_19G156700 59.99 PIP2-4 aquaporin PIP2-4 100811119 GLYMA_12G075400 59.92 LOC100793639 LRR receptor-like serine/threonine-protein kinase GHR1 100793639 GLYMA_15G130900 59.91 LOC100500016 alpha-amylase inhibitor/lipid transfer/seed storage family protein 100500016 GLYMA_17G140000 59.86 LOC100786558 glucan endo-1,3-beta-glucosidase 4 100786558 GLYMA_14G130300 59.83 LOC100811987 proline-rich extensin-like protein EPR1 100811987 GLYMA_12G225500 59.79 LOC100809450 patellin-4 100809450 GLYMA_09G028400 59.78 LOC100798686 protein WALLS ARE THIN 1 100798686 GLYMA_04G027800 59.77 LOC100790397 probable xyloglucan glycosyltransferase 5 100790397 GLYMA_04G076500 59.75 LOC100788318 monocopper oxidase-like protein SKU5 100788318 GLYMA_05G056100 59.62 LOC100792395 protein WALLS ARE THIN 1 100792395 GLYMA_14G216200 59.60 LOC100798323 uncharacterized LOC100798323 100798323 GLYMA_04G064500 59.53 LOC100802593 isoliquiritigenin 2'-O-methyltransferase-like 100802593 GLYMA_20G176950v4 59.48 LOC100802454 AP2-like ethylene-responsive transcription factor ANT 100802454 GLYMA_06G049200 59.44 LOC100794651 RNA-binding protein 38 100794651 GLYMA_06G102400 59.42 LOC100804350 peroxidase 51-like 100804350 GLYMA_11G049600 59.39 LOC100816139 uncharacterized LOC100816139 100816139 GLYMA_06G065800 59.37 LOC100812081 transcription factor bHLH62 100812081 GLYMA_08G346300 59.31 LOC100781372 interactor of constitutive active ROPs 2, chloroplastic 100781372 GLYMA_13G137200 59.31 LOC100782542 probable boron transporter 2 100782542 GLYMA_17G088800v4 59.23 LOC100812276 uncharacterized LOC100812276 100812276 GLYMA_01G009700 59.16 LOC100792451 AP2-like ethylene-responsive transcription factor ANT 100792451 GLYMA_17G158300 59.14 LOC100788899 RNA-binding protein 24 100788899 GLYMA_16G019500 59.14 XTH1 endo-xyloglucan transferase 547775 GLYMA_16G045000 59.14 LOC100787223 AP2-like ethylene-responsive transcription factor ANT 100787223 GLYMA_04G047900 59.11 IQD4 protein IQ-DOMAIN 4 100810189 GLYMA_02G004600 59.10 LOC100814667 ABC transporter B family member 1 100814667 GLYMA_19G184300 59.04 LOC100809631 ankyrin repeat domain-containing protein 13C 100809631 GLYMA_17G012800 59.01 LOC100793449 uncharacterized LOC100793449 100793449 GLYMA_15G217300 59.00	Upper 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC100306307 AAI_LTSS superfamily protein 100306307 GLYMA_17G212200 95.22 SBPRP proline-rich protein 547594 GLYMA_14G115500 89.18 LOC100500372 2Fe-2S ferredoxin-like superfamily protein 100500372 GLYMA_12G169500 89.12 LOC100783267 MLP-like protein 423-like 100783267 GLYMA_02G032300 89.02 LOC100796752 protein HOTHEAD 100796752 GLYMA_05G050100 86.16 LOC100807723 ferredoxin-A 100807723 GLYMA_12G169400 86.01 LHCB1-7 photosystem II type I chlorophyll a/b-binding protein 100800351 GLYMA_16G165800 82.46 LOC100793805 cucumisin 100793805 GLYMA_14G064600 82.08 LOC100799813 chlorophyll a-b binding protein of LHCII type 1 100799813 GLYMA_16G165200 81.42 LOC547576 glutathione S-transferase GST 5 547576 GLYMA_01G040200 80.75 LOC100791176 uncharacterized LOC100791176 100791176 GLYMA_15G089000 79.19 LOC547819 chlorophyll a-b binding protein, chloroplastic 547819 GLYMA_16G165500 78.62 LOC100797696 repetitive proline-rich cell wall protein 1 100797696 GLYMA_15G238600 78.14 LOC100809796 GDSL esterase/lipase At2g04570 100809796 GLYMA_02G266700 77.91 LOC100793645 GDSL esterase/lipase APG 100793645 GLYMA_08G199500 76.74 LOC100780626 uncharacterized LOC100780626 100780626 GLYMA_04G005100 75.34 F3H flavanone 3-hydroxylase 732548 GLYMA_02G048400 75.32 LOC100792794 uncharacterized LOC100792794 100792794 GLYMA_09G067700 75.06 BURP2 BURP domain protein 2 100272209 GLYMA_14G140900 74.92 LOC100796326 chlorophyll a-b binding protein 1D 100796326 GLYMA_16G162600 74.35 LOC100812759 36.4 kDa proline-rich protein 100812759 GLYMA_13G160400 74.33 LOC100817754 aquaporin TIP2-1-like 100817754 GLYMA_15G018100 74.12 LOC100807596 uncharacterized LOC100807596 100807596 GLYMA_06G004900 74.09 LOC113002373 uncharacterized LOC113002373 113002373 GLYMA_08G069300 74.07 LOC100804416 GDSL esterase/lipase 100804416 GLYMA_14G050900 74.06 LOC100815273 GDSL esterase/lipase APG-like 100815273 GLYMA_07G014100 73.74 LOC100815985 glutamyl-tRNA reductase 1, chloroplastic 100815985 GLYMA_14G185700 73.73 LOC100812066 photosystem I chlorophyll a/b-binding protein 6, chloroplastic 100812066 GLYMA_15G179400 73.58 LOC100780028 protein HOTHEAD 100780028 GLYMA_17G132100 73.00 LOC100819256 GDSL esterase/lipase At2g42990 100819256 GLYMA_18G110500 72.98 LOC100799370 expansin-A15 100799370 GLYMA_19G024200 72.93 GER8 germin-like protein 100500326 GLYMA_07G038500 72.82 LOC100170724 BURP domain-containing protein 100170724 GLYMA_14G141000 72.71 LOC100788090 sedoheptulose-1,7-bisphosphatase, chloroplastic 100788090 GLYMA_11G226900 72.35 LOC100819951 glutamyl-tRNA reductase 1, chloroplastic 100819951 GLYMA_02G218300 72.25 LOC100778379 stem 28 kDa glycoprotein 100778379 GLYMA_07G014600 72.17 LOC100306374 putative photosystem II 5 KD protein 100306374 GLYMA_10G089300 71.88 LOC100306676 protein CURVATURE THYLAKOID 1B-like 100306676 GLYMA_19G260600 71.84 LOC100777274 WUSCHEL-related homeobox 1 100777274 GLYMA_05G245900 71.76 LOC100783542 transcription factor bHLH71-like 100783542 GLYMA_01G095500 71.69 LOC100795035 photosystem II 5 kDa protein, chloroplastic 100795035 GLYMA_15G275700 71.63 LOC100810163 GDSL esterase/lipase At3g48460-like 100810163 GLYMA_17G127000 71.39 LOC100795945 rhodanese-like domain-containing protein 10 100795945 GLYMA_01G121700 71.34 LOC100500243 uncharacterized LOC100500243 100500243 GLYMA_07G163600 71.26 LOC100527666 photosystem II reaction center subunit T-like protein 100527666 GLYMA_15G275600 71.08 LOC102667991 GDSL esterase/lipase EXL3 102667991 GLYMA_17G259500 70.98 LOC100775450 GDSL esterase/lipase At5g33370 100775450 GLYMA_19G250167v4 70.84 LOC100811751 lysosomal Pro-X carboxypeptidase 100811751 GLYMA_01G065400 70.49 LOC100788078 glycine-rich protein 5 100788078 GLYMA_18G094300 70.40 FILA YABBY protein FILa 100798441 GLYMA_17G138200 70.23 LOC100816355 germin-like protein 100816355 GLYMA_16G007700 70.13 LOC100527742 trypsin inhibitor 100527742 GLYMA_08G342300 70.09 LOC100777515 phosphoribulokinase, chloroplastic 100777515 GLYMA_01G010200 69.91 VSPA 28 kDa protein 547821 GLYMA_07G014500 69.87 LOC100305808 photosystem II subunit X-like protein 100305808 GLYMA_09G073900 69.73 LOC100500579 kunitz-type trypsin inhibitor 100500579 GLYMA_01G095232v4 69.70 LOC113000734 glycine-rich protein 5 113000734 GLYMA_20G206600 69.65 LOC100787446 transcription factor MYB106 100787446 GLYMA_13G061900 69.59 LOC100790668 protein CURVATURE THYLAKOID 1B, chloroplastic 100790668 GLYMA_16G017600 69.50 LOC100783918 cucumisin 100783918 GLYMA_14G064500 69.33 LOC100526941 alpha-amylase inhibitor/lipid transfer/seed storage protein domain-containing protein 100526941 GLYMA_04G065600 69.32 LOC100306224 uncharacterized LOC100306224 100306224 GLYMA_20G008600 69.27 LOC100813414 GDSL esterase/lipase At5g33370 100813414 GLYMA_03G252700 69.20 RBCS1 Ribulose bisphosphate carboxylase small chain 1, chloroplastic 100500504 GLYMA_13G046200 69.12 LOC100807355 photosystem II 22 kDa protein, chloroplastic 100807355 GLYMA_04G249700 69.07 LOC102668807 GDSL esterase/lipase EXL3 102668807 GLYMA_14G220600 69.04 LOC100786014 proline-rich protein 4 100786014 GLYMA_13G200300 68.95 LOC100306654 uncharacterized LOC100306654 100306654 GLYMA_01G199700 68.92 LOC100808990 hydroxysteroid 11-beta-dehydrogenase 1-like protein-like 100808990 GLYMA_05G203300 68.86 LOC100790960 chlorophyll a-b binding protein 13, chloroplastic-like 100790960 GLYMA_13G282000 68.71 LOC100787404 uncharacterized LOC100787404 100787404 GLYMA_04G161600 68.68 LOC100781249 subtilisin-like protease SBT3 100781249 GLYMA_16G018900 68.65 LOC100305746 putative photosystem I subunit O 100305746 GLYMA_11G181100 68.51 LOC100817704 protein RICE SALT SENSITIVE 3 100817704 GLYMA_04G041700 68.38 LOC100776610 U1 small nuclear ribonucleoprotein C 100776610 GLYMA_08G251500 68.17 LOC100801057 glycine-rich protein 5 100801057 GLYMA_08G319200 68.12 LOC100788943 protein ALTERED XYLOGLUCAN 4 100788943 GLYMA_02G031200 67.81 CYP76O2 7-ethoxycoumarin O-deethylase-like 100789835 GLYMA_10G200800 67.80 LOC100802315 oxygen-evolving enhancer protein 2, chloroplastic 100802315 GLYMA_08G304200 67.62 LOC100816997 3-ketoacyl-CoA synthase 6 100816997 GLYMA_20G115500 67.51 MYB11 MYB11 protein 100101835 GLYMA_19G024700 67.45 LOC100779387 chlorophyll a-b binding protein 13, chloroplastic-like 100779387 GLYMA_12G219300 67.43 LOC100779417 photosystem II 22 kDa protein, chloroplastic-like 100779417 GLYMA_06G113200 67.37 LOC100306253 uncharacterized LOC100306253 100306253 GLYMA_02G259800 67.34 LOC100786175 protein YABBY 7 100786175 GLYMA_05G056000 67.33 LOC100793702 chlorophyll a-b binding protein 151, chloroplastic-like 100793702 GLYMA_02G305400 67.18 LOC100787227 probable glycosyltransferase At3g07620 100787227 GLYMA_20G065300 67.17 LOC100793015 protein CURVATURE THYLAKOID 1B, chloroplastic 100793015 GLYMA_03G261500 67.06 LOC100809697 photosystem I subunit O 100809697 GLYMA_12G092000 66.94 LOC100811620 NAD(P)H-quinone oxidoreductase subunit N, chloroplastic 100811620 GLYMA_18G049600 66.87 LOC100791711 GDSL esterase/lipase At1g29670 100791711 GLYMA_15G089300 66.76 LOC100784115 transcription factor bHLH71 100784115 GLYMA_08G271000 66.64 LOC100800635 GDSL esterase/lipase At5g45670-like 100800635 GLYMA_05G163400 66.44 LOC100789240 aspartyl protease family protein At5g10770 100789240 GLYMA_15G123800 66.19 LOC100807126 phosphoribulokinase, chloroplastic 100807126 GLYMA_09G210900 65.94 LOC100805786 transketolase, chloroplastic 100805786 GLYMA_20G243500 65.63 PIP2-8 aquaporin PIP2-8 100807883 GLYMA_19G181300 65.57 LOC121173856 uncharacterized LOC121173856 121173856 65.51 LOC100781848 oxygen-evolving enhancer protein 2, chloroplastic-like 100781848 GLYMA_18G114900 65.44 LOC100499973 uncharacterized LOC100499973 100499973 GLYMA_01G034000 65.37	Upper 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC100801718 protein DETOXIFICATION 40-like 100801718 69.91 LOC100170710 NAC transcription factor 56 100170710 GLYMA_13G280000 66.46 LOC100818459 protein POST-ILLUMINATION CHLOROPHYLL FLUORESCENCE INCREASE, chloroplastic 100818459 GLYMA_07G029900 59.16 LOC100803306 metal-nicotianamine transporter YSL1 100803306 GLYMA_20G068300 58.02 LOC100809657 protein NRT1/ PTR FAMILY 2.13 100809657 GLYMA_18G127200 57.63 LOC100778102 probable serine/threonine-protein kinase WNK4 100778102 GLYMA_18G054100 57.43 LOC100803175 uncharacterized LOC100803175 100803175 GLYMA_15G111400 55.80 LOC100790141 uncharacterized LOC100790141 100790141 GLYMA_08G213000 55.62 LOC100779094 esterase 100779094 GLYMA_14G150200 53.21 LOC100798788 protein STRICTOSIDINE SYNTHASE-LIKE 4 100798788 GLYMA_09G070500 52.77 LOC100781617 cytochrome P450 71AU50 100781617 GLYMA_08G140600 52.65 LOC100305968 rhodanese-like domain-containing protein 100305968 GLYMA_01G161500 51.52 LOC100775399 uncharacterized LOC100775399 100775399 GLYMA_02G255200 51.23 LOC106798342 uncharacterized LOC106798342 106798342 GLYMA_03G234500 50.78 LOC100810271 putative 12-oxophytodienoate reductase 11 100810271 GLYMA_14G223600 50.69 BG7S-1 basic 7S globulin 547908 GLYMA_03G239700 50.49 NAC11 transcriptional factor NAC11 100301906 GLYMA_19G108800 50.48 LOC100783344 uncharacterized LOC100783344 100783344 50.15 LOC100802519 cationic amino acid transporter 5 100802519 GLYMA_09G050600 49.97 LOC100786630 serine--glyoxylate aminotransferase-like 100786630 GLYMA_18G116900 49.82 SGR2 senescence-inducible chloroplast stay-green protein 2 732541 GLYMA_01G214600 49.57 LOC100806895 plastid-lipid-associated protein, chloroplastic 100806895 GLYMA_15G112500 48.58 PM29 seed maturation protein 548096 GLYMA_05G112000 48.41 LOC100801855 cytochrome P450 83B1 100801855 GLYMA_03G030900 48.37 LOC547636 24 kDa seed coat protein 547636 GLYMA_06G149120v4 48.28 LOC100814289 calvin cycle protein CP12-2, chloroplastic 100814289 GLYMA_10G012900 48.22 LOC100804260 alpha-galactosidase 100804260 GLYMA_16G209800 48.01 LOC100800889 kunitz-type trypsin inhibitor KTI1-like 100800889 GLYMA_08G342100 47.98 LOC732565 serine glyoxylate aminotransferase 3 732565 GLYMA_08G302600 47.96 LOC100811670 NAC transcription factor 56-like 100811670 GLYMA_12G148900 47.92 LOC100779239 defensin-like protein 100779239 GLYMA_13G278000 47.76 LOC100808944 4-coumarate--CoA ligase-like 7 100808944 GLYMA_11G194500 47.53 LOC100499831 senescence-associated protein 100499831 GLYMA_11G082300 47.30 NAC12 NAC domain protein 100170708 GLYMA_16G043200 47.21 LOC100788166 uncharacterized LOC100788166 100788166 GLYMA_14G026100 47.19 LOC100799817 kunitz-type trypsin inhibitor KTI1-like 100799817 GLYMA_08G341800 47.07 LOC100782815 uncharacterized LOC100782815 100782815 GLYMA_05G190100 46.92 LOC100788249 small heat shock protein, chloroplastic 100788249 GLYMA_18G094600 46.91 LOC111255648 uncharacterized LOC111255648 111255648 GLYMA_06G177600 46.86 LOC100805093 pathogen-related protein 100805093 GLYMA_06G123700 46.54 LOC100812118 calvin cycle protein CP12-1, chloroplastic 100812118 GLYMA_02G012500 45.99 LOC100820265 WD repeat-containing protein 43 100820265 GLYMA_15G010600 45.96 LOC100811790 probable E3 ubiquitin-protein ligase XERICO 100811790 GLYMA_18G013800 45.89 PM35 seed maturation protein PM35 547556 GLYMA_17G164200 45.73 LOC100780806 tropinone reductase 100780806 GLYMA_12G059100 45.71 LOC100783357 uncharacterized LOC100783357 100783357 GLYMA_06G235100 45.70 LOC547748 glucan endo-1,3-beta-glucosidase 547748 GLYMA_11G095100 45.70 LOC100499938 BSP domain-containing protein 100499938 GLYMA_20G130000 45.69 LOC100792182 uncharacterized LOC100792182 100792182 GLYMA_20G031200 45.65 LOC100781585 protein C2-DOMAIN ABA-RELATED 7 100781585 GLYMA_07G219900 45.65 LOC100802964 potassium channel AKT1 100802964 GLYMA_06G071100 45.57 LOC100780780 cytochrome P450 72A68-like 100780780 GLYMA_03G226800v4 45.54 LOC100783985 protein NRT1/ PTR FAMILY 1.2 100783985 GLYMA_17G189300 45.45 LOC100306482 uncharacterized LOC100306482 100306482 GLYMA_13G193800 45.44 LOC102660360 uncharacterized LOC102660360 102660360 GLYMA_05G191500 45.41 LOC100800236 cytochrome P450 71A1 100800236 GLYMA_03G030600 45.40 AP2-8 dehydration-responsive element-binding protein 2C-like 100798277 GLYMA_02G261700 45.34 LOC100306114 uncharacterized LOC100306114 100306114 GLYMA_18G129800 45.30 LOC100499926 homeobox associated leucine zipper-containing protein 100499926 GLYMA_04G231400 45.18 LOC100801528 ethylene-responsive transcription factor RAP2-1 100801528 GLYMA_04G041200 45.16 LOC100801312 cytochrome P450 83B1 100801312 GLYMA_03G030800 44.95 LOC100804482 uncharacterized LOC100804482 100804482 GLYMA_18G231800 44.92 LOC100784578 NAC transcription factor 56 100784578 GLYMA_12G221400 44.83 LOC100810407 receptor-like serine/threonine-protein kinase SD1-8 100810407 GLYMA_12G140200 44.78 LOC100791989 low-temperature-induced 65 kDa protein 100791989 GLYMA_20G158500 44.75 LOC100805091 uncharacterized LOC100805091 100805091 GLYMA_06G072000 44.57 LOC100815173 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 100815173 GLYMA_18G004000 44.36 LOC100784767 uncharacterized LOC100784767 100784767 GLYMA_05G126800 44.33 CIF1 cell-wall inhibitor of beta-fructosidase 100306719 GLYMA_17G036300 44.09 LOC100783778 7-deoxyloganetic acid glucosyltransferase 100783778 GLYMA_01G021700 44.07 LOC100795128 mogroside IE synthase 100795128 GLYMA_19G025200 43.96 LOC100809188 cellulose synthase-like protein G2 100809188 GLYMA_13G174300 43.82 LOC100780139 seed biotin-containing protein SBP65 100780139 GLYMA_06G283900 43.66 LOC100781244 flavonol 7-O-beta-glucosyltransferase UGT74F1 100781244 GLYMA_08G125600 43.28 LOC100785395 uncharacterized LOC100785395 100785395 GLYMA_02G288700 43.20 LOC100306610 uncharacterized LOC100306610 100306610 GLYMA_07G139300 43.18 LOC102667475 putative F-box protein At1g67623 102667475 GLYMA_17G026300 43.12 LOC100792588 protein DETOXIFICATION 16 100792588 GLYMA_08G050500 43.10 LOC100799842 uncharacterized LOC100799842 100799842 GLYMA_09G123800 43.01 LOC102659952 uncharacterized LOC102659952 102659952 42.99 LOC100796116 cytochrome P450 71AU50 100796116 GLYMA_08G140500 42.98 LOC112998379 uncharacterized LOC112998379 112998379 GLYMA_11G123300 42.87 LOC100787358 probable aspartic proteinase GIP2 100787358 GLYMA_10G180500 42.83 LOC100808125 probable nucleoredoxin 2 100808125 GLYMA_06G021200 42.71 LOC100807954 beta carbonic anhydrase 5, chloroplastic 100807954 GLYMA_14G181400 42.70 LOC100795709 cellulose synthase-like protein H1 100795709 GLYMA_06G307900 42.70 LOC106794110 LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.5 106794110 GLYMA_13G033400 42.47 LOC100804843 ethylene-responsive transcription factor ABR1 100804843 GLYMA_02G080200 42.45 LOC100818078 glutamate receptor 2.7 100818078 GLYMA_13G233000 42.31 LOC100811301 NAC domain-containing protein 72 100811301 GLYMA_12G149100 42.25 LOC100779800 F-box/kelch-repeat protein At3g23880 100779800 GLYMA_15G101600 42.25 LOC100817546 ethylene-responsive transcription factor ABR1 100817546 GLYMA_05G186700 42.23 MS malate synthase 732628 GLYMA_17G128000 42.22 DREB2A2 dehydration-responsive element-binding protein 2A2 100800134 GLYMA_14G056200 42.20 LOC100791971 probable nucleoredoxin 3 100791971 GLYMA_04G076900 42.16 LOC100818353 uncharacterized LOC100818353 100818353 GLYMA_18G297500 42.09 LOC100777678 ubiquitin-conjugating enzyme E2-17 kDa 100777678 GLYMA_08G267400 42.04 NAC3 NAC domain protein NAC3 732639 GLYMA_06G248900 42.01 LOC100801214 probable E3 ubiquitin-protein ligase HERC4 100801214 GLYMA_14G145800 41.99 LOC100796839 phosphatidate phosphatase PAH2 100796839 GLYMA_17G242900 41.64	Upper 100 Genes Symbol Function* Entrez Gene ID* Other ID PC CP3 cysteine proteinase 547978 GLYMA_10G207100 53.86 LOC100809281 late embryogenesis abundant protein D-34 100809281 GLYMA_10G027600 44.93 PM16 seed maturation protein 548013 GLYMA_17G155000 44.88 LOC100793454 uncharacterized LOC100793454 100793454 GLYMA_07G154700 43.39 LOC100787622 SNF1-related protein kinase regulatory subunit gamma-like PV42a 100787622 GLYMA_13G365800 43.38 LOC100797828 AP2-like ethylene-responsive transcription factor AIL5 100797828 GLYMA_13G096900 43.03 LOC100775390 AP2-like ethylene-responsive transcription factor AIL6 100775390 GLYMA_09G199800 41.66 PM1 late embryogenesis abundant group 4 protein PM1 547828 GLYMA_19G147200 41.48 PM25 seed maturation protein PM25 547535 GLYMA_20G147600 41.09 LOC100780731 hydroxysteroid 11-beta-dehydrogenase 1-like protein-like 100780731 GLYMA_01G227900 41.05 LOC100803985 secoisolariciresinol dehydrogenase 100803985 GLYMA_19G197200 40.71 PM24 seed maturation protein PM24 548019 GLYMA_10G247500 40.64 LOC100778708 uncharacterized LOC100778708 100778708 GLYMA_06G157000 40.23 LOC100777168 AP2-like ethylene-responsive transcription factor AIL6 100777168 GLYMA_01G022500 39.85 PM32 maturation protein pPM32 547553 GLYMA_13G237700 39.51 ABI3-2 B3 domain-containing transcription factor ABI3 100810343 GLYMA_18G176100 39.49 SLE1 Soybean group-1 late embryogenesis abundant protein 1 100779693 GLYMA_18G203500 39.29 PM9 late embryogenesis abundant group 4 protein PM9 547921 GLYMA_03G144400 39.26 LOC100776453 ethylene-responsive transcription factor CRF2 100776453 GLYMA_08G020900 39.00 PM30 seed maturation protein PM30 547996 GLYMA_13G363300 38.90 LOC100785689 SNF1-related protein kinase regulatory subunit gamma-like PV42a 100785689 GLYMA_15G007300 38.71 LOC121174399 5.8S ribosomal RNA 121174399 38.46 PM34 seed maturation protein PM34 547554 GLYMA_20G233000 38.41 LOC112999142 28S ribosomal RNA 112999142 38.37 LOC112999172 28S ribosomal RNA 112999172 38.37 LOC112999141 28S ribosomal RNA 112999141 38.29 LOC112999187 28S ribosomal RNA 112999187 38.27 LOC112999127 28S ribosomal RNA 112999127 38.27 LOC121174460 28S ribosomal RNA 121174460 38.26 LOC112999110 28S ribosomal RNA 112999110 38.24 LOC112999145 28S ribosomal RNA 112999145 38.23 LOC121174435 28S ribosomal RNA 121174435 38.22 LOC112999025 18S ribosomal RNA 112999025 38.22 LOC112999113 28S ribosomal RNA 112999113 38.21 LOC121174458 28S ribosomal RNA 121174458 38.20 LOC112999131 28S ribosomal RNA 112999131 38.20 LOC121174457 28S ribosomal RNA 121174457 38.18 LOC121173392 28S ribosomal RNA 121173392 38.18 LOC112999112 28S ribosomal RNA 112999112 38.15 LOC112999224 28S ribosomal RNA 112999224 38.14 LOC112999212 28S ribosomal RNA 112999212 38.14 LOC112999155 28S ribosomal RNA 112999155 38.13 LOC113001095 5.8S ribosomal RNA 113001095 38.12 LOC112999183 28S ribosomal RNA 112999183 38.11 LOC121174432 28S ribosomal RNA 121174432 38.09 LOC112999122 28S ribosomal RNA 112999122 38.06 LOC112999111 28S ribosomal RNA 112999111 38.06 LOC112999165 28S ribosomal RNA 112999165 38.05 LOC112999171 28S ribosomal RNA 112999171 38.05 LOC112999106 28S ribosomal RNA 112999106 38.05 LOC112999103 28S ribosomal RNA 112999103 38.04 LOC112999162 28S ribosomal RNA 112999162 38.02 LOC112999132 28S ribosomal RNA 112999132 38.02 LOC121174431 28S ribosomal RNA 121174431 38.01 LOC112999140 28S ribosomal RNA 112999140 38.01 LOC112999151 28S ribosomal RNA 112999151 38.01 LOC121174433 28S ribosomal RNA 121174433 38.00 LOC112999121 28S ribosomal RNA 112999121 37.99 LOC112999130 28S ribosomal RNA 112999130 37.98 LOC121174428 28S ribosomal RNA 121174428 37.98 LOC112999200 28S ribosomal RNA 112999200 37.97 LOC112999149 28S ribosomal RNA 112999149 37.96 LOC121173393 28S ribosomal RNA 121173393 37.96 LOC121174459 28S ribosomal RNA 121174459 37.96 LOC112999109 28S ribosomal RNA 112999109 37.95 LOC112999030 18S ribosomal RNA 112999030 37.94 LOC121174429 28S ribosomal RNA 121174429 37.93 LOC112999205 28S ribosomal RNA 112999205 37.92 LOC112999135 28S ribosomal RNA 112999135 37.90 LOC121174410 18S ribosomal RNA 121174410 37.90 LOC112999138 28S ribosomal RNA 112999138 37.89 LOC112999146 28S ribosomal RNA 112999146 37.88 LOC121174434 28S ribosomal RNA 121174434 37.88 LOC112999133 28S ribosomal RNA 112999133 37.88 LOC112999139 28S ribosomal RNA 112999139 37.88 LOC112999154 28S ribosomal RNA 112999154 37.88 LOC112999114 28S ribosomal RNA 112999114 37.87 LOC112999027 18S ribosomal RNA 112999027 37.86 LOC112999134 28S ribosomal RNA 112999134 37.84 LOC100789931 17.5 kDa class I heat shock protein 100789931 GLYMA_07G200000 37.84 LOC121174430 28S ribosomal RNA 121174430 37.83 LOC112999120 28S ribosomal RNA 112999120 37.82 LOC112999026 18S ribosomal RNA 112999026 37.82 LOC112999168 28S ribosomal RNA 112999168 37.80 LOC100798883 galactinol--sucrose galactosyltransferase 100798883 GLYMA_05G040300 37.80 LOC112999185 28S ribosomal RNA 112999185 37.80 LOC112998972 18S ribosomal RNA 112998972 37.79 LOC112999029 18S ribosomal RNA 112999029 37.78 LOC112998994 18S ribosomal RNA 112998994 37.77 LOC112999144 28S ribosomal RNA 112999144 37.77 LOC100787267 dihydroflavonol-4-reductase-like 100787267 GLYMA_06G265700 37.75 LOC112999015 18S ribosomal RNA 112999015 37.75 LOC112999136 28S ribosomal RNA 112999136 37.73 LOC112999006 18S ribosomal RNA 112999006 37.73 LOC100787886 F-box protein At2g27310 100787886 GLYMA_02G148100 37.72 LOC112999047 18S ribosomal RNA 112999047 37.71 LOC121174412 18S ribosomal RNA 121174412 37.70 LOC112999186 28S ribosomal RNA 112999186 37.70 LOC112999039 18S ribosomal RNA 112999039 37.69 LOC112999042 18S ribosomal RNA 112999042 37.68	Upper 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC100790943 uncharacterized LOC100790943 100790943 GLYMA_05G129100 58.56 CG-1 beta-conglycinin alpha prime subunit 548007 GLYMA_10G246300 55.11 LOC100806313 putative phospholipid:diacylglycerol acyltransferase 2 100806313 GLYMA_12G084000 54.78 CHR5 chalcone reductase CHR5 100820161 GLYMA_18G285800 53.21 P89 P24 oleosin isoform A 547918 GLYMA_19G063400 52.01 LOC100527919 cysteine proteinase inhibitor B 100527919 GLYMA_11G253300 50.07 KTI3 Kunitz trypsin inhibitor 547831 GLYMA_08G341500 49.26 LE1 lectin 100818710 GLYMA_02G012600 49.25 LOC100807166 geraniol 8-hydroxylase 100807166 GLYMA_11G108300 48.79 LOC100798287 cytochrome P450 83B1 100798287 GLYMA_18G100500 48.47 GA20OX2 gibberellin 20 oxidase 2 100775693 GLYMA_07G081700 48.33 LOC112999369 uncharacterized LOC112999369 112999369 48.20 LOC100804462 cytochrome P450 78A5 100804462 GLYMA_02G119600 46.61 LOC102661733 uncharacterized LOC102661733 102661733 46.58 CHR6 chalcone reductase CHR6 100800931 GLYMA_02G307300 46.51 LOX2 lipoxygenase-2 547774 GLYMA_13G347500 46.48 LOC547636 24 kDa seed coat protein 547636 GLYMA_06G149120v4 46.33 GY4 glycinin G4 100101841 GLYMA_10G037100 46.06 P34 P34 probable thiol protease 548062 GLYMA_08G116300 45.63 LOX3 lipoxygenase-3 547869 GLYMA_15G026300 45.15 LOC100802561 solute carrier family 40 member 2 100802561 GLYMA_03G042400 45.00 LOC100798055 histidine-containing phosphotransfer protein 4 100798055 GLYMA_08G201100 44.64 LOC102659798 uncharacterized LOC102659798 102659798 GLYMA_11G128800 44.50 GY1 glycinin G1 547901 44.49 LOC100820616 1-Cys peroxiredoxin 100820616 GLYMA_08G088000 44.25 LOC100782933 malonyl-CoA:anthocyanidin 5-O-glucoside-6''-O-malonyltransferase 100782933 GLYMA_18G258000 44.21 LOC100527742 trypsin inhibitor 100527742 GLYMA_08G342300 44.11 CG-3 beta-conglycinin alpha-subunit 547464 43.66 LOC106794094 beta-conglycinin, alpha chain-like 106794094 43.52 LOC100790658 beta-glucosidase 46 100790658 GLYMA_15G105900 43.38 GY5 glycinin gy5 547452 GLYMA_13G123500 43.32 LOC100788951 putative NADPH-dependent aldo-keto reductase 100788951 GLYMA_18G187600 43.06 LOC100800239 organ-specific protein P4-like 100800239 GLYMA_11G119000 43.01 LOC100775426 beta-conglycinin beta subunit 1-like 100775426 GLYMA_10G246500 42.99 LOC100793030 CSC1-like protein At3g54510 100793030 GLYMA_11G152700 42.84 LOC100798680 cell division cycle protein 48 homolog 100798680 GLYMA_04G186000 42.61 LOC100814945 uncharacterized LOC100814945 100814945 GLYMA_08G118100 42.52 LOC100793895 ethylene-responsive transcription factor 2 100793895 GLYMA_03G112100 42.33 LOC100781675 protein SRG1 100781675 GLYMA_18G184900 42.29 LOC100778242 probable transcription factor KAN4 100778242 GLYMA_17G246200 42.28 LOC100818131 zinc finger protein WIP2 100818131 GLYMA_08G154500 42.26 LOC100780895 vicilin-like seed storage protein At2g18540 100780895 GLYMA_01G177000 42.10 LOC100810822 probable polyamine transporter At1g31830 100810822 GLYMA_16G105500 42.08 LOC100814313 potassium transporter 5 100814313 GLYMA_19G263100 41.98 LOC100805093 pathogen-related protein 100805093 GLYMA_06G123700 41.94 FAD2-1B omega-6 fatty acid desaturase 100805777 GLYMA_20G111000 41.74 LOC100806679 uncharacterized LOC100806679 100806679 41.72 LOC100305847 uncharacterized LOC100305847 100305847 GLYMA_13G223700 41.65 HIUHase hydroxyisourate hydrolase 547954 GLYMA_02G018700 41.53 LOC100804524 phototropin-1 100804524 GLYMA_12G074100 41.29 LOC547822 glucan endo-1,3-beta-glucosidase 547822 GLYMA_03G132700 41.15 GY2 glycinin subunit G2 547900 GLYMA_03G163500 41.13 LOC113001936 uncharacterized LOC113001936 113001936 41.11 LOC100811209 kunitz trypsin inhibitor 5 100811209 GLYMA_16G211800 41.10 LOC606297 selenium-binding protein 1 606297 GLYMA_08G108000 40.98 LOC100787186 sucrose-binding protein-like 100787186 GLYMA_10G028300 40.90 LOC100787227 probable glycosyltransferase At3g07620 100787227 GLYMA_20G065300 40.81 LOC100814223 ent-kaurene oxidase 100814223 GLYMA_15G002200 40.76 LOC100814166 uncharacterized LOC100814166 100814166 GLYMA_05G237900 40.69 TPS22 copalyl pyrophosphate synthase 100784193 GLYMA_19G157000 40.48 LOC100800810 geraniol 8-hydroxylase 100800810 GLYMA_20G189600 40.47 GASA31 gibberellin-regulated protein 31 100816593 GLYMA_18G132100 40.45 LOC547892 napin-type 2S albumin 1 precursor 547892 GLYMA_12G213600 40.38 LOC100789420 13S globulin seed storage protein 2 100789420 GLYMA_08G127600 40.28 CHR1 chalcone reductase CHR1 547911 GLYMA_14G005700 40.20 GM2S-1 2S albumin 548076 GLYMA_13G288100 40.14 LOC100788783 seipin-1 100788783 GLYMA_18G242100 40.14 GASA12 gibberellin-regulated protein 12 100305713 GLYMA_08G291900 39.97 LOC100809734 organic cation/carnitine transporter 3 100809734 GLYMA_06G192100 39.95 LOC100301903 oleosin family protein 100301903 GLYMA_04G077600 39.89 LOC100802510 36.4 kDa proline-rich protein 100802510 GLYMA_17G140100 39.85 LOC106794834 sulfite exporter TauE/SafE family protein 3-like 106794834 39.81 LOC100306351 uncharacterized LOC100306351 100306351 GLYMA_11G252800 39.67 LOC100785936 ethylene-response factor C3 100785936 GLYMA_10G007000 39.66 GER8 germin-like protein 100500326 GLYMA_07G038500 39.45 LOC100804565 protochlorophyllide reductase, chloroplastic 100804565 GLYMA_06G247100 39.43 LOC100306228 defensin-like protein 1 100306228 GLYMA_05G198000 39.35 OLEO1 oleosin 1 100818601 GLYMA_20G196600 39.35 LOC102659580 uncharacterized LOC102659580 102659580 GLYMA_04G225300 39.33 MFT phosphatidyl ethanolamine-binding family protein MFT 100306314 GLYMA_05G244100 39.29 LOC112999305 uncharacterized LOC112999305 112999305 39.23 LOC100800627 uncharacterized LOC100800627 100800627 GLYMA_12G053300 39.17 EU4 urease 547716 GLYMA_05G146000 39.14 LOC100791015 phosphoenolpyruvate carboxykinase (ATP) 1 100791015 GLYMA_01G019200 39.04 LOC100790013 LamG domain-containing protein 100790013 GLYMA_10G251700 38.98 LOC100810341 trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 100810341 GLYMA_18G106300 38.92 LOC100781853 aldose 1-epimerase-like 100781853 GLYMA_18G257700 38.87 LOC102670074 uncharacterized LOC102670074 102670074 38.85 LOC102669995 A-kinase anchor protein 17A 102669995 GLYMA_09G136200 38.78 LOC100796009 formate dehydrogenase 1, mitochondrial 100796009 GLYMA_19G009000 38.77 LOC100815836 pectinesterase 100815836 GLYMA_01G240300 38.77 LOC100817068 disease resistance protein LAZ5 100817068 GLYMA_15G160900 38.72 LOC102661181 protein NUCLEAR FUSION DEFECTIVE 4 102661181 GLYMA_16G158200 38.61 EU5 urease SBU-III 106794240 GLYMA_08G102966v4 38.55 LOC100787483 UDP-glycosyltransferase 74G1 100787483 GLYMA_16G158100 38.51 GRF6 growth-regulating factor 100806024 GLYMA_07G038400 38.49 LOC100812722 organic cation/carnitine transporter 3-like 100812722 GLYMA_04G171800v4 38.47 LOC100808934 Myb/SANT-like DNA-binding domain-containing protein 100808934 GLYMA_03G189600 38.42 PRP alpha-amylase inhibitor/lipid transfer/seed storage family protein 100499693 38.30 BG7S-1 basic 7S globulin 547908 GLYMA_03G239700 38.30	Upper 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC100794942 chaperone protein DnaJ 100794942 GLYMA_03G216900 64.58 LOC100789670 ninja-family protein 4 100789670 GLYMA_03G084300 61.90 PM1 late embryogenesis abundant group 4 protein PM1 547828 GLYMA_19G147200 58.77 LOC100807147 glucose and ribitol dehydrogenase homolog 1-like 100807147 GLYMA_10G155300 57.09 LOC100806287 uncharacterized LOC100806287 100806287 GLYMA_19G214500 54.65 LOC100785785 translocator protein homolog 100785785 GLYMA_03G213300 54.15 LOC100808861 uncharacterized LOC100808861 100808861 GLYMA_08G239400 53.28 LOC100809595 ninja-family protein AFP2 100809595 GLYMA_16G090500 53.11 LOC100785172 uncharacterized LOC100785172 100785172 GLYMA_08G003500 52.15 LOC100786618 late embryogenesis abundant protein At3g53040 100786618 GLYMA_10G064400 51.57 LOC100800308 galactinol--sucrose galactosyltransferase 100800308 GLYMA_06G179200 51.40 PM9 late embryogenesis abundant group 4 protein PM9 547921 GLYMA_03G144400 51.04 LOC100789969 O-glucosyltransferase rumi homolog 100789969 GLYMA_09G138300 50.74 LOC100790775 galactinol--sucrose galactosyltransferase 100790775 GLYMA_05G003900 50.68 BCH2 beta-carotene hydroxylase BCH2 100785541 GLYMA_16G179100 48.93 LOC100785087 uncharacterized LOC100785087 100785087 GLYMA_04G179400 48.77 LOC100787482 26.5 kDa heat shock protein, mitochondrial 100787482 GLYMA_08G212000 48.63 PM16 seed maturation protein 548013 GLYMA_17G155000 48.30 GOLS galactinol synthase 548050 GLYMA_10G145300 48.24 LOC100779316 CBL-interacting serine/threonine-protein kinase 10 100779316 GLYMA_02G234800 48.22 LOC100527069 RING/U-box superfamily protein 100527069 GLYMA_11G243400 47.85 LOC100811790 probable E3 ubiquitin-protein ligase XERICO 100811790 GLYMA_18G013800 47.27 LOC547942 allergen Gly m Bd 28K 547942 GLYMA_11G153587v4 46.73 LOC100787622 SNF1-related protein kinase regulatory subunit gamma-like PV42a 100787622 GLYMA_13G365800 45.75 PM30 seed maturation protein PM30 547996 GLYMA_13G363300 45.51 LOC100779847 probable F-box protein At5g04010 100779847 GLYMA_02G191900 45.44 LOC100818397 uncharacterized LOC100818397 100818397 GLYMA_19G027400 45.35 LOC100803161 HSP20-like chaperone protein 100803161 GLYMA_07G043600 44.78 LOC100793638 fatty acid desaturase 4, chloroplastic 100793638 GLYMA_08G314700 44.47 LOC100785636 protein LNK3 100785636 GLYMA_04G133400 44.44 LOC100776452 ninja-family protein AFP3 100776452 GLYMA_01G060300 44.33 LOC121172819 uncharacterized LOC121172819 121172819 44.30 LOC100785689 SNF1-related protein kinase regulatory subunit gamma-like PV42a 100785689 GLYMA_15G007300 44.19 LOC100775603 transcription factor MYB14 100775603 GLYMA_03G163100 43.84 LOC100305868 uncharacterized LOC100305868 100305868 GLYMA_05G199300 43.78 STS stachyose synthase 100815922 GLYMA_19G217700 43.74 LOC100809854 uncharacterized LOC100809854 100809854 GLYMA_20G130300 43.53 LEA5 desiccation protective protein LEA5 547885 GLYMA_17G027400 43.50 LOC100800276 uncharacterized LOC100800276 100800276 GLYMA_12G002000 43.40 LOC100791147 uncharacterized LOC100791147 100791147 GLYMA_06G067900 43.26 LOC547576 glutathione S-transferase GST 5 547576 GLYMA_01G040200 43.19 LOC100797554 UDP-glucuronic acid decarboxylase 2 100797554 GLYMA_17G027300 43.14 LOC100784234 4-coumarate--CoA ligase-like 9 100784234 GLYMA_05G075100 43.02 LOC100778708 uncharacterized LOC100778708 100778708 GLYMA_06G157000 43.01 LOC100794728 oleosin G 100794728 GLYMA_17G122000 42.98 LOC100817119 phytoene synthase 2, chloroplastic 100817119 GLYMA_02G283400 42.98 LOC100783605 probable inositol transporter 2 100783605 GLYMA_09G087200 42.96 LOC100785774 uncharacterized LOC100785774 100785774 GLYMA_03G190100 42.91 LOC100786630 serine--glyoxylate aminotransferase-like 100786630 GLYMA_18G116900 42.73 LOC100817666 UPF0098 protein CPn_0877/CP_0992/CPj0877/CpB0906 100817666 GLYMA_03G052200 42.65 SIP1-6 aquaporin SIP1-6 100797126 GLYMA_06G307000 42.48 LOC100781488 ultraviolet-B receptor UVR8 100781488 GLYMA_18G034600 42.42 LOC100778027 uncharacterized LOC100778027 100778027 GLYMA_14G029700 42.38 PIP1-8 aquaporin PIP1-8 100791447 GLYMA_11G228000 42.38 LOC100808254 ferredoxin-A 100808254 GLYMA_12G1696001 42.08 RCA03 ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic-like 100795298 GLYMA_03G068100 42.00 LOC100808330 ribosomal protein S18 acetylase RimI-like protein 100808330 GLYMA_08G240100 41.93 PM35 seed maturation protein PM35 547556 GLYMA_17G164200 41.59 LOC100782113 protein ECERIFERUM 2 100782113 GLYMA_06G097300 41.53 CYP71D10 cytochrome P450 CYP71D10 606548 GLYMA_15G050300 41.07 LOC113001937 acanthoscurrin-2-like 113001937 40.96 PM12 dehydrin 547495 GLYMA_04G009900 40.86 LOC100778841 ultraviolet-B receptor UVR8 100778841 GLYMA_11G223000 40.41 LOC121174025 uncharacterized LOC121174025 121174025 GLYMA_18G038851v4 40.41 LOC102662292 uncharacterized LOC102662292 102662292 GLYMA_05G045800 40.40 LOC100794949 uncharacterized LOC100794949 100794949 GLYMA_11G104100 40.28 PM34 seed maturation protein PM34 547554 GLYMA_20G233000 40.21 LOC100797103 uncharacterized LOC100797103 100797103 GLYMA_05G195900 40.16 LOC100779390 late embryogenesis abundant protein 100779390 GLYMA_12G235800 40.08 MP2 maturation polypeptide 547827 GLYMA_13G149000 40.02 LOC100800521 protochlorophyllide-dependent translocon component 52, chloroplastic 100800521 GLYMA_08G114400 39.99 LOC100306632 uncharacterized LOC100306632 100306632 GLYMA_15G008300 39.96 LOC100819991 galactinol synthase 1 100819991 GLYMA_19G219100 39.94 RCA11 ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like 100818034 GLYMA_11G221000 39.83 LOC111240470 putative 18.5 kDa class I heat shock protein 111240470 GLYMA_13G176500 39.80 LOC100783299 uncharacterized LOC100783299 100783299 GLYMA_19G114800 39.77 LOC100818522 tryptophan aminotransferase-related protein 2 100818522 GLYMA_17G086500 39.64 LOC100527684 Remorin_C superfamily protein 100527684 GLYMA_19G141100 39.40 CHS13 chalcone synthase 13 100775264 GLYMA_19G105100 39.39 LOC100306228 defensin-like protein 1 100306228 GLYMA_05G198000 39.32 LOC100527137 cyclin-U1-1-like 100527137 GLYMA_13G306600 39.29 LOC100819278 uncharacterized LOC100819278 100819278 GLYMA_11G067900 39.27 LOC100790228 probable purple acid phosphatase 20 100790228 GLYMA_19G194000 39.27 PGMPM10 51 kDa seed maturation protein 732633 GLYMA_13G119400 39.16 LOC100500559 uncharacterized LOC100500559 100500559 GLYMA_04G221700 39.09 PM27 seed maturation protein PM27 547947 GLYMA_12G001600 39.08 LOC100800838 psbP domain-containing protein 4, chloroplastic 100800838 GLYMA_06G122400 39.04 PM3 maturation protein PM3 547799 GLYMA_10G205900 38.98 LOC100802029 UDP-glycosyltransferase 73C1 100802029 GLYMA_03G187000 38.81 PM39 seed maturation protein PM39 547559 GLYMA_09G139600 38.76 LOC100798883 galactinol--sucrose galactosyltransferase 100798883 GLYMA_05G040300 38.70 CP3 cysteine proteinase 547978 GLYMA_10G207100 38.49 LOC100779237 oleosin Ara h 15.0101 100779237 GLYMA_06G078700 38.47 LOC100778232 uncharacterized LOC100778232 100778232 GLYMA_17G234300 38.30 P91 P24 oleosin 548081 GLYMA_16G071800 38.14 LOC100798494 late embryogenesis abundant protein 3 100798494 GLYMA_11G158394v4 37.94 LOC100817318 non-specific lipid-transfer protein 3-like 100817318 GLYMA_03G040400 37.91 LOC100305728 uncharacterized LOC100305728 100305728 GLYMA_14G186400 37.85 LOC100776369 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial 100776369 GLYMA_04G238200 37.85 LOC100816064 aldose reductase 100816064 GLYMA_18G208000 37.79	Upper 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC100810866 uncharacterized LOC100810866 100810866 GLYMA_18G106400 53.75 LOC100815824 protodermal factor 1 100815824 GLYMA_08G309700 50.75 LOC100775351 hydroquinone glucosyltransferase 100775351 GLYMA_07G110300 47.85 LOC100798112 non-specific lipid-transfer protein-like 100798112 GLYMA_18G210900 46.70 LOC100799886 glycine-rich protein 5 100799886 GLYMA_03G170900 45.28 LOC100794709 subtilisin-like protease SBT1.3 100794709 GLYMA_16G201700 44.62 LOC100818020 very-long-chain aldehyde decarbonylase CER1-like 100818020 GLYMA_03G101200v4 44.45 LOC100808745 CASP-like protein 2A2 100808745 GLYMA_18G045300 43.58 LOC100790042 CASP-like protein 10-like 100790042 GLYMA_11G208600 40.28 PGIP polygalacturonase inhibitor protein 548022 GLYMA_08G079100 39.88 LOC100790182 U-box domain-containing protein 21 100790182 GLYMA_02G242900 39.86 LOC100305415 protein kinase-related protein 100305415 GLYMA_11G223200 39.72 LOC100795913 U-box domain-containing protein 20 100795913 GLYMA_14G212200 39.62 LOC100777207 methionine gamma-lyase 100777207 GLYMA_02G087900 39.43 WRKY17 WRKY transcription factor 17 100127373 GLYMA_06G061900 38.78 LOC111605748 uncharacterized LOC111605748 111605748 GLYMA_13G130600 38.77 LOC100500411 putative late embryogenesis abundant 3 family protein 100500411 GLYMA_03G215000 38.34 LOC100778342 serine carboxypeptidase 1 100778342 GLYMA_13G029200 38.15 LOC100815499 homeobox-leucine zipper protein MERISTEM L1 100815499 GLYMA_01G240100 37.90 LOC100811728 3-ketoacyl-CoA synthase 6 100811728 GLYMA_08G261100 37.90 LOC100809075 homeobox-leucine zipper protein HDG11 100809075 GLYMA_09G168000 37.65 LOC100804277 protein ALP1-like 100804277 37.00 LOC100815880 receptor like protein 21 100815880 GLYMA_18G273000 36.79 LOC100782360 uncharacterized LOC100782360 100782360 GLYMA_17G166600 36.53 CHI2-A chalcone--flavonone isomerase 2-A 732546 GLYMA_20G241700 36.33 LOC100816264 serine/threonine-protein kinase-like protein ACR4 100816264 GLYMA_11G127700v4 35.99 LOC102669928 GDSL esterase/lipase At1g71691 102669928 GLYMA_06G324200 35.43 LOC100782866 cytochrome P450 82A2 100782866 GLYMA_15G203500 35.32 LOC100795901 early nodulin-like protein 2-like 100795901 GLYMA_06G239900 35.27 LOC100785598 E3 ubiquitin-protein ligase PUB23 100785598 GLYMA_10G081900 35.27 LOC100810797 BON1-associated protein 2 100810797 GLYMA_07G076600 35.20 LOC100782240 homeobox-leucine zipper protein MERISTEM L1 100782240 GLYMA_11G003400 35.19 LOC100800695 protein EPIDERMAL PATTERNING FACTOR 2-like 100800695 GLYMA_08G168400 35.08 LOC100781016 methionine gamma-lyase 100781016 GLYMA_13G001200 34.90 MYB12A R2R3-type MYB transcription factor MYB12a 547458 GLYMA_03G221700 34.75 LOC100807334 uncharacterized LOC100807334 100807334 GLYMA_03G016400 34.66 LOC100791420 MACPF domain-containing protein CAD1 100791420 GLYMA_18G214700 34.65 LOC100817213 L-type lectin-domain containing receptor kinase IX.1 100817213 GLYMA_07G183900 34.42 LOC100784906 CASP-like protein 1E1 100784906 GLYMA_19G207000 34.38 LOC100777014 probable glycerol-3-phosphate acyltransferase 3 100777014 GLYMA_02G010600 34.31 LOC100775292 glucan endo-1,3-beta-glucosidase 100775292 GLYMA_12G021300 34.27 LOC100793187 NDR1/HIN1-like protein 10 100793187 GLYMA_03G201000 34.01 LOC100785397 chitinase 10 100785397 GLYMA_02G007400 33.92 LOC100783984 uncharacterized LOC100783984 100783984 GLYMA_02G128800 33.85 LOC100807174 LEA domain-containing protein 100807174 GLYMA_19G198700 33.85 LOC100794273 3-ketoacyl-CoA synthase 11 100794273 GLYMA_04G149300 33.57 LOC100526897 C2H2-type zinc finger protein 100526897 GLYMA_03G173300 33.50 LOC121174775 glycine-rich cell wall structural protein 1-like 121174775 GLYMA_04G079100v4 33.46 LOC121172926 uncharacterized LOC121172926 121172926 33.33 LOC100810724 core-2/I-branching enzyme domain-containing protein 100810724 GLYMA_10G272000 33.28 LOC100816078 GDSL esterase/lipase At5g33370 100816078 GLYMA_04G109900 33.27 LOC100809053 epoxide hydrolase 2-like 100809053 GLYMA_16G132500 33.25 LOC100813858 uncharacterized LOC100813858 100813858 GLYMA_14G051800 33.24 LOC100789991 probable acyl-activating enzyme 6 100789991 GLYMA_02G239300 33.23 LOC100793658 homeobox-leucine zipper protein HDG5-like 100793658 GLYMA_01G014600 33.21 LOC100791876 uncharacterized LOC100791876 100791876 GLYMA_14G053500 33.17 LOC100796758 12-oxophytodienoate reductase 3 100796758 GLYMA_13G109800 33.10 LOC100790101 homeobox-leucine zipper protein HDG2 100790101 GLYMA_06G303700 32.95 LOC100802257 protein SAR DEFICIENT 1 100802257 GLYMA_05G237200 32.89 LOC100799550 mitogen-activated protein kinase kinase kinase 20 100799550 GLYMA_11G055100 32.84 LOC100792833 probable WRKY transcription factor 33 100792833 GLYMA_18G208800 32.83 LOC100787891 homeobox-leucine zipper protein MERISTEM L1 100787891 GLYMA_10G251300 32.78 LOC100785023 homeobox-leucine zipper protein HDG11 100785023 GLYMA_16G217800 32.77 MYB184 MYB transcription factor MYB184 778045 GLYMA_08G042100 32.65 AT133 malonyl-CoA:isoflavone 7-O-glucoside-6''-O-malonyltransferase 100127365 GLYMA_19G030500 32.58 LOC100783194 aspartic proteinase Asp1 100783194 GLYMA_06G114200 32.54 LOC100797644 scarecrow-like protein 21 100797644 GLYMA_12G137700 32.43 CYP4 peptidyl-prolyl cis-trans isomerase CYP4 100787030 GLYMA_04G005300 32.38 LOC100305733 uncharacterized LOC100305733 100305733 GLYMA_07G005100 32.33 LOC100792386 anthocyanidin 3-O-glucosyltransferase 5 100792386 GLYMA_06G239500 32.33 LOC100803490 protein TOO MANY MOUTHS 100803490 GLYMA_13G365900 32.32 LOC100787979 protein DMR6-LIKE OXYGENASE 2 100787979 GLYMA_07G048600 32.27 LOC100788420 AAA-ATPase At3g50940 100788420 GLYMA_02G053600 32.25 LOC121174626 GDSL esterase/lipase At5g33370-like 121174626 GLYMA_03G073752v4 32.24 LOC100788994 fatty acyl-CoA reductase 3 100788994 GLYMA_11G185100 32.22 IQD18 protein IQ-DOMAIN 18 100782825 GLYMA_06G052800 32.20 LOC100778922 homeobox-leucine zipper protein HOX17 100778922 GLYMA_15G168800 32.16 LOC100790930 elongation of fatty acids protein 3-like 100790930 GLYMA_04G034400 32.11 LOC100815307 putative PAR1 protein 100815307 GLYMA_01G108700 32.08 LOC100807319 uncharacterized LOC100807319 100807319 GLYMA_10G003600 32.00 LOC100783835 aspartic proteinase PCS1 100783835 GLYMA_11G220300 31.93 LOC102665987 uncharacterized LOC102665987 102665987 GLYMA_03G168500 31.91 LOC102665635 BON1-associated protein 1 102665635 GLYMA_07G076200 31.83 CRK19 cysteine-rich receptor-like protein kinase 102662291 GLYMA_10G253100 31.79 LOC100820113 homeobox-leucine zipper protein ANTHOCYANINLESS 2 100820113 GLYMA_09G143700 31.78 LOC100815926 protein COBRA 100815926 GLYMA_19G033500 31.71 LOC100782027 3-ketoacyl-CoA synthase 11 100782027 GLYMA_10G179400 31.66 LOC100788672 protein ALP1-like 100788672 31.49 LOC100781977 LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1 100781977 GLYMA_08G044300 31.48 LOC100798299 short-chain dehydrogenase reductase 3b 100798299 GLYMA_03G222600 31.48 LOC100791711 GDSL esterase/lipase At1g29670 100791711 GLYMA_15G089300 31.39 LOC100817307 CASP-like protein 1E1 100817307 GLYMA_03G209700 31.30 LOC100793733 non-specific lipid-transfer protein 1 100793733 GLYMA_03G035600 31.27 LOC100789081 uncharacterized acetyltransferase At3g50280 100789081 GLYMA_08G003700 31.22 LOC100804105 class V chitinase 100804105 GLYMA_17G076100 31.03 LOC100499827 uncharacterized LOC100499827 100499827 GLYMA_04G223000 31.00 LOC100793758 homeobox-leucine zipper protein MERISTEM L1 100793758 GLYMA_20G142200 30.92 LOC100779488 caffeoylshikimate esterase 100779488 GLYMA_09G184000 30.89 LOC100785983 3-ketoacyl-CoA synthase 11 100785983 GLYMA_20G210900 30.87 LOC100792012 polyphenol oxidase, chloroplastic 100792012 GLYMA_06G270400 30.83	Upper 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC112999168 28S ribosomal RNA 112999168 60.85 LOC112999154 28S ribosomal RNA 112999154 60.84 LOC121174459 28S ribosomal RNA 121174459 60.83 LOC112999127 28S ribosomal RNA 112999127 60.82 LOC112999172 28S ribosomal RNA 112999172 60.71 LOC112999205 28S ribosomal RNA 112999205 60.69 LOC112999111 28S ribosomal RNA 112999111 60.68 LOC121174432 28S ribosomal RNA 121174432 60.67 LOC112999176 28S ribosomal RNA 112999176 60.65 LOC112999142 28S ribosomal RNA 112999142 60.65 LOC112999145 28S ribosomal RNA 112999145 60.64 LOC121174460 28S ribosomal RNA 121174460 60.64 LOC112999131 28S ribosomal RNA 112999131 60.57 LOC121174428 28S ribosomal RNA 121174428 60.54 LOC112999187 28S ribosomal RNA 112999187 60.52 LOC112999112 28S ribosomal RNA 112999112 60.49 LOC112999155 28S ribosomal RNA 112999155 60.49 LOC112999133 28S ribosomal RNA 112999133 60.47 LOC112999149 28S ribosomal RNA 112999149 60.44 LOC112999110 28S ribosomal RNA 112999110 60.43 LOC121174457 28S ribosomal RNA 121174457 60.40 LOC112999146 28S ribosomal RNA 112999146 60.38 LOC112999165 28S ribosomal RNA 112999165 60.37 LOC112999121 28S ribosomal RNA 112999121 60.36 LOC112999144 28S ribosomal RNA 112999144 60.36 LOC112999135 28S ribosomal RNA 112999135 60.36 LOC112999130 28S ribosomal RNA 112999130 60.35 LOC112999171 28S ribosomal RNA 112999171 60.32 LOC112999224 28S ribosomal RNA 112999224 60.25 LOC112999139 28S ribosomal RNA 112999139 60.25 LOC112999109 28S ribosomal RNA 112999109 60.24 LOC112999140 28S ribosomal RNA 112999140 60.21 LOC121173393 28S ribosomal RNA 121173393 60.21 LOC121174429 28S ribosomal RNA 121174429 60.19 LOC121174433 28S ribosomal RNA 121174433 60.18 LOC112999132 28S ribosomal RNA 112999132 60.18 LOC121174434 28S ribosomal RNA 121174434 60.15 LOC112999141 28S ribosomal RNA 112999141 60.14 LOC112999114 28S ribosomal RNA 112999114 60.11 LOC112999113 28S ribosomal RNA 112999113 60.10 LOC112999162 28S ribosomal RNA 112999162 60.09 LOC112999147 28S ribosomal RNA 112999147 60.09 LOC112999186 28S ribosomal RNA 112999186 60.08 LOC112999151 28S ribosomal RNA 112999151 60.05 LOC112999120 28S ribosomal RNA 112999120 60.03 LOC121174458 28S ribosomal RNA 121174458 59.99 LOC112999106 28S ribosomal RNA 112999106 59.99 LOC121174431 28S ribosomal RNA 121174431 59.98 LOC112999122 28S ribosomal RNA 112999122 59.98 LOC112999103 28S ribosomal RNA 112999103 59.96 LOC121174435 28S ribosomal RNA 121174435 59.92 LOC112999183 28S ribosomal RNA 112999183 59.92 LOC112999138 28S ribosomal RNA 112999138 59.88 LOC112999185 28S ribosomal RNA 112999185 59.86 LOC121174430 28S ribosomal RNA 121174430 59.84 LOC112999134 28S ribosomal RNA 112999134 59.78 LOC112999136 28S ribosomal RNA 112999136 59.75 LOC121173392 28S ribosomal RNA 121173392 59.68 LOC112999152 28S ribosomal RNA 112999152 59.59 LOC112999200 28S ribosomal RNA 112999200 59.55 LOC112999212 28S ribosomal RNA 112999212 59.55 LOC112999129 28S ribosomal RNA 112999129 59.10 LOC121174439 28S ribosomal RNA 121174439 58.70 LOC112999157 28S ribosomal RNA 112999157 58.56 LOC112999173 28S ribosomal RNA 112999173 58.35 LOC112999003 18S ribosomal RNA 112999003 58.26 LOC112998972 18S ribosomal RNA 112998972 58.07 LOC112998986 18S ribosomal RNA 112998986 58.06 LOC112999028 18S ribosomal RNA 112999028 58.03 LOC112999016 18S ribosomal RNA 112999016 58.00 LOC112999009 18S ribosomal RNA 112999009 57.96 LOC121174477 18S ribosomal RNA 121174477 57.93 LOC112999008 18S ribosomal RNA 112999008 57.89 LOC112998995 18S ribosomal RNA 112998995 57.89 LOC121174408 18S ribosomal RNA 121174408 57.86 LOC121174456 18S ribosomal RNA 121174456 57.84 LOC121174411 18S ribosomal RNA 121174411 57.84 LOC112999037 18S ribosomal RNA 112999037 57.84 LOC121173389 18S ribosomal RNA 121173389 57.83 LOC112999020 18S ribosomal RNA 112999020 57.81 LOC112998982 18S ribosomal RNA 112998982 57.78 LOC112999031 18S ribosomal RNA 112999031 57.75 LOC112999036 18S ribosomal RNA 112999036 57.74 LOC121174410 18S ribosomal RNA 121174410 57.74 LOC112999019 18S ribosomal RNA 112999019 57.69 LOC112998973 18S ribosomal RNA 112998973 57.69 LOC112999169 28S ribosomal RNA 112999169 57.69 LOC112999071 18S ribosomal RNA 112999071 57.68 LOC112998985 18S ribosomal RNA 112998985 57.66 LOC121174403 18S ribosomal RNA 121174403 57.65 LOC112999005 18S ribosomal RNA 112999005 57.64 LOC112998970 18S ribosomal RNA 112998970 57.62 LOC112999029 18S ribosomal RNA 112999029 57.61 LOC112998971 18S ribosomal RNA 112998971 57.61 LOC112998988 18S ribosomal RNA 112998988 57.60 LOC112999072 18S ribosomal RNA 112999072 57.59 LOC112998984 18S ribosomal RNA 112998984 57.58 LOC112999033 18S ribosomal RNA 112999033 57.57 LOC112999013 18S ribosomal RNA 112999013 57.55 LOC112998991 18S ribosomal RNA 112998991 57.54	Upper 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC100785183 cationic amino acid transporter 1 100785183 GLYMA_09G118900 35.54 LOC100803630 nicotianamine synthase 100803630 GLYMA_19G228400 35.23 LOC100783602 cytochrome P450 78A5 100783602 GLYMA_01G061100 34.41 LOC100804462 cytochrome P450 78A5 100804462 GLYMA_02G119600 34.36 LOC100794250 nicotianamine synthase-like protein 100794250 GLYMA_03G231200 34.01 LOC100798388 cytochrome P450 78A3 100798388 GLYMA_07G052300 33.13 LOC102663730 uncharacterized LOC102663730 102663730 32.11 LOC100814069 nicotianamine synthase-like protein 100814069 GLYMA_09G036400 32.06 LOC100775900 transcription factor MYB48-like 100775900 GLYMA_15G041100 32.03 LOC100807938 cyanidin 3-O-galactoside 2''-O-xylosyltransferase FGGT1 100807938 GLYMA_13G289100 31.65 LOC100797554 UDP-glucuronic acid decarboxylase 2 100797554 GLYMA_17G027300 30.37 LOC100776613 transcription repressor OFP8-like 100776613 GLYMA_08G038400 30.07 LOC106795191 uncharacterized LOC106795191 106795191 29.74 LOC121174051 uncharacterized LOC121174051 121174051 29.40 LOC102668111 uncharacterized LOC102668111 102668111 GLYMA_18G173300 29.34 MYB149 MYB transcription factor MYB149 778091 GLYMA_08G293300 28.94 ALDH2C1 aldehyde dehydrogenase family 2 member C1 100817721 GLYMA_05G231800 28.66 LOC732571 glyceraldehyde-3-phosphate dehydrogenase B subunit 732571 GLYMA_06G015900 27.98 COL21 CONSTANS-like zinc finger protein 100802113 GLYMA_07G091400 27.91 LOC100791112 putative fasciclin-like arabinogalactan 100791112 GLYMA_12G069400 27.67 LOC100797022 asparagine synthetase-like 100797022 GLYMA_02G228100 27.65 LOC100776705 boron transporter 1 100776705 GLYMA_19G219500 27.65 SODB2 iron-superoxide dismutase 547531 GLYMA_10G193500 27.59 UGT4 isoflavone 7-O-glucosyltransferase UGT4 100776271 GLYMA_16G175400 27.47 LOC100778575 long-chain-alcohol oxidase FAO4A 100778575 GLYMA_16G108900 27.40 LOC100807543 histidine kinase 1 100807543 GLYMA_11G078300 27.36 LOC100800060 hydroquinone glucosyltransferase 100800060 GLYMA_03G116200 27.18 LOC121173609 uncharacterized LOC121173609 121173609 27.01 PHO1-H4 PHO1 family protein 100781658 GLYMA_10G004800 26.92 LOC100783000 uncharacterized LOC100783000 100783000 GLYMA_06G143700 26.76 AS2 asparagine synthetase 2 547894 GLYMA_14G195000 26.66 LOC100784335 uncharacterized LOC100784335 100784335 GLYMA_18G078200 26.58 LOC112998744 G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 112998744 GLYMA_13G283000 26.49 LOC100788090 sedoheptulose-1,7-bisphosphatase, chloroplastic 100788090 GLYMA_11G226900 26.44 LOC100807448 cytochrome P450 84A1 100807448 GLYMA_16G131200 26.25 LOC100785036 SNF2 domain-containing protein CLASSY 2 100785036 GLYMA_02G261800 26.24 LOC100784113 aspartyl protease family protein 100784113 GLYMA_16G122700 26.12 RCABETA ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like 100797222 GLYMA_18G036400 26.03 SMEP1 metalloproteinase 547880 GLYMA_02G215700 26.01 LOC100781528 xyloglucan endotransglucosylase/hydrolase protein 31 100781528 GLYMA_12G080100 26.00 LOC100802706 hemerythrin/HHE Fe-binding domain-containing E3 ligase-like 100802706 GLYMA_17G096900 26.00 LOC100815292 cytochrome P450 78A3-like 100815292 GLYMA_16G021200 25.92 LOC100803423 UDP-glycosyltransferase 74G1 100803423 GLYMA_18G247000 25.91 NF-YA05 nuclear transcription factor Y subunit A-5 100500765 GLYMA_07G036200 25.64 LOC100817776 protein JINGUBANG 100817776 GLYMA_08G130300 25.60 LOC102667854 receptor-like protein 56 102667854 GLYMA_12G233700 25.53 LOC100799906 cytochrome P450 78A3 100799906 GLYMA_19G258700 25.48 LOC100784802 uncharacterized LOC100784802 100784802 GLYMA_07G030500 25.45 LOC100798645 protein NETWORKED 4B 100798645 GLYMA_10G021600 25.37 LOC100793315 fasciclin-like arabinogalactan protein 12 100793315 GLYMA_08G119500 25.33 LOC102669208 membrane-associated kinase regulator 5 102669208 GLYMA_10G229700 25.25 LOC100778431 uncharacterized LOC100778431 100778431 GLYMA_09G263500 25.23 LOC100816187 probable serine/threonine-protein kinase WNK5 100816187 GLYMA_01G132000 25.16 LOC100819956 root phototropism protein 3 100819956 GLYMA_10G155600 25.09 LOC100500658 zf-FCS-like C2-C2 zinc finger domain-containing protein 100500658 GLYMA_11G238700 25.01 LOC100813611 BTB/POZ and TAZ domain-containing protein 1 100813611 GLYMA_04G190900 25.01 LOC100776849 uncharacterized LOC100776849 100776849 GLYMA_02G285100 24.73 LOC100786323 uncharacterized protein C24B11.05 100786323 GLYMA_19G222500 24.66 LOC100786209 transcription factor bHLH18 100786209 GLYMA_07G116700 24.58 SODB Fe-superoxide dismutase 547823 GLYMA_20G196900 24.48 LOC100813362 alpha/beta hydrolase domain-containing protein 17B 100813362 GLYMA_09G208000 24.28 LOC100813635 protein SPA1-RELATED 3 100813635 GLYMA_12G155700 24.26 LOC100817152 probable 2-oxoglutarate-dependent dioxygenase AOP1 100817152 GLYMA_19G133300 24.22 LOC100777050 WAT1-related protein At2g37460 100777050 GLYMA_19G173800 24.19 LOC100810379 BEL1-like homeodomain protein 8 100810379 GLYMA_11G196300 24.17 LOC100812537 uncharacterized LOC100812537 100812537 GLYMA_04G251000 24.02 LOC100500559 uncharacterized LOC100500559 100500559 GLYMA_04G221700 24.02 LOC100784861 potassium transporter 6 100784861 GLYMA_18G136500 24.01 LOC100805420 transcription factor bHLH94 100805420 GLYMA_04G098400 23.96 RCA11 ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like 100818034 GLYMA_11G221000 23.93 LOC100783849 probable carboxylesterase 15 100783849 GLYMA_19G202900 23.90 LOC100500593 uncharacterized LOC100500593 100500593 GLYMA_15G161100 23.83 LOC100818765 lipase-like PAD4 100818765 GLYMA_04G209700 23.80 INR2 inducible nitrate reductase 2 732634 GLYMA_06G109200 23.79 PHO1-H1 phosphate transporter PHO1-like 100796500 GLYMA_02G003700 23.70 LOC100813789 protein NRT1/ PTR FAMILY 6.3 100813789 GLYMA_11G031500 23.67 LOC100500404 uncharacterized LOC100500404 100500404 23.63 LOC100816273 O-acyltransferase WSD1 100816273 GLYMA_12G114900 23.62 LOC106794180 cytochrome P450 93A3 106794180 GLYMA_19G144600 23.60 LOC100797490 molybdate transporter 1 100797490 GLYMA_06G074100 23.51 LOC100810585 type IV inositol polyphosphate 5-phosphatase 6 100810585 GLYMA_20G148600 23.49 TGA02 bZIP transcription factor 2 100797393 GLYMA_02G097900 23.48 ALDH2C5 aldehyde dehydrogenase family 2 member C5 100811540 GLYMA_08G039200 23.40 LOC100811451 uncharacterized LOC100811451 100811451 GLYMA_19G003100 23.38 LOC100800012 phosphoglycerate mutase-like protein AT74H 100800012 GLYMA_01G221400 23.37 LOC100820245 probable serine/threonine-protein kinase PBL7 100820245 GLYMA_14G216100 23.36 LOC100798226 uncharacterized LOC100798226 100798226 GLYMA_08G022000 23.31 LOC100793076 UDP-glycosyltransferase 83A1 100793076 GLYMA_13G056800 23.30 LOC100779279 MADS-box transcription factor 6-like 100779279 GLYMA_16G200700 23.23 LOC100800461 polyol transporter 5 100800461 GLYMA_12G044700 23.23 LOC100500225 nucleobase-cation symporter1 family protein 100500225 GLYMA_10G063100 23.19 LOC100790085 protein FAF-like, chloroplastic 100790085 GLYMA_13G312500 23.09 LOC100800452 sodium/calcium exchanger NCL2 100800452 GLYMA_12G227800 22.99 LOC100778641 glycosyltransferase family 92 protein RCOM_0530710 100778641 GLYMA_18G130100 22.94 LOC100804994 ferric reduction oxidase 7, chloroplastic 100804994 GLYMA_09G018600 22.92 LOC100798371 uncharacterized LOC100798371 100798371 GLYMA_06G121000 22.91 LOC100807468 protein PLASTID MOVEMENT IMPAIRED 1 100807468 GLYMA_16G206400 22.89 LOC100798395 acyl-protein thioesterase 2 100798395 GLYMA_15G010800 22.80 XET1 xyloglucan endotransglycosylase 732603 GLYMA_15G169100 22.77 LOC100785443 protein PLASTID MOVEMENT IMPAIRED 2 100785443 GLYMA_19G001900 22.74	Upper 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC100808862 cytochrome P450 71D11 100808862 GLYMA_08G327100 39.28 LOC100777820 root phototropism protein 3-like 100777820 GLYMA_13G362200 32.35 LOC100815555 B3 domain-containing transcription factor VRN1-like 100815555 GLYMA_11G124200 31.29 GY3 glycinin G3 547463 GLYMA_19G1649001 30.65 LOC100788550 laccase-15-like 100788550 GLYMA_16G158400 29.78 SWEET24 sugar efflux transporter SWEET24 100800347 GLYMA_08G183500 29.11 IFR1 isoflavone reductase homolog 1 547571 GLYMA_11G070300 28.34 LOC100793908 2-methylene-furan-3-one reductase 100793908 GLYMA_19G008700 27.74 LOC100791555 cytochrome P450 86B1 100791555 GLYMA_09G282700 27.55 LOC100784578 NAC transcription factor 56 100784578 GLYMA_12G221400 27.44 LOC100792641 WAT1-related protein At5g40210 100792641 GLYMA_02G032500 27.08 LOC100811184 boron transporter 4 100811184 GLYMA_15G011200 26.84 LOC100804205 glucose-6-phosphate/phosphate translocator 2, chloroplastic 100804205 GLYMA_13G206700 26.58 LOC100816842 aldehyde oxidase GLOX 100816842 GLYMA_06G026300 26.42 AGL11 MADS domain transporter AGL11 100301905 GLYMA_06G324400 26.34 GASA9 gibberellin-regulated protein 9 100306110 GLYMA_06G044400 26.24 LOC100783801 putative expansin-A17 100783801 GLYMA_10G140200 26.15 LOC102663817 2-oxoglutarate-dependent dioxygenase DAO-like 102663817 GLYMA_11G089200 26.06 LOC100794343 ferric reduction oxidase 7, chloroplastic 100794343 GLYMA_15G124700 26.00 KTI1 Kunitz-type trypsin inhibitor KTI1 100305855 GLYMA_01G095000 25.81 LOC100775490 alcohol dehydrogenase 1-like 100775490 GLYMA_13G035200 25.63 LOC100790880 hypersensitive-induced response protein 1 100790880 GLYMA_02G020900 25.38 SSTP-1 subtilisin-type protease precursor 547552 GLYMA_06G022600 25.35 LOC100788504 uncharacterized LOC100788504 100788504 GLYMA_13G139300 25.24 LOC100807262 SNF2 domain-containing protein CLASSY 3 100807262 GLYMA_08G339900 25.23 LOC100782226 uncharacterized LOC100782226 100782226 GLYMA_10G051900 25.02 LOC100787412 boron transporter 4 100787412 GLYMA_04G069500 24.70 GASA27 gibberellin-regulated protein 27 100305602 GLYMA_17G237100 24.68 LOC100804994 ferric reduction oxidase 7, chloroplastic 100804994 GLYMA_09G018600 24.67 LOC100780079 U-box domain-containing protein 33 100780079 GLYMA_03G008800 24.59 LOC100783793 uncharacterized LOC100783793 100783793 GLYMA_09G010500 24.34 LOC100790650 floral homeotic protein AGAMOUS 100790650 GLYMA_15G088600 24.04 LOC100808977 alpha-L-fucosidase 2 100808977 GLYMA_20G130400 23.99 LOC100815926 protein COBRA 100815926 GLYMA_19G033500 23.95 LOC732595 MADS-box protein 732595 GLYMA_13G223300 23.91 LOC100816135 ABC transporter G family member 9 100816135 GLYMA_13G279800 23.89 LOC100791357 N6-mAMP deaminase 100791357 GLYMA_15G106200 23.88 LOC100783916 sugar transport protein 5 100783916 GLYMA_14G172600 23.87 NLP NAC domain-containing protein 100775809 GLYMA_04G167200 23.80 LOC100810617 GDSL esterase/lipase EXL3 100810617 GLYMA_06G294900 23.77 GASA22 gibberellin-regulated protein 22 100500113 GLYMA_14G087200 23.62 GY1 glycinin G1 547901 23.59 LOC100814642 ferric reduction oxidase 2 100814642 GLYMA_18G235900 23.52 SWEET39 sugar efflux transporter SWEET39 100810290 GLYMA_15G049200 23.47 LOC606297 selenium-binding protein 1 606297 GLYMA_08G108000 23.46 SWEET13 sugar efflux transporter SWEET13 100800304 GLYMA_06G122200 23.46 LOC100801388 probable glycerol-3-phosphate acyltransferase 2 100801388 GLYMA_13G085700 23.44 LOC100776083 protein DETOXIFICATION 16 100776083 GLYMA_08G050700 23.42 LOC100801585 alpha-galactosidase 2 100801585 GLYMA_14G049900 23.35 GY2 glycinin subunit G2 547900 GLYMA_03G163500 23.30 LOC100775619 protein DETOXIFICATION 21 100775619 GLYMA_19G120200 23.18 LOC100792133 2-oxoglutarate-dependent dioxygenase DAO 100792133 GLYMA_11G089300 23.14 LOC100803190 beta-glucosidase 11 100803190 GLYMA_16G097200 23.12 LOC100812576 FCS-Like Zinc finger 10 100812576 GLYMA_06G074400 23.09 HSF-08 heat stress transcription factor 8 100794605 GLYMA_04G052000 23.06 LOC100781958 beta-glucosidase 11 100781958 GLYMA_07G151900 23.04 LOC100784392 probable aminotransferase TAT2 100784392 GLYMA_12G161500 23.00 LOC100801246 protein SPIRAL1-like 5 100801246 GLYMA_08G017200 22.93 LOC100778357 UDP-arabinopyranose mutase 1 100778357 GLYMA_13G053000 22.82 LOC100815550 probable linoleate 9S-lipoxygenase 5 100815550 GLYMA_03G237300 22.71 P34 P34 probable thiol protease 548062 GLYMA_08G116300 22.69 LOC100797153 LRR receptor-like serine/threonine-protein kinase GSO1 100797153 GLYMA_15G155600 22.69 ANN14 annexin A7-like 100808121 GLYMA_13G191200 22.61 FAD2-1A omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 547814 GLYMA_10G278000 22.55 LOC100808734 agamous-like MADS-box protein MADS1 100808734 GLYMA_18G105800 22.53 LOC100780890 NAC domain-containing protein 69 100780890 GLYMA_16G016700 22.50 LOC100775897 dnaJ protein homolog 1 100775897 GLYMA_15G077700 22.49 SCB1 seed coat BURP domain protein 1 548039 GLYMA_07G176700 22.45 GY4 glycinin G4 100101841 GLYMA_10G037100 22.41 LOC100776561 PLASMODESMATA CALLOSE-BINDING PROTEIN 3 100776561 GLYMA_20G025800 22.36 SACPD-C stearoyl-ACP desaturase 100037478 GLYMA_14G121400 22.31 LOC100814890 TPT domain-containing protein 100814890 GLYMA_05G185700 22.23 LOC547658 alcohol dehydrogenase 1 547658 GLYMA_14G156400 22.21 LOC106794094 beta-conglycinin, alpha chain-like 106794094 22.20 LOC100780763 ethylene-responsive transcription factor RAP2-2-like 100780763 GLYMA_10G016500 22.15 LOC102660523 uncharacterized LOC102660523 102660523 GLYMA_17G089500 22.14 LOC100801504 uncharacterized LOC100801504 100801504 GLYMA_11G022100 22.12 LOC100527660 uncharacterized LOC100527660 100527660 GLYMA_02G137400 22.12 LOC100814820 putative germin-like protein 9-2 100814820 GLYMA_02G044500 22.00 LOC100781585 protein C2-DOMAIN ABA-RELATED 7 100781585 GLYMA_07G219900 21.99 LOC100818460 esterase 100818460 GLYMA_14G150100 21.94 LOC100790363 GDSL esterase/lipase At5g03610 100790363 GLYMA_10G203400 21.92 LOC100803737 probable indole-3-acetic acid-amido synthetase GH3.1 100803737 GLYMA_01G190600 21.91 LOC100816066 U-box domain-containing protein 7 100816066 GLYMA_02G139800 21.83 CRK7 cysteine-rich receptor-like protein kinase 100802190 GLYMA_02G037200 21.81 LOC102662113 uncharacterized LOC102662113 102662113 21.76 LOC100813286 selenium-binding protein 2 100813286 GLYMA_05G151300 21.75 LOC100781239 auxin efflux carrier component 100781239 GLYMA_15G208600 21.73 LOC100820538 cyanidin 3-O-galactoside 2''-O-xylosyltransferase FGGT1 100820538 GLYMA_12G132500 21.66 LOC100818288 probable fucosyltransferase 7 100818288 GLYMA_08G219500 21.63 LOC100820262 probable stress-associated endoplasmic reticulum protein 100820262 GLYMA_15G116900 21.50 LOC100799247 KDEL-tailed cysteine endopeptidase CEP1-like 100799247 GLYMA_06G275300 21.47 ACS 1-aminocyclopropane-1-carboxylate synthase 100037458 GLYMA_08G018000 21.40 PHT1-10 inorganic phosphate transporter 1-10 100792711 GLYMA_20G204100 21.40 LOC100798138 ABC transporter A family member 2 100798138 GLYMA_04G173000 21.37 LOC100776166 probable 2-isopropylmalate synthase 100776166 GLYMA_19G120400 21.22 ACS1 1-aminocyclopropane 1-carboxylate synthase 547976 GLYMA_05G211700 21.18 LOC100785089 agamous-like MADS-box protein AGL11 100785089 GLYMA_04G257100 21.16 LOC100794429 agamous-like MADS-box protein MADS4 100794429 GLYMA_11G252300 21.12 LOC100795239 eugenol synthase 1 100795239 GLYMA_01G172800 21.10
Lower 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC547892 napin-type 2S albumin 1 precursor 547892 GLYMA_12G213600 -24.10 LOC547496 metallothionein-II protein 547496 GLYMA_18G157800 -23.59 SLE2 Protein SLE2 547493 GLYMA_03G056000 -22.93 LOC100797632 aquaporin TIP3-4 100797632 GLYMA_20G216100 -21.48 KTI1 Kunitz-type trypsin inhibitor KTI1 100305855 GLYMA_01G095000 -20.02 LOC100797850 dehydration-responsive element-binding protein 2D 100797850 GLYMA_06G028300 -18.45 GY4 glycinin G4 100101841 GLYMA_10G037100 -18.32 LOC100500475 HSP20-like chaperones superfamily protein 100500475 GLYMA_14G063700 -18.16 LOC100807147 glucose and ribitol dehydrogenase homolog 1-like 100807147 GLYMA_10G155300 -17.88 BG7S-2 basic 7S globulin 2 547485 GLYMA_19G236600 -17.48 LOC100817450 aquaporin TIP3-1 100817450 GLYMA_09G160500 -17.19 LOC100808941 uncharacterized LOC100808941 100808941 GLYMA_19G190400 -16.47 LOC100305868 uncharacterized LOC100305868 100305868 GLYMA_05G199300 -16.25 LOC100788468 uncharacterized LOC100788468 100788468 GLYMA_04G018700 -15.98 GY5 glycinin gy5 547452 GLYMA_13G123500 -15.96 LOC121172819 uncharacterized LOC121172819 121172819 -15.86 LOC100782087 membrane protein PM19L 100782087 GLYMA_20G184600 -15.77 LOC100791164 Bowman-Birk type proteinase inhibitor C-II 100791164 GLYMA_14G117600 -15.65 LOC100783335 uncharacterized LOC100783335 100783335 GLYMA_05G194800 -15.38 GY2 glycinin subunit G2 547900 GLYMA_03G163500 -15.11 LOC100789191 oleosin Ara h 14.0103 100789191 GLYMA_05G004300 -15.03 LOC547818 protease inhibitor C-II 547818 GLYMA_09G158600 -15.01 LOC100820626 uncharacterized LOC100820626 100820626 GLYMA_08G224100 -14.87 LOC100808638 uncharacterized LOC100808638 100808638 GLYMA_05G103100 -14.78 LOC100306653 uncharacterized LOC100306653 100306653 GLYMA_13G170900 -14.17 LOC100785774 uncharacterized LOC100785774 100785774 GLYMA_03G190100 -14.02 LOC100794783 oleosin Ara h 14.0103 100794783 GLYMA_19G004800 -13.80 LOC100814794 Bowman-Birk type proteinase inhibitor C-II 100814794 GLYMA_09G158700 -13.79 PM22 seed maturation protein PM22 547533 GLYMA_16G031300 -13.78 LOC100804300 universal stress protein A-like protein 100804300 GLYMA_02G167700 -13.42 LOC100819278 uncharacterized LOC100819278 100819278 GLYMA_11G067900 -13.42 LOC100781398 glycine-rich RNA-binding, abscisic acid-inducible protein 100781398 GLYMA_07G176000 -13.40 LOC100808144 outer envelope pore protein 16-2, chloroplastic 100808144 GLYMA_07G241400 -13.22 BBI-CII Bowman-Birk type proteinase inhibitor C-II 100305895 GLYMA_09G158800 -13.01 PGMPM18 35 kDa seed maturation protein 547500 GLYMA_03G189200 -13.01 LOC100778708 uncharacterized LOC100778708 100778708 GLYMA_06G157000 -12.98 LOC100788239 uncharacterized LOC100788239 100788239 -12.97 GM2S-1 2S albumin 548076 GLYMA_13G288100 -12.92 LOC547942 allergen Gly m Bd 28K 547942 GLYMA_11G153587v4 -12.84 LOC100790057 dehydration-responsive element-binding protein 2D 100790057 GLYMA_04G028100 -12.74 LOC100305553 Bowman-Birk type proteinase inhibitor 100305553 GLYMA_09G158500 -12.48 PM1 late embryogenesis abundant group 4 protein PM1 547828 GLYMA_19G147200 -12.28 PM25 seed maturation protein PM25 547535 GLYMA_20G147600 -12.18 LOC100814662 uncharacterized LOC100814662 100814662 GLYMA_19G213000 -11.68 OLEO1 oleosin 1 100818601 GLYMA_20G196600 -11.57 D-II Bowman-Birk proteinase isoinhibitor D-II 100037464 GLYMA_16G208900 -11.36 LOC100800255 histone H2B 100800255 GLYMA_11G191600 -11.28 LOC100787615 late embryogenesis abundant protein 100787615 GLYMA_13G201300 -11.23 LOC100500067 Bowman-Birk type proteinase inhibitor 100500067 GLYMA_14G117700 -11.16 LOC100816064 aldose reductase 100816064 GLYMA_18G208000 -11.15 PM28 seed maturation protein PM28 547536 GLYMA_08G172800 -10.79 LOC100790797 uncharacterized LOC100790797 100790797 GLYMA_13G202600 -10.78 LOC102669860 probable H/ACA ribonucleoprotein complex subunit 1 102669860 GLYMA_20G011400 -10.77 LOC100814469 aquaporin TIP3-3 100814469 GLYMA_10G174400 -10.73 BBI Bowman-Birk proteinase inhibitor 548083 GLYMA_09G158900 -10.70 GY1 glycinin G1 547901 -10.65 BG7S-1 basic 7S globulin 547908 GLYMA_03G239700 -10.48 LOC100775888 glycine-rich cell wall structural protein 100775888 GLYMA_14G052900 -10.48 LOC100787428 protein NRT1/ PTR FAMILY 1.2 100787428 GLYMA_05G229700 -10.45 LOC100808861 uncharacterized LOC100808861 100808861 GLYMA_08G239400 -10.31 LOC100815133 salt stress-induced hydrophobic peptide ESI3 100815133 GLYMA_17G183800 -10.25 SLE3 protein SLE3 100500126 GLYMA_01G119600 -10.23 LOC100781585 protein C2-DOMAIN ABA-RELATED 7 100781585 GLYMA_07G219900 -10.17 SCHI chilling-induced protein 100170740 GLYMA_13G275000 -9.95 LOC106798342 uncharacterized LOC106798342 106798342 GLYMA_03G234500 -9.87 LOC100820616 1-Cys peroxiredoxin 100820616 GLYMA_08G088000 -9.80 LOC100786873 histone H2B.3 100786873 GLYMA_12G082700 -9.74 PM31 seed maturation protein PM31 547537 GLYMA_02G076600 -9.48 LOC100775278 uncharacterized LOC100775278 100775278 GLYMA_04G238050v4 -9.17 LOC100785689 SNF1-related protein kinase regulatory subunit gamma-like PV42a 100785689 GLYMA_15G007300 -9.12 LOC100786259 vesicle transport v-SNARE 11 100786259 GLYMA_09G234700 -9.04 LOC100786618 late embryogenesis abundant protein At3g53040 100786618 GLYMA_10G064400 -9.03 LOC100779390 late embryogenesis abundant protein 100779390 GLYMA_12G235800 -8.95 LOC100500307 18.2 kDa class I heat shock protein 100500307 GLYMA_02G252800 -8.91 LOC100794942 chaperone protein DnaJ 100794942 GLYMA_03G216900 -8.80 LOC100810219 uncharacterized LOC100810219 100810219 GLYMA_11G218400 -8.69 A1 albumin 1 547776 GLYMA_13G194400 -8.65 PM13 Ca+2-binding EF hand protein 547497 GLYMA_10G189900 -8.63 LOC100790246 glycine-rich protein 100790246 GLYMA_20G011500 -8.59 LOC732637 Lea protein 732637 GLYMA_17G040800 -8.46 LOC100783299 uncharacterized LOC100783299 100783299 GLYMA_19G114800 -8.41 LOC100815970 albumin-1 100815970 GLYMA_13G194300 -8.39 LOC100775792 cysteine proteinase inhibitor 4 100775792 GLYMA_18G003700 -8.17 LOC100306228 defensin-like protein 1 100306228 GLYMA_05G198000 -8.10 LOC100301903 oleosin family protein 100301903 GLYMA_04G077600 -8.06 P34 P34 probable thiol protease 548062 GLYMA_08G116300 -8.02 100805863 aquaporin TIP3-2 100805863 GLYMA_16G210000 -7.93 PM29 seed maturation protein 548096 GLYMA_05G112000 -7.85 CG-3 beta-conglycinin alpha-subunit 547464 -7.74 SBP65 LEA protein 547879 GLYMA_13G291800 -7.68 PGMPM10 51 kDa seed maturation protein 732633 GLYMA_13G119400 -7.63 PM30 seed maturation protein PM30 547996 GLYMA_13G363300 -7.55 PM12 dehydrin 547495 GLYMA_04G009900 -7.41 LOC100779239 defensin-like protein 100779239 GLYMA_13G278000 -7.33 LOC100788249 small heat shock protein, chloroplastic 100788249 GLYMA_18G094600 -7.30 LOC100527912 HSP20-like chaperone protein 100527912 GLYMA_08G068700 -7.29 LOC102663870 vicilin-like seed storage protein At2g18540 102663870 GLYMA_12G122266v4 -7.26 LOC100785986 major prion protein 100785986 GLYMA_20G011300 -7.22 LOC100810741 probable pectinesterase/pectinesterase inhibitor 36 100810741 GLYMA_19G078400 -7.03 LOC106794094 beta-conglycinin, alpha chain-like 106794094 -6.98	Lower 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC100775571 uncharacterized LOC100775571 100775571 GLYMA_17G245100 -69.29 LOC100781094 pathogen-associated molecular patterns-induced protein A70 100781094 GLYMA_09G063300 -66.62 LOC100781700 uncharacterized LOC100781700 100781700 GLYMA_11G242100 -65.77 CYP93A1 3,9-dihydroxypterocarpan 6A-monooxygenase 100776878 GLYMA_03G143700 -65.39 OLPa osmotin-like protein, acidic 100037479 GLYMA_11G025600 -65.18 LOC547454 Chitinase III-A 547454 GLYMA_09G126200 -64.97 LOC100306097 CASP-like protein 8 100306097 GLYMA_17G023000 -63.88 KTI-1 kunitz trypsin inhibitor 547933 GLYMA_08G341400 -62.71 LOC100500599 kunitz-type trypsin inhibitor KTI1-like 100500599 GLYMA_08G341300 -62.57 LOC100499938 BSP domain-containing protein 100499938 GLYMA_20G130000 -62.57 LOC100795913 U-box domain-containing protein 20 100795913 GLYMA_14G212200 -62.51 LOC100795679 uncharacterized acetyltransferase At3g50280 100795679 GLYMA_04G040400 -61.80 BBI-1 putative Bowman-Birk type protease inhibitor 100170691 GLYMA_18G231500 -61.55 LOC100802020 putative glutamine amidotransferase GAT1_2.1 100802020 GLYMA_18G294300 -61.13 LOC100785991 uncharacterized LOC100785991 100785991 GLYMA_05G126900 -60.96 LOC100778963 expansin-like B1 100778963 GLYMA_17G147500 -60.69 LOC100777915 ethylene-responsive transcription factor ERF110 100777915 GLYMA_10G223200 -60.65 PTS-L4 pterocarpan synthase-like 100500048 GLYMA_03G147900 -60.10 ALDH3H2 aldehyde dehydrogenase family 3 member H2 100783726 GLYMA_06G114300 -59.93 LOC112577497 potato inhibitor I-like 112577497 GLYMA_10G184600 -59.60 LOC100795412 peroxidase 12-like 100795412 GLYMA_16G164400 -59.52 GLYI-24 putative lactoylglutathione lyase 100818691 GLYMA_17G115900 -59.35 LOC100306379 TRX domain-containing protein 100306379 GLYMA_06G266700 -58.95 LOC100811277 peroxidase 21 100811277 GLYMA_10G050800 -58.91 LOC100807652 UDP-glycosyltransferase 88A1 100807652 GLYMA_09G128400 -58.41 LOC100778547 E3 ubiquitin-protein ligase PUB23-like 100778547 GLYMA_13G312800 -58.30 LOC100817436 ethylene-responsive transcription factor ABR1 100817436 GLYMA_16G164800 -58.15 LOC100780605 cytochrome P450 71D8 100780605 GLYMA_11G062600 -58.11 PR-10 stress-induced protein SAM22 547915 -58.06 PTS1 pterocarpan synthase 100500621 GLYMA_03G147700 -58.03 LOC100779492 isoliquiritigenin 2'-O-methyltransferase-like 100779492 GLYMA_09G281900 -57.81 LOC100777663 class V chitinase 100777663 GLYMA_15G206800 -57.63 G4DT Glycinol 4-dimethylallyltransferase 100301896 GLYMA_10G295300 -57.60 LOC100793054 probable disease resistance protein At5g66900 100793054 GLYMA_05G082400 -57.53 LOC100815629 uncharacterized LOC100815629 100815629 GLYMA_15G131300 -57.48 LOC100101844 PR10-like protein 100101844 -57.45 LOC100775372 MLO-like protein 12 100775372 GLYMA_16G145600 -57.32 MYB92 MYB transcription factor MYB92 100101857 GLYMA_16G023000 -57.19 LOC100785485 peroxidase 21 100785485 GLYMA_13G138300 -56.91 CHIA1 chitinase class I 547572 GLYMA_02G042500 -56.82 LOC100306165 kunitz trypsin inhibitor family protein 100306165 GLYMA_08G235400 -56.80 LOC100802242 ethylene-responsive transcription factor ERF110 100802242 GLYMA_20G168500 -56.75 LOC100790182 U-box domain-containing protein 21 100790182 GLYMA_02G242900 -56.74 LOC100527731 uncharacterized LOC100527731 100527731 GLYMA_07G243600 -56.67 LOC100815836 pectinesterase 100815836 GLYMA_01G240300 -56.37 LOC100804843 ethylene-responsive transcription factor ABR1 100804843 GLYMA_02G080200 -56.34 LOC100776077 uncharacterized LOC100776077 100776077 GLYMA_15G268200 -56.33 LOC100785193 protein PSK SIMULATOR 2 100785193 GLYMA_17G258400 -56.29 LOC100500648 kunitz family trypsin inhibitor 100500648 GLYMA_09G163700 -56.28 GSTU42 glutathione S-transferase GST 15 547584 GLYMA_10G192900 -56.23 WRKY62 WRKY transcription factor 62 100127397 GLYMA_18G056600 -56.08 LOC100793347 syntaxin-121 100793347 GLYMA_10G082500 -56.07 LOC100777773 cyanogenic beta-glucosidase 100777773 GLYMA_11G129900 -55.97 LOC100500076 lysine histidine transporter-like 8 100500076 GLYMA_01G161100 -55.70 GOLS galactinol synthase 548050 GLYMA_10G145300 -55.62 LOC100785791 protein PIN-LIKES 7 100785791 GLYMA_11G087300 -55.52 LOC100795302 NDR1/HIN1-like protein 10 100795302 GLYMA_03G201500 -55.49 LOC100803171 polyphenol oxidase A1, chloroplastic 100803171 GLYMA_15G071200 -55.30 LOC100812336 laccase-7 100812336 GLYMA_03G073778v4 -55.14 LOC100819119 lysine histidine transporter 1 100819119 GLYMA_19G083900 -54.96 LOC100786721 G-type lectin S-receptor-like serine/threonine-protein kinase B120 100786721 GLYMA_07G188800 -54.96 HSF-36 heat stress transcription factor 36 100786140 GLYMA_19G137800 -54.77 LOC100791036 stress-induced protein SAM22-like 100791036 GLYMA_17G030300 -54.74 LOC100816697 UDP-glycosyltransferase 83A1 100816697 GLYMA_08G244800 -54.65 LOC100781617 cytochrome P450 71AU50 100781617 GLYMA_08G140600 -54.62 LOC100802410 uncharacterized LOC100802410 100802410 -54.51 LOC100805360 WRKY transcription factor 72A 100805360 GLYMA_17G097900 -54.44 LOC100780924 uncharacterized protein At5g23160 100780924 GLYMA_09G282600 -54.17 LOC100808718 syntaxin-121-like 100808718 GLYMA_02G195300 -54.11 LOC100306593 uncharacterized LOC100306593 100306593 GLYMA_18G293600 -54.09 LOC100526891 uncharacterized LOC100526891 100526891 GLYMA_12G049300 -54.07 LOC100527215 glu S.griseus protease inhibitor 100527215 GLYMA_20G205800 -54.02 LOC100814345 MDIS1-interacting receptor like kinase 2 100814345 GLYMA_12G007300 -54.00 IDL2A IDA-like protein 113664110 GLYMA_01G090400v4 -53.94 LOC100306553 signaling peptide TAXIMIN 1 100306553 GLYMA_13G231900 -53.92 LOC100527097 uncharacterized LOC100527097 100527097 GLYMA_17G030400 -53.91 LOC100778568 berberine bridge enzyme-like 8 100778568 GLYMA_15G134300 -53.88 LOC100799731 cyanogenic beta-glucosidase 100799731 GLYMA_12G054200 -53.80 IMAT1 isoflavone malonyltransferase IMaT1 100814826 GLYMA_18G268200 -53.76 LOC100813287 uncharacterized LOC100813287 100813287 GLYMA_05G033600 -53.75 LOC100787419 E3 ubiquitin-protein ligase PUB23 100787419 GLYMA_12G188900 -53.70 LOC100812879 laccase-7 100812879 GLYMA_03G073776v4 -53.68 LOC100811628 dirigent protein 22 100811628 GLYMA_03G044500 -53.38 LOC100794576 F-box protein PP2-B15-like 100794576 GLYMA_10G150400 -53.37 LOC100781051 putative wall-associated receptor kinase-like 16 100781051 GLYMA_14G158600 -53.28 LOC100794340 U-box domain-containing protein 21 100794340 GLYMA_07G106000 -53.27 LOC102662455 uncharacterized LOC102662455 102662455 GLYMA_20G134000 -53.14 CHR5 chalcone reductase CHR5 100820161 GLYMA_18G285800 -53.09 LOC100805346 disease resistance protein RPM1 100805346 GLYMA_01G010700 -53.07 LOC100804361 putative UDP-glucose glucosyltransferase 100804361 GLYMA_20G128100 -53.01 CHR6 chalcone reductase CHR6 100800931 GLYMA_02G307300 -52.90 100801599 glucan endo-1,3-beta-glucosidase 100801599 GLYMA_15G142400 -52.77 LOC100820166 dynamin-related protein 1E 100820166 GLYMA_03G102800 -52.74 LOC100526951 uncharacterized LOC100526951 100526951 GLYMA_05G099300 -52.65 LOC100780940 LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.4 100780940 GLYMA_02G088700 -52.54 H4 stress-induced protein H4 547916 GLYMA_17G030200 -52.52 LOC100776310 G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 100776310 GLYMA_09G099100 -52.45 LOC100779078 probable aldo-keto reductase 2 100779078 GLYMA_06G260200 -52.42 LOC100306134 kunitz family trypsin and protease inhibitor 100306134 GLYMA_16G212400 -52.35 LOC100785371 cytochrome b561 and DOMON domain-containing protein At5g47530 100785371 GLYMA_17G008000 -52.21	Lower 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC100786744 beta-xylosidase/alpha-L-arabinofuranosidase 2 100786744 GLYMA_08G074700 -73.74 LOC100527818 alpha-amylase inhibitor/lipid transfer/seed storage family protein 100527818 GLYMA_17G139500 -71.48 LOC100793900 endoglucanase 17 100793900 GLYMA_03G216100 -69.78 CEL7 alpha family endo-beta-1,4-glucanase 100777718 GLYMA_02G016400 -68.20 LOC100809450 patellin-4 100809450 GLYMA_09G028400 -66.50 LOC100499716 extensin-like protein 100499716 GLYMA_17G139700 -65.85 LOC100812466 heat stress transcription factor B-4 100812466 GLYMA_17G241300 -65.47 LOC100819698 aspartic proteinase nepenthesin-1-like 100819698 GLYMA_13G196200 -64.89 LOC100792395 protein WALLS ARE THIN 1 100792395 GLYMA_14G216200 -64.75 LOC100804152 glucan endo-1,3-beta-glucosidase 2 100804152 GLYMA_11G216000 -64.21 GASA33 gibberellin-regulated protein 33 100527019 GLYMA_19G013000 -63.71 LOC100779100 patellin-4-like 100779100 GLYMA_15G134400 -63.17 LOC100801571 probable LRR receptor-like serine/threonine-protein kinase At4g36180 100801571 GLYMA_06G026600 -62.97 LOC100788369 protein POLLENLESS 3-LIKE 2 100788369 GLYMA_16G124700 -62.13 LOC100780385 protein GRAVITROPIC IN THE LIGHT 1 100780385 GLYMA_02G235400 -62.10 LOC102660494 leucine-rich repeat receptor-like protein kinase PXC1 102660494 GLYMA_13G150000 -61.95 LOC100800621 uncharacterized LOC100800621 100800621 GLYMA_20G168200 -61.45 LOC100783033 high mobility group B protein 6 100783033 GLYMA_08G021700 -61.27 LOC102663430 lysine-rich arabinogalactan protein 19 102663430 GLYMA_18G077000 -61.25 LOC100777472 non-classical arabinogalactan protein 31 100777472 GLYMA_13G178700 -61.08 LOC100306413 X8 domain-containiong protein 100306413 GLYMA_11G255800 -60.95 LOC100787008 DNA topoisomerase 2-like 100787008 GLYMA_10G090000v4 -60.57 LOC100802454 AP2-like ethylene-responsive transcription factor ANT 100802454 GLYMA_06G049200 -60.53 LOC100791755 protein TORNADO 2 100791755 GLYMA_09G205400 -60.52 LOC100782311 rop guanine nucleotide exchange factor 5-like 100782311 GLYMA_14G064000v4 -60.41 LOC100815062 probable pectate lyase 12 100815062 GLYMA_13G145900 -60.30 LOC100787611 AP2-like ethylene-responsive transcription factor ANT 100787611 GLYMA_05G108600 -60.23 LOC100799290 probably inactive leucine-rich repeat receptor-like protein kinase IMK2 100799290 GLYMA_01G125800 -60.22 LOC100799995 uncharacterized LOC100799995 100799995 GLYMA_16G128800 -60.17 LOC100778600 protein CHUP1, chloroplastic 100778600 GLYMA_17G229000 -59.90 LOC102664101 classical arabinogalactan protein 4 102664101 GLYMA_08G329600 -59.62 LOC100781126 chromatin-remodeling ATPase INO80 100781126 GLYMA_02G048700 -59.39 LOC100808387 uncharacterized LOC100808387 100808387 GLYMA_10G223700 -59.18 LOC100787223 AP2-like ethylene-responsive transcription factor ANT 100787223 GLYMA_04G047900 -59.15 LOC100500130 uncharacterized LOC100500130 100500130 GLYMA_18G245100 -58.99 LOC100802662 endoglucanase 8 100802662 GLYMA_08G043600 -58.92 LOC100779213 transcription factor bHLH96 100779213 GLYMA_20G231800 -58.40 LOC100816016 syntaxin-related protein KNOLLE 100816016 GLYMA_16G151200 -58.26 LOC100814945 uncharacterized LOC100814945 100814945 GLYMA_08G118100 -58.08 LOC100799493 syntaxin-related protein KNOLLE 100799493 GLYMA_02G069700 -57.93 LOC100803414 protein POLLENLESS 3-LIKE 2 100803414 GLYMA_02G046200 -57.79 LOC100798505 glucan endo-1,3-beta-glucosidase 12 100798505 GLYMA_11G048700 -57.71 LOC100782933 malonyl-CoA:anthocyanidin 5-O-glucoside-6''-O-malonyltransferase 100782933 GLYMA_18G258000 -57.51 IQD50 protein IQ-DOMAIN 50 100787102 GLYMA_14G097000 -57.43 LOC100811077 glucan endo-1,3-beta-glucosidase 2 100811077 GLYMA_18G040600 -57.33 LOC102665651 probable pectinesterase/pectinesterase inhibitor 12 102665651 GLYMA_09G076200 -57.22 LOC100810646 histone H3.2 100810646 GLYMA_15G222200 -56.93 IQD18 protein IQ-DOMAIN 18 100782825 GLYMA_06G052800 -56.92 LOC100814278 rop guanine nucleotide exchange factor 5 100814278 GLYMA_02G252600 -56.67 LOC100780813 heat stress transcription factor B-4 100780813 GLYMA_04G039600 -56.53 LOC547938 defensin-like protein 547938 GLYMA_06G160300 -56.44 RHG1 receptor-like kinase RHG1 547641 GLYMA_18G023500 -56.42 LOC100527002 TWS1-like protein 100527002 GLYMA_17G236500 -56.41 LOC100796327 probable pectinesterase 68 100796327 GLYMA_17G141700 -56.36 LOC100305464 uncharacterized LOC100305464 100305464 GLYMA_13G056500 -56.31 LOC100787121 ATP-citrate synthase alpha chain protein 1 100787121 GLYMA_08G159900 -56.16 LOC100783028 CASP-like protein 3A1 100783028 GLYMA_07G017000 -56.15 LOC100819733 uncharacterized protein At4g38062 100819733 GLYMA_08G279600 -55.97 LOC100305461 protein trichome birefringence-like 36 100305461 GLYMA_10G111200 -55.91 LOC100787086 RNA-binding protein 38 100787086 GLYMA_13G089800 -55.90 LOC100795082 uncharacterized LOC100795082 100795082 GLYMA_17G049450v4 -55.87 LOC100780795 phenolic glucoside malonyltransferase 1-like 100780795 GLYMA_19G030700 -55.55 LOC100788934 uncharacterized protein At1g65710 100788934 GLYMA_02G239000 -55.38 LOC100782374 histone H2A variant 1 100782374 GLYMA_02G143200 -55.37 LOC100527707 uncharacterized LOC100527707 100527707 GLYMA_08G366700 -55.27 LOC100527682 heat stress transcription factor B-4b 100527682 GLYMA_02G278400 -55.18 LOC100792196 alpha-amylase inhibitor/lipid transfer/seed storage family protein 100792196 GLYMA_13G005500 -55.17 LOC100803585 uncharacterized LOC100803585 100803585 GLYMA_02G308300 -55.14 LOC100818932 histone H3.2 100818932 GLYMA_12G055200 -55.12 LOC100783363 LRR receptor-like serine/threonine-protein kinase FEI 1 100783363 GLYMA_06G190000 -55.11 LOC100527769 uncharacterized LOC100527769 100527769 GLYMA_11G120400 -55.05 LOC100527535 uncharacterized LOC100527535 100527535 GLYMA_08G210200 -55.05 LOC100802583 uncharacterized protein At5g39865 100802583 GLYMA_10G195200 -54.79 LOC100808883 uncharacterized LOC100808883 100808883 GLYMA_01G031300 -54.74 LOC100799839 cyclin-dependent kinase B2-2 100799839 GLYMA_09G071300 -54.67 LOC100804591 kinesin-like protein KIN-10B 100804591 GLYMA_07G132100 -54.65 LOC100810031 probable pectinesterase 68 100810031 GLYMA_11G032700 -54.42 LOC100789144 endoglucanase 17 100789144 GLYMA_10G017000 -54.38 LOC100786517 dynamin-related protein 5A 100786517 GLYMA_12G152100 -54.36 LOC100305551 early nodulin-like protein 100305551 GLYMA_04G060600 -54.35 LOC100500347 uncharacterized LOC100500347 100500347 GLYMA_11G056600 -54.33 LOC100788516 RNA-binding protein 38 100788516 GLYMA_14G174600 -54.33 LOC100784469 uncharacterized LOC100784469 100784469 GLYMA_15G149700 -54.28 LOC100789005 microtubule-binding protein TANGLED 100789005 GLYMA_20G234200 -54.19 LOC100804767 glucan endo-1,3-beta-glucosidase 100804767 GLYMA_15G243000 -54.10 LOC100805280 dentin sialophosphoprotein 100805280 GLYMA_14G207900 -54.05 LOC100786173 scarecrow-like protein 28 100786173 GLYMA_05G049300 -53.98 LOC100792715 36.4 kDa proline-rich protein 100792715 GLYMA_20G062700 -53.96 LOC100788182 aspartyl protease AED3-like 100788182 GLYMA_15G234300v4 -53.92 LOC121173344 uncharacterized LOC121173344 121173344 -53.88 GASA21 gibberellin-regulated protein 21 100527676 GLYMA_13G069900 -53.87 LOC100813335 uncharacterized LOC100813335 100813335 GLYMA_08G102500 -53.85 LOC100793639 LRR receptor-like serine/threonine-protein kinase GHR1 100793639 GLYMA_15G130900 -53.81 LOC100817781 glucan endo-1,3-beta-glucosidase 13 100817781 GLYMA_01G193100 -53.79 LOC100816760 protein POLYCHOME 100816760 GLYMA_03G141800 -53.71 LOC100499847 zinc finger Ran-binding domain-containing protein 100499847 GLYMA_07G032300 -53.70 LOC100810353 probably inactive leucine-rich repeat receptor-like protein kinase IMK2 100810353 GLYMA_11G233500 -53.65 LOC100814896 protein CHUP1, chloroplastic 100814896 GLYMA_13G231000 -53.61 LOC100810041 uncharacterized LOC100810041 100810041 GLYMA_19G082000 -53.56 LOC100777890 scarecrow-like protein 28 100777890 GLYMA_17G131200 -53.54	Lower 100 Genes Symbol Function* Entrez Gene ID* Other ID PC SWEET11 sugar efflux transporter SWEET11 100810946 GLYMA_05G202700 -47.09 LOC100800966 U-box domain-containing protein 100800966 GLYMA_11G214500 -46.88 LOC100794343 ferric reduction oxidase 7, chloroplastic 100794343 GLYMA_15G124700 -46.60 LOC100799682 respiratory burst oxidase homolog protein B-like 100799682 GLYMA_10G152200v4 -46.18 SWEET21 sugar efflux transporter SWEET21 100805676 GLYMA_08G010000 -45.69 LOC100806805 BON1-associated protein 2 100806805 GLYMA_03G016300 -44.79 LOC100804994 ferric reduction oxidase 7, chloroplastic 100804994 GLYMA_09G018600 -44.39 NAC6 NAC domain protein NAC6 732555 GLYMA_12G022700 -44.17 LOC100811980 leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1 100811980 GLYMA_04G190400 -44.13 LOC100813644 coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 2 100813644 GLYMA_13G302500 -43.95 LOC100775872 calcium-binding protein KRP1 100775872 GLYMA_06G258000 -42.88 LOC100782182 rust resistance kinase Lr10 100782182 GLYMA_17G214400 -42.12 LOC100792142 trans-cinnamate:CoA ligase, peroxisomal 100792142 GLYMA_11G209681v4 -41.71 LOC113001937 acanthoscurrin-2-like 113001937 -41.66 LOC100807334 uncharacterized LOC100807334 100807334 GLYMA_03G016400 -41.61 LOC100782716 rust resistance kinase Lr10 100782716 GLYMA_17G214900 -41.60 LOC100781099 rust resistance kinase Lr10 100781099 GLYMA_17G214600 -41.54 LOC100305358 stress-induced receptor-like kinase 100305358 GLYMA_17G214100 -41.39 LOC111240476 putative calcium-binding protein 111240476 GLYMA_04G136200 -41.38 LOC100527035 uncharacterized LOC100527035 100527035 GLYMA_12G142900 -41.30 LOC100819452 amino acid transporter protein 100819452 GLYMA_11G082700 -41.30 LOC100814381 TPR repeat-containing thioredoxin TTL1 100814381 GLYMA_06G104600 -41.22 LOC100305458 NBS-LRR type disease resistance protein 100305458 GLYMA_01G010500 -41.20 LOC100786354 calmodulin-like protein 30 100786354 GLYMA_05G085200 -41.20 WRKY46 WRKY transcription factor 46 100127375 GLYMA_08G021900 -40.95 LOC100792170 uncharacterized LOC100792170 100792170 GLYMA_20G124200 -40.85 LOC547566 indole-3-acetic acid induced protein ARG-2 homolog 547566 GLYMA_03G253200 -40.61 LOC100790838 lysine histidine transporter 1 100790838 GLYMA_16G062500 -40.60 LOC100812027 probable WRKY transcription factor 53 100812027 GLYMA_06G125600 -40.57 DREB1-like CRT binding factor 1 547622 GLYMA_09G147200 -40.53 LOC100815760 probable WRKY transcription factor 41 100815760 GLYMA_05G215900 -40.51 LOC100780491 derlin-1.1 100780491 GLYMA_06G317800 -40.41 LOC100816770 NAC domain-containing protein 100816770 GLYMA_11G096600 -40.34 LOC100797878 beta-amyrin synthase 100797878 GLYMA_15G065600 -40.22 LOC100306254 uncharacterized LOC100306254 100306254 GLYMA_16G178000 -40.10 LOC100813126 AAA-ATPase ASD, mitochondrial 100813126 GLYMA_13G066100 -39.90 LOC100306170 heavy-metal-associated domain-containing protein 100306170 GLYMA_10G230600 -39.86 LOC100810407 receptor-like serine/threonine-protein kinase SD1-8 100810407 GLYMA_12G140200 -39.85 LOC100803945 carbonic anhydrase 2 100803945 GLYMA_02G035000 -39.78 ACS 1-aminocyclopropane-1-carboxylate synthase 100037458 GLYMA_08G018000 -39.74 LOC100797696 repetitive proline-rich cell wall protein 1 100797696 GLYMA_15G238600 -39.60 LOC100527186 nudix hydrolase family protein 100527186 GLYMA_08G045200 -39.40 LOC100806797 calcium-transporting ATPase 12, plasma membrane-type 100806797 GLYMA_03G1577002 -39.33 LOC100816903 probable serine/threonine-protein kinase PIX13 100816903 GLYMA_17G056900 -39.19 LOC100499697 uncharacterized LOC100499697 100499697 -39.14 LOC100790247 lysosomal Pro-X carboxypeptidase 100790247 GLYMA_12G179600 -39.00 LOC100799869 putative F-box protein PP2-B12 100799869 GLYMA_10G169300 -38.97 LOC100305446 disease resistance protein 100305446 GLYMA_18G195200 -38.95 LOC100500367 uncharacterized LOC100500367 100500367 -38.88 LOC100795913 U-box domain-containing protein 20 100795913 GLYMA_14G212200 -38.61 LOC100305571 uncharacterized LOC100305571 100305571 GLYMA_12G196200 -38.58 LOC100795681 uncharacterized LOC100795681 100795681 GLYMA_20G125500 -38.54 LOC100787907 benzyl alcohol O-benzoyltransferase 100787907 GLYMA_03G244400 -38.52 LOC100798289 uncharacterized LOC100798289 100798289 GLYMA_18G121900 -38.43 LOC106796952 uncharacterized LOC106796952 106796952 -38.36 LOC100794249 NDR1/HIN1-like protein 10 100794249 GLYMA_03G201302v4 -38.23 LOC102660202 uncharacterized LOC102660202 102660202 GLYMA_12G224000 -38.11 LOC100795391 uncharacterized LOC100795391 100795391 GLYMA_07G133500 -38.11 LOC100804277 protein ALP1-like 100804277 -38.05 LOC100817359 purple acid phosphatase 3-like 100817359 GLYMA_05G247800 -37.95 LOC100811907 rust resistance kinase Lr10 100811907 GLYMA_17G214700 -37.85 LOC100788183 protein SAR DEFICIENT 1 100788183 GLYMA_08G044400 -37.84 LOC100809236 rust resistance kinase Lr10 100809236 GLYMA_17G214200 -37.82 LOC106799532 protein QUIRKY-like 106799532 GLYMA_08G151100 -37.80 MYB114 MYB transcription factor MYB114 778086 GLYMA_03G261800 -37.78 LOC100813531 rust resistance kinase Lr10 100813531 GLYMA_17G214500 -37.76 LOC100810032 uncharacterized LOC100810032 100810032 GLYMA_19G215700 -37.75 LOC100804202 uncharacterized LOC100804202 100804202 GLYMA_13G157400 -37.73 LOC100776077 uncharacterized LOC100776077 100776077 GLYMA_15G268200 -37.59 SBPRP proline-rich protein 547594 GLYMA_14G115500 -37.59 LOC100795696 dehydration-responsive element-binding protein 1F 100795696 GLYMA_05G049900 -37.57 LOC100793099 receptor-like protein 13 100793099 GLYMA_07G143500v4 -37.41 LOC100777247 cyanogenic beta-glucosidase 100777247 GLYMA_11G129800 -37.30 LOC100500076 lysine histidine transporter-like 8 100500076 GLYMA_01G161100 -37.28 LOC100779075 BEL1-like homeodomain protein 1 100779075 GLYMA_13G312900 -37.28 LOC100817263 dirigent protein 19 100817263 GLYMA_09G198900 -37.15 LOC100803804 probable NAD(P)H dehydrogenase (quinone) FQR1-like 2 100803804 GLYMA_11G120200 -37.13 LOC102669378 uncharacterized LOC102669378 102669378 GLYMA_03G016100 -37.05 ACS1 1-aminocyclopropane 1-carboxylate synthase 547976 GLYMA_05G211700 -37.04 LOC100306479 non-specific lipid-transfer protein 2 100306479 GLYMA_18G294200 -36.90 LCL3 LHY1/CCA1-like protein 780540 GLYMA_19G260900 -36.89 LOC100788531 heat shock 70 kDa protein-like 100788531 GLYMA_15G088000 -36.79 LOC100788151 leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1 100788151 GLYMA_06G175100 -36.76 LOC100805464 protein DOWNY MILDEW RESISTANCE 6 100805464 GLYMA_06G137000 -36.73 LOC102667501 uncharacterized LOC102667501 102667501 GLYMA_03G179100 -36.71 LOC100775839 probable inactive purple acid phosphatase 27 100775839 GLYMA_12G012000 -36.71 LOC100781977 LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1 100781977 GLYMA_08G044300 -36.69 LOC100793962 uncharacterized LOC100793962 100793962 GLYMA_13G065200 -36.69 LOC100776906 probable WRKY transcription factor 30 100776906 GLYMA_04G238300 -36.54 SCAM-4 calmodulin 547787 GLYMA_10G178400 -36.53 LOC100800820 inositol-3-phosphate synthase 100800820 GLYMA_05G180600 -36.50 LOC100819910 TMV resistance protein N 100819910 GLYMA_16G137000 -36.50 LOC100788672 protein ALP1-like 100788672 -36.47 LOC100800722 cytokinin dehydrogenase 6 100800722 GLYMA_09G225400 -36.45 4CL1 4-coumarate:coenzyme A ligase 548034 GLYMA_17G064600 -36.32 LOC100306444 heavy-metal-associated domain-containing protein 100306444 GLYMA_09G130400 -36.27 SWEET15 sugar efflux transporter SWEET15 100810426 GLYMA_06G166800 -36.27 LOC100817853 oxalate--CoA ligase 100817853 GLYMA_11G198300 -36.23 LOC100802257 protein SAR DEFICIENT 1 100802257 GLYMA_05G237200 -36.22 RCA11 ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like 100818034 GLYMA_11G221000 -36.21	Lower 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC100786014 proline-rich protein 4 100786014 GLYMA_13G200300 -52.49 LOC100801057 glycine-rich protein 5 100801057 GLYMA_08G319200 -48.13 LOC100306381 SRPBCC ligand-binding domain superfamily protein 100306381 GLYMA_09G040800 -47.09 LOC100809988 aspartyl protease AED3 100809988 GLYMA_02G213000 -47.05 LOC100780206 aspartyl protease family protein At5g10770 100780206 GLYMA_09G017900 -43.95 LOC113002373 uncharacterized LOC113002373 113002373 GLYMA_08G069300 -43.57 LOC100783267 MLP-like protein 423-like 100783267 GLYMA_02G032300 -43.41 LOC100813910 uncharacterized LOC100813910 100813910 GLYMA_17G208200 -42.83 ANR1 anthocyanidin reductase 1 100805127 GLYMA_08G062000 -42.79 LOC100792205 bark storage protein A-like 100792205 GLYMA_06G084200 -41.59 LOC100797313 peroxidase 29 100797313 GLYMA_07G263000 -41.27 LOC102664284 FCS-Like Zinc finger 15 102664284 GLYMA_15G150200 -40.35 LOC100792710 B3 domain-containing protein REM20 100792710 GLYMA_12G049900 -40.18 LOC100791876 uncharacterized LOC100791876 100791876 GLYMA_14G053500 -39.84 LOC100796752 protein HOTHEAD 100796752 GLYMA_05G050100 -39.82 LOC121173479 uncharacterized LOC121173479 121173479 -39.50 LOC100792254 UPF0481 protein At3g47200 100792254 GLYMA_16G161300 -38.87 MSG MLP-like protein 28-like 100807033 GLYMA_20G017900 -38.44 LOC100811751 lysosomal Pro-X carboxypeptidase 100811751 GLYMA_01G065400 -38.29 LOC100500666 alpha-crystallin domain-containing protein 100500666 GLYMA_14G100000 -38.11 LOC100782856 flowering-promoting factor 1-like protein 3 100782856 GLYMA_07G248400 -37.77 BURP2 BURP domain protein 2 100272209 GLYMA_14G140900 -37.52 LOC100790826 elongation factor 2 100790826 GLYMA_15G256900 -37.29 LOC100811871 protein DETOXIFICATION 41 100811871 GLYMA_14G032400 -37.20 LOC100777980 endo-1,4-beta-xylanase 5-like 100777980 GLYMA_20G134200 -37.02 LOC100780572 beta-glucosidase BoGH3B 100780572 GLYMA_02G272100 -36.88 LOC100805078 K-box region and MADS-box domain-containing protein 100805078 GLYMA_05G148800 -36.78 LOC121174775 glycine-rich cell wall structural protein 1-like 121174775 GLYMA_04G079100v4 -36.73 LOC102663137 classical arabinogalactan protein 9 102663137 GLYMA_13G215100 -36.64 LOC100798032 probable serine/threonine-protein kinase PBL23 100798032 GLYMA_14G025200 -36.58 LOC100802367 endo-1,4-beta-xylanase 5-like 100802367 GLYMA_10G257000 -36.37 LOC100810594 B3 domain-containing protein REM20 100810594 GLYMA_12G048500 -36.26 LOC100806075 low-temperature-induced 65 kDa protein 100806075 GLYMA_10G236000 -36.21 LOC100787093 ABC transporter B family member 13 100787093 GLYMA_14G220200 -36.19 LOC121175092 UDP-glycosyltransferase 88F5-like 121175092 -36.14 LOC100814569 MLP-like protein 34 100814569 GLYMA_15G146400 -35.97 LOC100813843 putative cell wall protein 100813843 GLYMA_06G296300 -35.88 LOC100809979 polygalacturonase At1g48100 100809979 GLYMA_09G031600 -35.85 LOC100787303 albumin-1 100787303 GLYMA_08G230700 -35.77 LOC100818597 uncharacterized LOC100818597 100818597 GLYMA_20G151700 -35.49 LOC100306696 uncharacterized LOC100306696 100306696 GLYMA_10G043100 -35.49 LOC100776781 probable pectinesterase/pectinesterase inhibitor 47 100776781 GLYMA_15G223500 -35.41 LOC100783940 protein JINGUBANG 100783940 GLYMA_15G017700 -35.39 LOC100788078 glycine-rich protein 5 100788078 GLYMA_18G094300 -35.31 LOC100170724 BURP domain-containing protein 100170724 GLYMA_14G141000 -35.23 LOC100816816 GDSL esterase/lipase At5g33370 100816816 GLYMA_13G045100 -35.06 LOC100527629 putative expansin 100527629 GLYMA_04G021600 -34.97 LOC100777690 pyruvate decarboxylase 1 100777690 GLYMA_08G176600 -34.94 AGL1L agamous-like MADS-box protein AGL1-like 100817239 GLYMA_08G310100 -34.90 LOC100781908 transcription factor MYB1 100781908 GLYMA_13G109100 -34.72 DFR2 dihydroflavonol-4-reductase 732626 GLYMA_17G252200 -34.57 LOC100802108 15.7 kDa heat shock protein, peroxisomal-like 100802108 GLYMA_14G214800 -34.54 LOC100820032 GDSL esterase/lipase At2g04570 100820032 GLYMA_13G026300 -34.45 LOC102670183 protein ECERIFERUM 2 102670183 GLYMA_03G246600 -34.28 MYB205 transcription factor MYB205 100802704 GLYMA_17G050500 -34.09 SCB1 seed coat BURP domain protein 1 548039 GLYMA_07G176700 -33.92 LOC100306119 tau class glutathione S-transferase 100306119 GLYMA_01G106100 -33.87 LOC100527769 uncharacterized LOC100527769 100527769 GLYMA_11G120400 -33.86 LOC100780028 protein HOTHEAD 100780028 GLYMA_17G132100 -33.84 MYB11 MYB11 protein 100101835 GLYMA_19G024700 -33.73 LOC100500579 kunitz-type trypsin inhibitor 100500579 GLYMA_01G095232v4 -33.72 SWEET48 sugar efflux transporter SWEET48 100811287 GLYMA_19G009900 -33.71 LOC100776361 BAHD acyltransferase-like protein 100776361 GLYMA_11G037200 -33.62 MADS28 MADS transcription factor 547686 GLYMA_18G0047001 -33.59 LOC100784445 uncharacterized LOC100784445 100784445 GLYMA_14G172800 -33.54 LOC100816394 transcription factor bHLH30 100816394 GLYMA_02G213800 -33.53 LOC100777403 3-ketoacyl-CoA synthase 19 100777403 GLYMA_10G291700 -33.49 LOC100804396 protein RADIALIS-like 1 100804396 GLYMA_06G309200 -33.45 LOC100780626 uncharacterized LOC100780626 100780626 GLYMA_04G005100 -33.26 FRD3b ferric reductase defective 3b 100303753 GLYMA_09G102800 -33.21 LOC106798116 uncharacterized LOC106798116 106798116 -33.14 LOC100811754 transcription factor MYB114 100811754 GLYMA_17G143600 -33.14 LOC100775374 GRAS family protein RAM1 100775374 GLYMA_16G053000 -33.06 LOC100811418 4-coumarate--CoA ligase-like 1 100811418 GLYMA_18G076900 -33.06 LOC100819691 GDSL esterase/lipase At5g45950 100819691 GLYMA_13G233600 -32.99 LOC102667357 neurofilament medium polypeptide 102667357 GLYMA_18G285100 -32.93 LOC100778931 agamous-like MADS-box protein MADS4 100778931 GLYMA_08G105500 -32.92 SWEET33 sugar efflux transporter SWEET33 102666983 GLYMA_13G169700 -32.80 LOC100814926 laccase-7 100814926 GLYMA_07G142500 -32.76 LOC100791383 NEP1-interacting protein 2 100791383 GLYMA_16G121900 -32.69 LOC100807596 uncharacterized LOC100807596 100807596 GLYMA_06G004900 -32.59 LOC100797557 probable serine/threonine-protein kinase PBL23 100797557 GLYMA_02G289800 -32.57 AGL11 MADS domain transporter AGL11 100301905 GLYMA_06G324400 -32.47 LOC100785791 protein PIN-LIKES 7 100785791 GLYMA_11G087300 -32.43 LOC100806821 ethylene-responsive transcription factor SHINE 2 100806821 GLYMA_04G067200 -32.39 LOC100306307 AAI_LTSS superfamily protein 100306307 GLYMA_17G212200 -32.38 LOC100776947 3-ketoacyl-CoA synthase 12 100776947 GLYMA_13G331600 -32.26 LOC100812106 flowering-promoting factor 1-like protein 3 100812106 GLYMA_17G025700 -32.22 F3H flavanone 3-hydroxylase 732548 GLYMA_02G048400 -32.21 GLYI-17 putative lactoylglutathione lyase 100305781 GLYMA_12G167400 -32.15 LOC100798620 pectinesterase/pectinesterase inhibitor PPE8B 100798620 GLYMA_09G076600 -32.13 LOC100818637 beta-galactosidase 6 100818637 GLYMA_06G157300 -32.10 LOC100818557 very-long-chain aldehyde decarbonylase CER1 100818557 GLYMA_03G101700 -31.91 LOC100776765 cell wall-associated protein BIIDXI-like 100776765 GLYMA_14G126200 -31.86 LOC102666289 L-ascorbate oxidase 102666289 GLYMA_14G041300 -31.80 LOC100798361 14 kDa proline-rich protein DC2.15 100798361 GLYMA_05G057100 -31.76 LOC100808083 myb-related protein 308-like 100808083 GLYMA_04G205100 -31.72 LOC100804540 MADS-box protein FLOWERING LOCUS C 100804540 GLYMA_05G148700 -31.70 LOC100800634 GDSL esterase/lipase At5g33370 100800634 GLYMA_05G116300 -31.24 LOC100811728 3-ketoacyl-CoA synthase 6 100811728 GLYMA_08G261100 -31.21	Lower 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC100788166 uncharacterized LOC100788166 100788166 GLYMA_14G026100 -63.16 GASA10 gibberellin-regulated protein 10 100789576 GLYMA_06G185300 -57.94 LOC100783357 uncharacterized LOC100783357 100783357 GLYMA_06G235100 -56.72 LOC100792182 uncharacterized LOC100792182 100792182 GLYMA_20G031200 -47.93 LOC100775728 uncharacterized LOC100775728 100775728 GLYMA_16G153000 -43.88 LOC100306125 putative ethylene-responsive transcription factor 100306125 GLYMA_20G195900 -43.70 LOC100785395 uncharacterized LOC100785395 100785395 GLYMA_02G288700 -42.25 LOC100808693 copper transporter 2 100808693 GLYMA_01G106700 -41.33 LOC100782877 uncharacterized LOC100782877 100782877 GLYMA_16G177800 -39.97 LOC100810981 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic 100810981 GLYMA_07G166400 -39.86 LOC100801038 protein CHLOROPLAST IMPORT APPARATUS 2 100801038 GLYMA_14G197900 -39.26 LOC100788734 G-type lectin S-receptor-like serine/threonine-protein kinase LECRK3 100788734 GLYMA_01G206500 -39.09 GASA6 gibberellin-regulated protein 6 100305516 GLYMA_04G179500 -39.02 CRK62 cysteine-rich receptor-like protein kinase 100775428 GLYMA_18G237900 -38.93 LOC100306315 uncharacterized LOC100306315 100306315 GLYMA_06G069100 -38.43 LOC100306349 uncharacterized LOC100306349 100306349 GLYMA_08G334500 -38.22 LOC100792588 protein DETOXIFICATION 16 100792588 GLYMA_08G050500 -38.03 LOC100803772 CCT motif family protein 100803772 GLYMA_02G230800 -37.87 LOC100791650 uncharacterized LOC100791650 100791650 GLYMA_12G224300 -37.65 LOC732549 nitrate and chloride transporter 732549 GLYMA_10G276700 -37.12 LOC100305960 putative light-regulated protein 1 100305960 GLYMA_16G049000 -36.99 GER10 germin-like protein 100806553 GLYMA_15G176900 -36.76 COL22 zinc finger protein CONSTANS-LIKE 16-like 100782921 GLYMA_10G274300 -36.72 LOC100801597 uncharacterized LOC100801597 100801597 GLYMA_15G007900 -36.08 LOC100785268 uncharacterized LOC100785268 100785268 GLYMA_19G174600 -35.88 LOC102666152 inactive LRR receptor-like serine/threonine-protein kinase BIR2 102666152 GLYMA_13G067200 -35.67 LOC100808412 serine carboxypeptidase-like 51 100808412 GLYMA_11G191200 -35.53 LOC100787230 uncharacterized LOC100787230 100787230 GLYMA_20G157000 -35.50 LOC100816615 light-regulated protein-like 100816615 GLYMA_19G102400 -34.64 LOC102668481 uncharacterized LOC102668481 102668481 GLYMA_12G008400 -34.56 LOC102663230 15.4 kDa class V heat shock protein-like 102663230 GLYMA_13G205800 -34.52 LOC100783074 uncharacterized LOC100783074 100783074 GLYMA_09G143000 -34.44 LOC100801015 serine carboxypeptidase-like 11 100801015 GLYMA_06G047400 -34.31 LOC100785674 putative wall-associated receptor kinase-like 16 100785674 GLYMA_13G035700 -34.21 LOC100812929 beta-glucosidase 18 100812929 GLYMA_13G278600 -33.31 LOC100788953 thiamine thiazole synthase 2, chloroplastic 100788953 GLYMA_10G251500 -33.24 ALDH2B6 aldehyde dehydrogenase family 2 member B6 100798892 GLYMA_13G170600 -33.20 LOC100820620 cationic peroxidase 2 100820620 GLYMA_15G052700 -33.14 LOC100500642 uncharacterized LOC100500642 100500642 GLYMA_14G022200 -33.10 LOC100811254 uncharacterized LOC100811254 100811254 GLYMA_18G067500 -33.07 LOC100776887 chaperone protein dnaJ C76, chloroplastic 100776887 GLYMA_19G063100 -32.70 LOC100800542 homeobox protein BEL1 homolog 100800542 GLYMA_01G221500 -32.42 LOC100793777 probable WRKY transcription factor 65 100793777 GLYMA_05G160800 -32.41 LOC100817540 peroxidase 100817540 GLYMA_05G103600 -31.91 LOC100813493 probable methyltransferase PMT15 100813493 GLYMA_07G077400 -31.83 CRK1 cysteine-rich receptor-like protein kinase 100812828 GLYMA_01G013500 -31.58 LOC100527181 uncharacterized LOC100527181 100527181 GLYMA_07G138900 -31.53 LOC100798628 uncharacterized LOC100798628 100798628 GLYMA_02G292400 -30.83 LOC100783048 uncharacterized LOC100783048 100783048 GLYMA_08G336100 -30.74 LOC100814907 transcription factor TCP4 100814907 GLYMA_13G292500 -30.50 LOC100809502 F-box protein PP2-B15 100809502 GLYMA_19G231000 -30.47 LOC100795432 F-box protein PP2-B3 100795432 GLYMA_17G251700 -30.46 LOC100814602 RING-H2 finger protein ATL74 100814602 GLYMA_09G275300 -30.41 LOC100781766 uncharacterized LOC100781766 100781766 GLYMA_14G061300 -30.25 LOC100780817 cellulose synthase-like protein B5 100780817 GLYMA_12G191700 -30.24 LOC100808818 putative dynein light chain type 1 100808818 GLYMA_13G357500 -30.14 LOC100812277 uncharacterized LOC100812277 100812277 GLYMA_01G107700 -30.06 GASA9 gibberellin-regulated protein 9 100306110 GLYMA_06G044400 -29.97 LOC106795462 beta-galactosidase 106795462 GLYMA_13G104000 -29.82 LOC100790198 1-aminocyclopropane-1-carboxylate oxidase homolog 12-like 100790198 GLYMA_18G164100 -29.82 LOC100305614 uncharacterized LOC100305614 100305614 GLYMA_02G136700 -29.76 LOC100810397 phosphomannomutase/phosphoglucomutase 100810397 GLYMA_20G018000 -29.73 LOC100785582 probable galactinol--sucrose galactosyltransferase 1 100785582 GLYMA_02G303300 -29.73 LOC100305493 cytidine/deoxycytidylate deaminase family protein 100305493 GLYMA_15G186100 -29.56 LOC100791173 F-box only protein 6 100791173 GLYMA_07G032000 -29.55 LOC100811730 uncharacterized LOC100811730 100811730 GLYMA_16G196000 -29.53 LOC100801065 CBL-interacting serine/threonine-protein kinase 5 100801065 GLYMA_08G218400 -29.52 LOC100790743 WAT1-related protein At3g28050 100790743 GLYMA_19G011500 -29.44 LOC100791805 WAT1-related protein At3g28050 100791805 GLYMA_19G011600 -29.33 LOC100527802 uncharacterized LOC100527802 100527802 GLYMA_05G158200 -29.27 LOC100500494 uncharacterized LOC100500494 100500494 GLYMA_12G100600 -29.22 LOC102664934 uncharacterized LOC102664934 102664934 -29.21 LOC100807157 basic helix-loop-helix protein A 100807157 GLYMA_10G026000 -29.18 LOC100787756 3-hexulose-6-phosphate isomerase 100787756 GLYMA_20G157100 -28.96 LOC100792256 silicon efflux transporter LSI2 100792256 GLYMA_16G180900 -28.81 LOC100808567 ring finger domain-containing protein 100808567 GLYMA_18G063500 -28.74 LOC100814789 transcription factor IBH1-like 1 100814789 GLYMA_17G068800 -28.64 LOC100305807 uncharacterized LOC100305807 100305807 GLYMA_11G105800 -28.49 LOC100805839 beta-D-xylosidase 1 100805839 GLYMA_15G143700 -28.41 LOC100788630 aspartyl protease AED3 100788630 GLYMA_04G091800 -28.33 LOC100818670 diacylglycerol O-acyltransferase 2D-like 100818670 GLYMA_16G115800 -28.28 LOC100802144 protein SUPPRESSOR OF PHYA-105 1 100802144 GLYMA_16G027200 -28.25 LOC106794215 MDIS1-interacting receptor like kinase 2 106794215 GLYMA_16G065700 -28.20 LOC100792167 oligopeptide transporter 7 100792167 GLYMA_20G067300 -28.19 LOC112998540 uncharacterized LOC112998540 112998540 GLYMA_12G048000 -27.91 LOC100527871 uncharacterized LOC100527871 100527871 -27.86 LOC100797957 non-specific lipid-transfer protein 1 100797957 GLYMA_18G052600 -27.77 LOC100796390 transcription factor TCP4 100796390 GLYMA_12G208800 -27.73 LOC102665189 cytochrome P450 71D11 102665189 GLYMA_20G007000 -27.60 LOC100795579 E3 ubiquitin-protein ligase RGLG4 100795579 GLYMA_08G234200 -27.52 LOC548030 glutathione S-transferase GST 16 548030 GLYMA_15G251900 -27.48 LOC100499732 DNA-binding domain-containing protein 100499732 GLYMA_10G194200 -27.48 LOC100803257 lysosomal Pro-X carboxypeptidase 100803257 GLYMA_03G199100 -27.36 LOC100791174 K(+) efflux antiporter 2, chloroplastic 100791174 GLYMA_07G073700 -27.35 LOC100801392 protein SOB FIVE-LIKE 6 100801392 GLYMA_06G047300 -27.33 LOC100810391 cytochrome P450 CYP82D47 100810391 GLYMA_04G035500 -27.21 LOC100820127 chaperonin-like RbcX protein 100820127 GLYMA_09G007000 -27.20 CRK75 cysteine-rich receptor-like protein kinase 100787936 GLYMA_20G138800 -27.11 LOC100794205 transcription factor MYB13 100794205 GLYMA_02G005600 -27.02 LOC100815921 cytochrome P450 71AP13 100815921 GLYMA_04G189700 -27.00	Lower 100 Genes Symbol Function* Entrez Gene ID* Other ID PC SALI5-4A sali5-4a protein 547882 GLYMA_12G217300 -44.90 LOC100777344 organic cation/carnitine transporter 1 100777344 GLYMA_16G216500 -43.79 LOC547898 Sali3-2 547898 GLYMA_12G217400 -43.54 LOC100779095 S-type anion channel SLAH4 100779095 GLYMA_07G262500 -42.60 LOC100799838 S-type anion channel SLAH4 100799838 GLYMA_17G011600 -42.51 LOC100101848 auxin down-regulated protein 100101848 GLYMA_10G214500 -41.96 LOC100783854 uncharacterized protein At5g65660 100783854 GLYMA_04G090000 -41.79 LOC100807991 vacuolar iron transporter homolog 2-like 100807991 GLYMA_16G168200 -41.23 LOC100305635 uncharacterized LOC100305635 100305635 GLYMA_18G190000 -40.85 LOC100306600 uncharacterized LOC100306600 100306600 GLYMA_17G069500 -39.12 LOC100799188 mini zinc finger protein 2 100799188 GLYMA_19G022200 -38.57 LOC100816013 galactan beta-1,4-galactosyltransferase GALS3 100816013 GLYMA_16G094100 -37.68 LOC100527208 uncharacterized LOC100527208 100527208 GLYMA_15G218900 -37.29 LOC100782388 probable pectate lyase 5 100782388 GLYMA_18G012200 -36.88 LOC100802179 vacuolar iron transporter homolog 3 100802179 GLYMA_02G082500 -36.62 LOC100499848 uncharacterized LOC100499848 100499848 GLYMA_08G230500 -36.49 PIP2-3 aquaporin PIP2-3 100818032 GLYMA_11G146500 -35.73 LOC100810277 non-specific lipid transfer protein GPI-anchored 5 100810277 GLYMA_07G139400 -35.46 LOC100808282 WAT1-related protein At1g44800 100808282 GLYMA_13G081000 -34.99 LOC100787267 dihydroflavonol-4-reductase-like 100787267 GLYMA_06G265700 -34.50 LOC100805300 chitinase-like protein 2-like 100805300 GLYMA_15G143600 -34.46 LOC100812537 uncharacterized LOC100812537 100812537 GLYMA_04G251000 -34.24 LOC100305853 uncharacterized LOC100305853 100305853 GLYMA_19G262400 -34.12 LOC100783460 homeobox-leucine zipper protein ATHB-20 100783460 GLYMA_18G258400 -33.97 LOC100305714 mini zinc finger protein 2 100305714 GLYMA_13G063100 -33.91 LOC100527473 uncharacterized LOC100527473 100527473 GLYMA_17G100900 -33.63 LOC100305748 uncharacterized LOC100305748 100305748 GLYMA_13G260000 -33.55 LOC100816256 probable pectate lyase 5 100816256 GLYMA_11G244900 -33.51 LOC100500479 uncharacterized LOC100500479 100500479 GLYMA_20G008400 -33.45 LOC100781528 xyloglucan endotransglucosylase/hydrolase protein 31 100781528 GLYMA_12G080100 -33.11 LOC100781253 uncharacterized LOC100781253 100781253 GLYMA_16G026100 -32.91 LOC100809033 uncharacterized LOC100809033 100809033 GLYMA_15G247800 -32.65 LOC100785571 protein trichome birefringence-like 33 100785571 GLYMA_02G262100 -32.61 LOC100803890 uncharacterized LOC100803890 100803890 -32.59 LOC112999142 28S ribosomal RNA 112999142 -32.58 LOC112999133 28S ribosomal RNA 112999133 -32.55 LOC100306003 stress-response A/B barrel domain-containing protein 100306003 GLYMA_11G188300 -32.53 LOC100813958 uncharacterized LOC100813958 100813958 GLYMA_11G123900 -32.48 LOC112999155 28S ribosomal RNA 112999155 -32.46 LOC112999111 28S ribosomal RNA 112999111 -32.42 LOC112999224 28S ribosomal RNA 112999224 -32.40 LOC100805257 protein DETOXIFICATION 56 100805257 GLYMA_05G054000 -32.38 LOC112999121 28S ribosomal RNA 112999121 -32.38 LOC112999168 28S ribosomal RNA 112999168 -32.35 LOC112999154 28S ribosomal RNA 112999154 -32.34 LOC112999114 28S ribosomal RNA 112999114 -32.32 LOC112999205 28S ribosomal RNA 112999205 -32.31 LOC112999135 28S ribosomal RNA 112999135 -32.31 LOC112999176 28S ribosomal RNA 112999176 -32.30 LOC112999131 28S ribosomal RNA 112999131 -32.28 LOC112999110 28S ribosomal RNA 112999110 -32.27 LOC112999141 28S ribosomal RNA 112999141 -32.27 LOC100500640 cell wall / vacuolar inhibitor of fructosidase 100500640 GLYMA_17G036400 -32.26 LOC112999144 28S ribosomal RNA 112999144 -32.26 LOC112999187 28S ribosomal RNA 112999187 -32.26 LOC121174429 28S ribosomal RNA 121174429 -32.25 LOC121174432 28S ribosomal RNA 121174432 -32.24 LOC112999138 28S ribosomal RNA 112999138 -32.19 LOC121174435 28S ribosomal RNA 121174435 -32.18 LOC112999109 28S ribosomal RNA 112999109 -32.17 LOC112999145 28S ribosomal RNA 112999145 -32.17 LOC112999146 28S ribosomal RNA 112999146 -32.16 LOC112999113 28S ribosomal RNA 112999113 -32.16 LOC112999120 28S ribosomal RNA 112999120 -32.15 LOC112999122 28S ribosomal RNA 112999122 -32.14 LOC112999106 28S ribosomal RNA 112999106 -32.14 LOC121174433 28S ribosomal RNA 121174433 -32.13 LOC112999171 28S ribosomal RNA 112999171 -32.13 LOC121174430 28S ribosomal RNA 121174430 -32.13 LOC112999151 28S ribosomal RNA 112999151 -32.12 LOC112999139 28S ribosomal RNA 112999139 -32.11 LOC112999212 28S ribosomal RNA 112999212 -32.10 LOC121174457 28S ribosomal RNA 121174457 -32.10 LOC112999186 28S ribosomal RNA 112999186 -32.09 LOC121173392 28S ribosomal RNA 121173392 -32.09 LOC112999165 28S ribosomal RNA 112999165 -32.09 LOC112999149 28S ribosomal RNA 112999149 -32.08 LOC112999152 28S ribosomal RNA 112999152 -32.08 LOC112999132 28S ribosomal RNA 112999132 -32.06 LOC100787564 protein NRT1/ PTR FAMILY 7.3 100787564 GLYMA_11G042000 -32.04 LOC112999127 28S ribosomal RNA 112999127 -32.04 LOC112999134 28S ribosomal RNA 112999134 -32.04 LOC121174459 28S ribosomal RNA 121174459 -32.03 LOC112999172 28S ribosomal RNA 112999172 -32.03 LOC112999147 28S ribosomal RNA 112999147 -32.03 LOC100527578 uncharacterized LOC100527578 100527578 GLYMA_18G005000 -32.02 LOC112999200 28S ribosomal RNA 112999200 -32.02 LOC121174428 28S ribosomal RNA 121174428 -32.00 LOC112999130 28S ribosomal RNA 112999130 -31.98 LOC121174458 28S ribosomal RNA 121174458 -31.96 LOC112999185 28S ribosomal RNA 112999185 -31.96 LOC121174460 28S ribosomal RNA 121174460 -31.95 LOC121174434 28S ribosomal RNA 121174434 -31.92 LOC112999162 28S ribosomal RNA 112999162 -31.90 LOC112999103 28S ribosomal RNA 112999103 -31.89 MYB75 MYB transcription factor MYB75 778039 GLYMA_14G062200 -31.87 LOC112999140 28S ribosomal RNA 112999140 -31.86 LOC121174431 28S ribosomal RNA 121174431 -31.83 LOC112999112 28S ribosomal RNA 112999112 -31.80 LOC121173393 28S ribosomal RNA 121173393 -31.76	Lower 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC100811103 C2 and GRAM domain-containing protein At5g50170 100811103 GLYMA_04G187900 -27.32 LOC100817914 C2 and GRAM domain-containing protein At5g50170 100817914 GLYMA_06G177800 -23.17 LOC100818430 heat stress transcription factor A-2 100818430 GLYMA_13G105700 -22.63 LOC100789945 DUF21 domain-containing protein At4g33700 100789945 GLYMA_15G062100 -22.50 LOC100777573 somatic embryogenesis receptor kinase 1 100777573 GLYMA_11G180700 -22.27 LOC100816718 expansin-A15 100816718 GLYMA_17G101400 -21.41 LOC100778060 heat stress transcription factor A-2 100778060 GLYMA_17G053700 -21.13 LOC100791989 low-temperature-induced 65 kDa protein 100791989 GLYMA_20G158500 -20.84 PIF3 bHLH transcription factor PIF3 100784724 GLYMA_19G222000 -20.49 LOC121172825 tripeptidyl-peptidase 2-like 121172825 GLYMA_09G137300v4 -20.42 LOC100778772 oxysterol-binding protein-related protein 4B 100778772 GLYMA_17G059900 -20.19 LOC100814293 E3 ubiquitin-protein ligase AIRP2 100814293 GLYMA_18G200100 -20.00 LOC102670183 protein ECERIFERUM 2 102670183 GLYMA_03G246600 -19.90 LOC100795663 uncharacterized LOC100795663 100795663 GLYMA_04G114600 -19.47 LOC100814402 putative surface protein SACOL0050 100814402 GLYMA_15G115000 -19.01 LOC100788448 pectin acetylesterase 10 100788448 GLYMA_19G224500 -18.58 LOC121172711 uncharacterized LOC121172711 121172711 -18.48 LOC100527578 uncharacterized LOC100527578 100527578 GLYMA_18G005000 -18.37 LOC100795995 trihelix transcription factor GTL1 100795995 GLYMA_03G246000 -18.27 LOC100797807 major latex allergen Hev b 5 100797807 GLYMA_12G159800 -18.26 LOC100794412 momilactone A synthase-like 100794412 GLYMA_03G113200 -18.15 LOC100807056 short-chain dehydrogenase TIC 32 B, chloroplastic 100807056 GLYMA_13G131400 -17.97 LOC100815072 F-box and associated interaction domain-containing protein 100815072 GLYMA_13G211000 -17.77 LOC100305612 RING finger and U-box domain-containing protein 100305612 GLYMA_02G291200 -17.50 LOC102666519 uncharacterized LOC102666519 102666519 -17.48 LOC100819917 uncharacterized LOC100819917 100819917 GLYMA_08G131300 -17.45 LOC100815555 B3 domain-containing transcription factor VRN1-like 100815555 GLYMA_11G124200 -17.42 LOC102670140 uncharacterized LOC102670140 102670140 -17.40 LOC100786967 organic cation/carnitine transporter 1 100786967 GLYMA_09G166400 -17.38 LOC100800380 protein EXORDIUM-like 2 100800380 GLYMA_02G208300 -17.32 LOC100813294 alpha-aminoadipic semialdehyde synthase 100813294 GLYMA_13G115500 -17.27 LOC100781124 GDSL esterase/lipase At2g03980 100781124 GLYMA_02G124000 -17.25 LOC100795385 uncharacterized LOC100795385 100795385 -17.25 HSP70 heat shock 70 kDa protein-like 100782173 GLYMA_17G072400 -17.22 PM1 late embryogenesis abundant group 4 protein PM1 547828 GLYMA_19G147200 -17.20 LOC100787950 putative E3 ubiquitin-protein ligase LIN-1 100787950 GLYMA_05G229600 -17.13 LOC102666390 putative disease resistance protein RGA3 102666390 GLYMA_09G020500 -17.02 FER2-1 ferritin 100787160 GLYMA_02G262500 -16.94 LOC100810660 probable plastidic glucose transporter 3 100810660 GLYMA_08G204500 -16.94 LOC100819588 S-adenosyl-L-methionine:benzoic acid/salicylic acid carboxyl methyltransferase 3 100819588 GLYMA_09G254200 -16.93 ICL isocitrate lyase 2 100782793 GLYMA_12G100500 -16.86 LOC100820122 vesicle-associated protein 2-1 100820122 GLYMA_17G146400 -16.85 LOC100526893 putative class I heat shock protein 100526893 GLYMA_07G200300 -16.82 HSF-30 heat stress transcription factor 30 100778558 GLYMA_14G096800 -16.79 LOC100797583 alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial 100797583 GLYMA_18G210500 -16.78 LOC100775798 protein G1-like7 100775798 GLYMA_11G165700 -16.74 LOC100803182 probable folate-biopterin transporter 7 100803182 GLYMA_15G134900 -16.71 LOC100820151 transcription factor PIF3 100820151 GLYMA_10G142600 -16.70 LOC102666485 putative disease resistance protein RGA4 102666485 GLYMA_09G265700 -16.69 LOC100783940 protein JINGUBANG 100783940 GLYMA_15G017700 -16.65 LOC102659696 PLASMODESMATA CALLOSE-BINDING PROTEIN 1 102659696 GLYMA_15G196900 -16.65 LOC100813376 NAC domain-containing protein 87 100813376 GLYMA_02G070600 -16.60 LOC102668642 uncharacterized LOC102668642 102668642 -16.57 LOC100797120 indole-3-acetic acid-amido synthetase GH3.6 100797120 GLYMA_13G284600 -16.56 LOC100813129 probable E3 ubiquitin-protein ligase RHA4A 100813129 GLYMA_13G002800 -16.47 LOC100814569 MLP-like protein 34 100814569 GLYMA_15G146400 -16.41 LOC102664686 uncharacterized LOC102664686 102664686 -16.38 LOC100790652 desiccation-related protein PCC13-62 100790652 GLYMA_15G138000 -16.36 STS stachyose synthase 100815922 GLYMA_19G217700 -16.30 LOC100783471 caffeoylshikimate esterase 100783471 GLYMA_03G214800 -16.27 LOC100795897 DUF21 domain-containing protein At4g33700 100795897 GLYMA_13G252800 -16.27 LOC100807954 beta carbonic anhydrase 5, chloroplastic 100807954 GLYMA_14G181400 -16.26 LOC102667285 uncharacterized LOC102667285 102667285 -16.25 GLYI-9 putative lactoylglutathione lyase 100784828 GLYMA_08G211100 -16.06 LOC102660057 myosin-binding protein 1 102660057 GLYMA_10G034200 -16.06 LOC100798655 uncharacterized LOC100798655 100798655 GLYMA_03G217700 -16.06 LOC100806075 low-temperature-induced 65 kDa protein 100806075 GLYMA_10G236000 -16.02 LOC100795299 retinol dehydrogenase 12-like 100795299 GLYMA_10G043700 -16.01 LOC100813848 cation/calcium exchanger 2 100813848 GLYMA_06G155200 -15.98 LOC100810787 probable glycerol-3-phosphate acyltransferase 2 100810787 GLYMA_14G167400 -15.97 SIG5B RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like 100812580 GLYMA_06G125700 -15.96 LOC100780206 aspartyl protease family protein At5g10770 100780206 GLYMA_09G017900 -15.89 LOC100790205 subtilisin-like protease SBT1.2 100790205 GLYMA_03G167600 -15.80 LOC778071 transcription factor MYB102 778071 GLYMA_13G247200 -15.78 LOC100783793 uncharacterized LOC100783793 100783793 GLYMA_09G010500 -15.74 LOC100787891 homeobox-leucine zipper protein MERISTEM L1 100787891 GLYMA_10G251300 -15.74 LOC100777344 organic cation/carnitine transporter 1 100777344 GLYMA_16G216500 -15.72 BG7S-2 basic 7S globulin 2 547485 GLYMA_19G236600 -15.70 LOC100806287 uncharacterized LOC100806287 100806287 GLYMA_19G214500 -15.69 LOC100800249 galactinol synthase 2 100800249 GLYMA_19G227800 -15.68 LOC100795190 receptor-like protein 6 100795190 GLYMA_14G173600 -15.68 LOC100808861 uncharacterized LOC100808861 100808861 GLYMA_08G239400 -15.67 LOC100794740 uncharacterized LOC100794740 100794740 GLYMA_17G140800 -15.67 LOC100782408 zinc finger protein ZAT5 100782408 GLYMA_11G192600 -15.67 LOC100782401 pectin acetylesterase 10 100782401 GLYMA_03G227600 -15.63 LOC100809189 stem-specific protein TSJT1 100809189 GLYMA_13G240300 -15.62 LOC100807123 homeobox-leucine zipper protein HAT22 100807123 GLYMA_17G157600 -15.59 LOC100806444 centromere-associated protein E 100806444 GLYMA_02G081300 -15.58 LOC100776854 probable serine/threonine-protein kinase At1g54610 100776854 GLYMA_10G222200 -15.55 LOC102670206 stemmadenine O-acetyltransferase 102670206 GLYMA_07G000700 -15.55 LOC100811246 alpha-aminoadipic semialdehyde synthase 100811246 GLYMA_17G044300 -15.49 SBP65 LEA protein 547879 GLYMA_13G291800 -15.47 LOC100816978 probable galactinol--sucrose galactosyltransferase 2 100816978 GLYMA_04G190000 -15.46 LOC100806109 F-box protein At2g26850 100806109 GLYMA_19G129600 -15.44 LOC100809776 transcription factor TCP14 100809776 GLYMA_17G099100 -15.43 LOC100817643 WEB family protein At5g55860 100817643 GLYMA_02G301400 -15.38 LOC100787622 SNF1-related protein kinase regulatory subunit gamma-like PV42a 100787622 GLYMA_13G365800 -15.35 LOC100500528 putative disease resistance protein 100500528 GLYMA_06G267400 -15.31 LOC100794700 putative amidase AmiD 100794700 GLYMA_08G006267v4 -15.27 PHO1-H8 PHO1 family protein 100802251 GLYMA_20G206900 -15.25	Lower 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC100777676 coleoptile phototropism protein 1 100777676 GLYMA_08G209000 -46.51 LOC100800635 GDSL esterase/lipase At5g45670-like 100800635 GLYMA_05G163400 -46.44 LOC547494 24 kDa seed maturation protein 547494 GLYMA_11G059100 -45.92 GASA26 gibberellin-regulated protein 26 100793143 GLYMA_17G092800 -45.41 LOC100527742 trypsin inhibitor 100527742 GLYMA_08G342300 -44.17 LOC100804226 uncharacterized LOC100804226 100804226 GLYMA_14G052000 -43.96 LOC100787995 momilactone A synthase 100787995 GLYMA_15G211300 -43.32 BG7S-2 basic 7S globulin 2 547485 GLYMA_19G236600 -43.25 LOC100794412 momilactone A synthase-like 100794412 GLYMA_03G113200 -43.00 LOC100527288 kunitz type trypsin inhibitor 100527288 GLYMA_16G212500 -42.31 LOC100789630 kunitz trypsin inhibitor 5 100789630 GLYMA_09G163900 -42.18 LOC102662439 glycine-rich cell wall structural protein 1-like 102662439 -40.16 LOC100499973 uncharacterized LOC100499973 100499973 GLYMA_01G034000 -39.75 LOC100789631 glycine-rich cell wall structural protein 100789631 GLYMA_09G188800 -39.45 SWEET31 sugar efflux transporter SWEET31 100777281 GLYMA_13G037900 -38.50 LOC100790111 7-deoxyloganetin glucosyltransferase 100790111 GLYMA_14G175400 -38.38 PGIP4 polygalacturonase inhibitor protein 548041 GLYMA_08G079100v4 -38.37 GASA27 gibberellin-regulated protein 27 100305602 GLYMA_17G237100 -38.04 LOC100777335 GDSL esterase/lipase family protein 100777335 GLYMA_08G120700 -37.97 LOC100802619 codeine O-demethylase 100802619 GLYMA_13G222100 -37.94 LOC100791557 expansin-like B1-like 100791557 GLYMA_17G151700 -37.92 LOC100798655 uncharacterized LOC100798655 100798655 GLYMA_03G217700 -37.87 LOC106795176 uncharacterized LOC106795176 106795176 -37.54 PM1 late embryogenesis abundant group 4 protein PM1 547828 GLYMA_19G147200 -37.39 LOC100814871 stem-specific protein TSJT1 100814871 GLYMA_12G150500 -36.91 LOC100779612 uncharacterized LOC100779612 100779612 GLYMA_14G016100 -36.17 LOC100860051 uncharacterized LOC100860051 100860051 GLYMA_14G051900 -36.17 LOC100790652 desiccation-related protein PCC13-62 100790652 GLYMA_15G138000 -35.84 LOC100793805 cucumisin 100793805 GLYMA_14G064600 -35.50 LOC547449 class III acidic endochitinase 547449 GLYMA_20G164700 -35.17 LOC102661637 uncharacterized LOC102661637 102661637 GLYMA_19G101500 -35.11 LOC100306134 kunitz family trypsin and protease inhibitor 100306134 GLYMA_16G212400 -35.09 LOC113000734 glycine-rich protein 5 113000734 GLYMA_20G206600 -35.08 LOC100802020 putative glutamine amidotransferase GAT1_2.1 100802020 GLYMA_18G294300 -35.03 LOC100817318 non-specific lipid-transfer protein 3-like 100817318 GLYMA_03G040400 -34.92 LOC100785689 SNF1-related protein kinase regulatory subunit gamma-like PV42a 100785689 GLYMA_15G007300 -34.68 LOC100800889 kunitz-type trypsin inhibitor KTI1-like 100800889 GLYMA_08G342100 -34.65 LOC100809384 glucose and ribitol dehydrogenase-like 100809384 GLYMA_07G258200 -34.60 LOC100796708 uncharacterized LOC100796708 100796708 GLYMA_19G093400 -34.56 LOC100818103 nitrate reductase [NADH] 2 100818103 GLYMA_14G164900 -34.46 LOC100792425 ABC transporter G family member 1 100792425 GLYMA_08G070700 -34.12 BG7S-1 basic 7S globulin 547908 GLYMA_03G239700 -34.09 LOC100784115 transcription factor bHLH71 100784115 GLYMA_08G271000 -33.84 LOC102665439 cytochrome c oxidase subunit 6b-2 102665439 GLYMA_11G040300 -33.78 PM25 seed maturation protein PM25 547535 GLYMA_20G147600 -33.68 LOC100799817 kunitz-type trypsin inhibitor KTI1-like 100799817 GLYMA_08G341800 -33.53 LOC100807221 probable aspartic proteinase GIP2 100807221 GLYMA_13G208000 -33.47 LOC100816718 expansin-A15 100816718 GLYMA_17G101400 -33.41 LOC100787622 SNF1-related protein kinase regulatory subunit gamma-like PV42a 100787622 GLYMA_13G365800 -33.12 LOC100796941 probable isoaspartyl peptidase/L-asparaginase 2 100796941 GLYMA_06G043000 -32.96 MYB73 MYB transcription factor MYB73 778179 GLYMA_06G303100 -32.76 LOC100500338 kunitz family trypsin and protease inhibitor 100500338 GLYMA_08G341600 -32.75 LOC100807289 uncharacterized LOC100807289 100807289 GLYMA_17G238900 -32.72 LOC100791509 cytochrome P450 89A2 100791509 GLYMA_07G220400 -32.61 LOC100499869 uncharacterized LOC100499869 100499869 GLYMA_05G169900 -32.36 LOC100788994 fatty acyl-CoA reductase 3 100788994 GLYMA_11G185100 -32.30 LOC100807151 uncharacterized LOC100807151 100807151 GLYMA_18G152800 -32.10 LOC100779237 oleosin Ara h 15.0101 100779237 GLYMA_06G078700 -32.07 LOC100808976 calcium-binding protein KIC 100808976 GLYMA_12G197900 -31.98 LOC100813910 uncharacterized LOC100813910 100813910 GLYMA_17G208200 -31.87 LOC100783267 MLP-like protein 423-like 100783267 GLYMA_02G032300 -31.74 LOC100527212 uncharacterized LOC100527212 100527212 GLYMA_14G073200 -31.72 LOC100801057 glycine-rich protein 5 100801057 GLYMA_08G319200 -31.70 PGIP polygalacturonase inhibitor protein 548022 GLYMA_08G079100 -31.62 NIP1-8 aquaporin NIP1-8 100812577 GLYMA_13G224900 -31.57 LOC547496 metallothionein-II protein 547496 GLYMA_18G157800 -31.57 LOC100779120 cytochrome P450 71D10 100779120 GLYMA_08G109900 -31.44 LOC100801504 uncharacterized LOC100801504 100801504 GLYMA_11G022100 -31.28 LOC100819691 GDSL esterase/lipase At5g45950 100819691 GLYMA_13G233600 -30.89 LOC100783542 transcription factor bHLH71-like 100783542 GLYMA_01G095500 -30.88 GASA22 gibberellin-regulated protein 22 100500113 GLYMA_14G087200 -30.68 LOC100804407 uncharacterized LOC100804407 100804407 GLYMA_07G171100 -30.66 LOC106794093 linoleate 13S-lipoxygenase 2-1, chloroplastic 106794093 GLYMA_20G054000 -30.58 LOC100808990 hydroxysteroid 11-beta-dehydrogenase 1-like protein-like 100808990 GLYMA_05G203300 -30.55 LOC100527731 uncharacterized LOC100527731 100527731 GLYMA_07G243600 -30.54 LOC102666201 leucine-rich repeat extensin-like protein 3 102666201 GLYMA_02G014900 -30.49 LOC100803175 uncharacterized LOC100803175 100803175 GLYMA_15G111400 -30.43 LOC100812344 GDSL esterase/lipase LTL1 100812344 GLYMA_03G252500 -30.26 LOC100799842 uncharacterized LOC100799842 100799842 GLYMA_09G123800 -30.20 LOC100306237 cysteine-rich and transmembrane domain-containing protein WIH2 100306237 GLYMA_08G172300 -30.16 LOC100777968 O-acyltransferase WSD1-like 100777968 GLYMA_19G046000 -30.12 PGMPM18 35 kDa seed maturation protein 547500 GLYMA_03G189200 -30.06 AG1 arginase 547994 GLYMA_03G028000 -29.97 LOC100775450 GDSL esterase/lipase At5g33370 100775450 GLYMA_19G250167v4 -29.97 LOC100777573 somatic embryogenesis receptor kinase 1 100777573 GLYMA_11G180700 -29.95 LOC732637 Lea protein 732637 GLYMA_17G040800 -29.95 LOC100785905 probable protein phosphatase 2C 8 100785905 GLYMA_01G225100 -29.95 SWEET33 sugar efflux transporter SWEET33 102666983 GLYMA_13G169700 -29.84 KTI3 Kunitz trypsin inhibitor 547831 GLYMA_08G341500 -29.83 LOC100809248 uncharacterized LOC100809248 100809248 GLYMA_02G060900 -29.78 FAD2-1A omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 547814 GLYMA_10G278000 -29.55 LOC100816135 ABC transporter G family member 9 100816135 GLYMA_13G279800 -29.38 LOC100816141 stem-specific protein TSJT1 100816141 GLYMA_13G242100 -29.34 P34 P34 probable thiol protease 548062 GLYMA_08G116300 -29.30 LOC100306553 signaling peptide TAXIMIN 1 100306553 GLYMA_13G231900 -29.29 LOC100800816 transcription factor HEC1 100800816 GLYMA_05G094900 -29.15 LOC547765 zinc finger homeodomain protein SZF-HD1 547765 GLYMA_09G170500 -29.12 LOC100817996 endo-1,4-beta-glucanase 100817996 GLYMA_02G269400 -29.07 SWEET36 sugar efflux transporter SWEET36 100799083 GLYMA_14G120300 -29.04 LOC100775399 uncharacterized LOC100775399 100775399 GLYMA_02G255200 -29.04	Lower 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC100305493 cytidine/deoxycytidylate deaminase family protein 100305493 GLYMA_15G186100 -41.78 GLYI-20 putative lactoylglutathione lyase 100305695 GLYMA_15G009500 -39.43 LOC102669531 uncharacterized LOC102669531 102669531 -36.58 LOC100527208 uncharacterized LOC100527208 100527208 GLYMA_15G218900 -36.38 LOC100795760 chaperone protein dnaJ 11, chloroplastic 100795760 GLYMA_16G127700 -35.98 LOC100809295 non-symbiotic hemoglobin 1-like 100809295 GLYMA_11G121700 -35.05 LOC100499973 uncharacterized LOC100499973 100499973 GLYMA_01G034000 -33.98 LOC100499831 senescence-associated protein 100499831 GLYMA_11G082300 -33.77 LOC100813910 uncharacterized LOC100813910 100813910 GLYMA_17G208200 -33.53 LOC100807158 probable serine/threonine-protein kinase PBL28 100807158 GLYMA_03G253600 -33.48 LOC100795959 uncharacterized sugar kinase slr0537 100795959 GLYMA_17G251900 -33.30 LOC100305968 rhodanese-like domain-containing protein 100305968 GLYMA_01G161500 -33.14 LOC100812431 beta-glucosidase 12 100812431 GLYMA_15G031400 -32.98 LOC547820 31 kDa protein 547820 GLYMA_08G200100 -32.93 LOC106794123 cytochrome P450 CYP82D47 106794123 GLYMA_01G181800 -32.86 LOC100800655 uncharacterized LOC100800655 100800655 -32.80 LOC102668807 GDSL esterase/lipase EXL3 102668807 GLYMA_14G220600 -32.28 CEL7 alpha family endo-beta-1,4-glucanase 100777718 GLYMA_02G016400 -32.26 LOC100804226 uncharacterized LOC100804226 100804226 GLYMA_14G052000 -32.21 LOC100808818 putative dynein light chain type 1 100808818 GLYMA_13G357500 -32.21 LOC100810156 uncharacterized protein DDB_G0271670 100810156 GLYMA_09G043300 -31.97 LOC100779411 uncharacterized LOC100779411 100779411 GLYMA_13G179200 -31.91 LOC100305943 OXS3-like protein 100305943 GLYMA_11G208700 -31.72 LOC100817528 zinc finger protein CONSTANS-LIKE 16 100817528 GLYMA_20G115600 -31.68 LOC100816615 light-regulated protein-like 100816615 GLYMA_19G102400 -31.51 LOC100812823 beta-D-xylosidase 1 100812823 GLYMA_09G038600 -31.46 LOC100782644 branched-chain-amino-acid aminotransferase 2, chloroplastic-like 100782644 GLYMA_06G050100 -31.45 LOC100818776 branched-chain-amino-acid aminotransferase 2, chloroplastic 100818776 GLYMA_04G049200 -31.33 LOC102661574 uncharacterized LOC102661574 102661574 GLYMA_18G107200 -31.29 LOC100783037 vicianin hydrolase 100783037 GLYMA_15G271000 -31.20 LOC100782109 uncharacterized LOC100782109 100782109 GLYMA_13G165000 -31.17 LOC100776765 cell wall-associated protein BIIDXI-like 100776765 GLYMA_14G126200 -31.14 LOC100811937 subtilisin-like protease Glyma18g48580 100811937 GLYMA_18G249800 -31.07 LOC100788098 AT-hook motif nuclear-localized protein 17 100788098 GLYMA_04G091600 -30.64 LOC100779857 probable acyl-activating enzyme 5, peroxisomal 100779857 GLYMA_02G239500 -30.63 LOC100803860 PDDEXK-like family protein 100803860 GLYMA_13G238500 -30.44 LOC100786017 protein SRG1 100786017 GLYMA_13G263800 -30.42 LOC100802655 ethylene-responsive transcription factor 12 100802655 GLYMA_15G077000 -30.39 LOC100500033 alpha-amylase inhibitor/lipid transfer/seed storage family protein 100500033 GLYMA_17G140300 -30.31 LOC100800816 transcription factor HEC1 100800816 GLYMA_05G094900 -30.02 WRKY8 WRKY transcription factor 8 100127368 GLYMA_19G217000 -29.98 PRX4 peroxidase 547550 GLYMA_16G164200 -29.86 LOC100789144 endoglucanase 17 100789144 GLYMA_10G017000 -29.86 LOC100813859 uncharacterized LOC100813859 100813859 GLYMA_07G226600 -29.73 LOC100800379 uncharacterized LOC100800379 100800379 GLYMA_17G015900 -29.59 LOC121175176 nodulin-related protein 1-like 121175176 GLYMA_07G226633v4 -29.55 LOC100815185 non-specific lipid-transfer protein 3-like 100815185 GLYMA_03G040100 -29.34 PRP alpha-amylase inhibitor/lipid transfer/seed storage family protein 100499693 -29.21 LOC100527047 uncharacterized LOC100527047 100527047 GLYMA_17G154151v4 -29.18 LOC100812308 transcription factor HEC2 100812308 GLYMA_17G173100 -29.18 LOC100817157 probable xyloglucan endotransglucosylase/hydrolase protein 32 100817157 GLYMA_19G184900 -29.15 LOC100500479 uncharacterized LOC100500479 100500479 GLYMA_20G008400 -28.82 LOC100794288 thiamine thiazole synthase 2, chloroplastic 100794288 GLYMA_20G142000 -28.75 LOC100793454 uncharacterized LOC100793454 100793454 GLYMA_07G154700 -28.73 LOC100306161 OS3-like protein 100306161 GLYMA_18G045200 -28.71 LOC102664934 uncharacterized LOC102664934 102664934 -28.65 VSPA 28 kDa protein 547821 GLYMA_07G014500 -28.62 LOC100805689 cytochrome P450 711A1 100805689 GLYMA_17G227500 -28.61 GASA14 gibberellin-regulated protein 14 100500003 GLYMA_09G238300 -28.58 LOC100799813 chlorophyll a-b binding protein of LHCII type 1 100799813 GLYMA_16G165200 -28.25 LOC100779602 galactose mutarotase 100779602 GLYMA_13G064200 -28.14 LOC100798036 uncharacterized LOC100798036 100798036 GLYMA_07G134500 -27.81 LOC100798318 asparagine synthetase [glutamine-hydrolyzing] 2 100798318 GLYMA_11G171400 -27.69 LOC100817704 protein RICE SALT SENSITIVE 3 100817704 GLYMA_04G041700 -27.69 LOC100807366 uncharacterized LOC100807366 100807366 GLYMA_12G212200 -27.67 LOC100802662 endoglucanase 8 100802662 GLYMA_08G043600 -27.64 LOC100792085 spermidine synthase-like 100792085 GLYMA_17G092400 -27.45 LOC100809424 probable esterase KAI2 100809424 GLYMA_01G191200 -27.39 LOC100816068 uncharacterized LOC100816068 100816068 GLYMA_10G175200 -27.38 LOC100814924 zinc-finger homeodomain protein 11 100814924 GLYMA_07G230200 -27.35 LOC121173048 uncharacterized LOC121173048 121173048 -27.33 LOC100804372 endoglucanase 8 100804372 GLYMA_05G236400 -27.33 LOC100809917 uncharacterized LOC100809917 100809917 GLYMA_07G258100 -27.33 LOC100526906 uncharacterized LOC100526906 100526906 GLYMA_05G225900 -27.28 LOC102660463 homeobox protein knotted-1-like 1 102660463 GLYMA_20G097500 -27.25 LOC100804784 chaperone protein dnaJ 8, chloroplastic-like 100804784 GLYMA_08G220000 -27.24 LOC100793239 uncharacterized LOC100793239 100793239 GLYMA_05G160700 -27.19 LOC100803791 transcription repressor OFP13 100803791 GLYMA_03G200100 -27.16 LOC100306089 uncharacterized LOC100306089 100306089 GLYMA_02G286900 -27.13 LOC100795224 uncharacterized LOC100795224 100795224 GLYMA_08G320400 -27.12 LOC106797220 uncharacterized LOC106797220 106797220 -27.06 LOC100799842 uncharacterized LOC100799842 100799842 GLYMA_09G123800 -27.03 LOC100789634 PQ-loop repeat-containing protein 100789634 GLYMA_02G059500 -27.02 GASA32 gibberellin-regulated protein 32 100787539 GLYMA_18G259400 -26.96 LOC100796698 putative xyloglucan endotransglucosylase/hydrolase 100796698 GLYMA_03G184500 -26.91 LOC100786541 uncharacterized LOC100786541 100786541 GLYMA_06G283500 -26.86 LOC778095 dof zinc finger protein DOF3.4 778095 GLYMA_02G062700 -26.81 COL2B zinc finger protein CONSTANS-LIKE 2 100301886 GLYMA_18G278100 -26.75 LOC100791755 protein TORNADO 2 100791755 GLYMA_09G205400 -26.74 LOC100803730 homeobox protein knotted-1-like 6 100803730 GLYMA_08G284300 -26.70 LOC100813385 protein NRT1/ PTR FAMILY 5.2 100813385 GLYMA_10G005300 -26.70 LOC121173402 uncharacterized LOC121173402 121173402 -26.69 LOC102665635 BON1-associated protein 1 102665635 GLYMA_07G076200 -26.69 LOC100789148 membrane protein of ER body 2 100789148 GLYMA_03G084200 -26.66 LOC100790725 macrophage migration inhibitory factor homolog 100790725 GLYMA_18G207400 -26.65 CYP83E8 cytochrome P450 83B1-like 100796528 GLYMA_03G029900 -26.63 LOC100816168 glycine-rich cell wall structural protein 1.0 100816168 GLYMA_08G271600 -26.59 RPSQ LRR receptor kinase-like protein 100816072 GLYMA_03G117600 -26.54 LOC100527399 uncharacterized LOC100527399 100527399 GLYMA_08G032800 -26.52 LOC100787732 ethylene-response factor C3 100787732 GLYMA_19G248900 -26.51