Coexpression PCA detail

ppo 

Platform: ppo-r.c3-0

PC1	PC2	PC3	PC4	PC5	PC6	PC7	PC8	PC9	PC10
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Loading 1 SRP071226 RNAseq of xylem tissue of transgenic and wildtype Populus trichocarpa (NSF Plant Genome Research Program Project 0922391) loading run annotation attributes 2.4742 SRR3207725 gene perturbation type knockdown of LIM1 | batch of trees NSF2 2.3499 SRR3207782 gene perturbation type knockdown of LIM1,LIM2 | batch of trees NSF2 2.3394 SRR3207740 gene perturbation type knockdown of LIM2 | batch of trees NSF2 -2.4168 SRR3207855 gene perturbation type knockdown of C3H3, C4H1 and C4H2 | batch of trees NSF3 -2.4218 SRR3207818 gene perturbation type knockdown of C3H3 | batch of trees NSF3 -2.9639 SRR3207918 gene perturbation type wild type control | batch of trees NSF4 2 SRP103219 Differential gene expression analysis of drought responsive sense and antisense genes in Populus loading run annotation attributes 0.8762 SRR5423543 source_name drought treated_long-term_mature leaves | type drought treated | drought treatment long-term | tissue mature leaves | molecule subtype mRNA 0.7918 SRR5423435 source_name drought treated_short-term_mature leaves | type drought treated | drought treatment short-term | tissue mature leaves | molecule subtype total RNA 0.7891 SRR5423426 source_name drought treated_short-term_mature leaves | type drought treated | drought treatment short-term | tissue mature leaves | molecule subtype total RNA -1.9313 SRR5423555 source_name control_long-term_root | type control | drought treatment long-term | tissue root | molecule subtype mRNA -1.9851 SRR5423590 source_name drought treated_long-term_root | type drought treated | drought treatment long-term | tissue root | molecule subtype mRNA -2.0447 SRR5423572 source_name control_long-term_root | type control | drought treatment long-term | tissue root | molecule subtype mRNA 3 SRP201788 A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa [RNA-Seq] loading run annotation attributes 2.3889 SRR9668903 1.8274 SRR9668908 1.4956 SRR9668923 -1.4092 SRR9668925 -1.5202 SRR9668916 -1.6444 SRR9668917 4 SRP035471 Ptr-miR397a is a negative regulator of laccase genes affecting lignin content in Populus trichocarpa loading run annotation attributes 1.4178 SRR1121298 genotype over expression miR397a 1.0865 SRR1121303 genotype wild type 1.0108 SRR1121301 genotype wild type -1.2097 SRR1121292 genotype over expression miR397a -1.2396 SRR1121295 genotype over expression miR397a -1.5173 SRR1121302 genotype wild type 5 SRP028843 SND1 Transcription Factor-Directed Quantitative Functional Hierarchical Genetic Regulatory Network in Wood Formation in Populus trichocarpa loading run annotation attributes 1.1944 SRR952902 transfection time 25 hours | overexpressed gene PtrSND1-B1+sGFP 1.0801 SRR952903 transfection time 25 hours | overexpressed gene PtrSND1-B1+sGFP 1.0412 SRR952893 transfection time 25 hours | overexpressed gene sGFP (control) -0.791 SRR952889 transfection time 12 hours | overexpressed gene sGFP (control) -0.8535 SRR952890 transfection time 12 hours | overexpressed gene sGFP (control) -1.5157 SRR952892 transfection time 25 hours | overexpressed gene sGFP (control) 6 SRP074300 RNA-seq of major tissues and xylem cell types of Populus trichocarpa loading run annotation attributes 0.5593 SRR3473006 source_name Xylem fiber cells | tissue Xylem | cell type Fiber cell 0.5405 SRR3473011 source_name Xylem vessel cells | tissue Xylem | cell type Vessel cell 0.509 SRR3473008 source_name Xylem fiber cells | tissue Xylem | cell type Fiber cell -0.5018 SRR3473002 source_name Primary root | tissue Primary root -0.635 SRR3472991 source_name Shoot tip | tissue Shoot tip -0.7927 SRR3473003 source_name Stem differentiating xylem | tissue Stem differentiating xylem 7 ERP021848 High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 loading run annotation attributes 1.1239 ERR1864426 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102882418 | INSDC last update 2017-03-01T23:45:20Z | Submitter Id E-MTAB-5540:Leaf-short-term-cold-replicate-1 | organism part vascular leaf | sample name E-MTAB-5540:Leaf-short-term-cold-replicate-1 1.0954 ERR1864427 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102883168 | INSDC last update 2017-03-01T23:45:20Z | Submitter Id E-MTAB-5540:Leaf-short-term-cold-replicate-2 | organism part vascular leaf | sample name E-MTAB-5540:Leaf-short-term-cold-replicate-2 0.9813 ERR1864428 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102883918 | INSDC last update 2017-03-01T23:45:20Z | Submitter Id E-MTAB-5540:Leaf-short-term-cold-replicate-3 | organism part vascular leaf | sample name E-MTAB-5540:Leaf-short-term-cold-replicate-3 -0.7337 ERR1864478 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102921418 | INSDC last update 2017-03-01T23:45:21Z | Submitter Id E-MTAB-5540:Stem-xylem-prolonged-salt-replicate-2 | organism part stem xylem | sample name E-MTAB-5540:Stem-xylem-prolonged-salt-replicate-2 -0.7508 ERR1864450 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102900418 | INSDC last update 2017-03-01T23:45:21Z | Submitter Id E-MTAB-5540:Root-prolonged-salt-replicate-1 | organism part root | sample name E-MTAB-5540:Root-prolonged-salt-replicate-1 -0.781 ERR1864458 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102906418 | INSDC last update 2017-03-01T23:45:21Z | Submitter Id E-MTAB-5540:Root-short-term-drought-replicate-3 | organism part root | sample name E-MTAB-5540:Root-short-term-drought-replicate-3 8 SRP072040 RNAseq of drought treated Populus trichocarpa loading run annotation attributes 0.4776 SRR3241527 days after drought treatment 0 day 0.2912 SRR3241536 days after drought treatment 7 day 0.2214 SRR3241538 days after drought treatment 7 day -0.1989 SRR3241533 days after drought treatment 5 day -0.2298 SRR3241537 days after drought treatment 7 day -0.6562 SRR3241532 days after drought treatment 5 day 9 SRP271234 RNAseq of transfected protoplasts of Populus trichocarpa loading run annotation attributes 0.4218 SRR12192594 transfected genes PtrMYB092 0.4177 SRR12192595 transfected genes PtrMYB092 0.2444 SRR12192589 transfected genes PtrHSFB3-1 -0.2037 SRR12192593 transfected genes PtrMYB092 -0.6548 SRR12192579 transfected genes GFP -0.6548 SRR12192578 transfected genes GFP 10 SRP072680 Populus trichocarpa Transcriptome or Gene expression loading run annotation attributes 0.5439 SRR3317474 isolate tree4 | tissue xylem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95635 0.2861 SRR3317208 isolate tree3 | tissue xylem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95633 0.1791 SRR3317482 isolate tree6 | tissue phloem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95638 -0.2731 SRR3317483 isolate tree6 | tissue xylem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95639 -0.3107 SRR3317181 isolate tree1 | tissue phloem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95628 -0.4803 SRR3317201 isolate tree2 | tissue phloem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95630	Loading 1 ERP021848 High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 loading run annotation attributes 0.7207 ERR1864431 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102886168 | INSDC last update 2017-03-01T23:45:20Z | Submitter Id E-MTAB-5540:Leaf-short-term-drought-replicate-3 | organism part vascular leaf | sample name E-MTAB-5540:Leaf-short-term-drought-replicate-3 0.7022 ERR1864430 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102885418 | INSDC last update 2017-03-01T23:45:20Z | Submitter Id E-MTAB-5540:Leaf-short-term-drought-replicate-2 | organism part vascular leaf | sample name E-MTAB-5540:Leaf-short-term-drought-replicate-2 0.6868 ERR1864435 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102889168 | INSDC last update 2017-03-01T23:45:20Z | Submitter Id E-MTAB-5540:Leaf-short-term-salt-replicate-1 | organism part vascular leaf | sample name E-MTAB-5540:Leaf-short-term-salt-replicate-1 -0.5688 ERR1864481 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102923668 | INSDC last update 2017-03-01T23:45:22Z | Submitter Id E-MTAB-5540:Stem-xylem-short-term-cold-replicate-2 | organism part stem xylem | sample name E-MTAB-5540:Stem-xylem-short-term-cold-replicate-2 -0.5953 ERR1864482 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102924418 | INSDC last update 2017-03-01T23:45:22Z | Submitter Id E-MTAB-5540:Stem-xylem-short-term-cold-replicate-3 | organism part stem xylem | sample name E-MTAB-5540:Stem-xylem-short-term-cold-replicate-3 -0.6049 ERR1864480 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102922918 | INSDC last update 2017-03-01T23:45:22Z | Submitter Id E-MTAB-5540:Stem-xylem-short-term-cold-replicate-1 | organism part stem xylem | sample name E-MTAB-5540:Stem-xylem-short-term-cold-replicate-1 2 SRP074300 RNA-seq of major tissues and xylem cell types of Populus trichocarpa loading run annotation attributes 0.6016 SRR3472994 source_name Leaf | tissue Leaf 0.5977 SRR3472995 source_name Leaf | tissue Leaf 0.5142 SRR3472996 source_name Leaf | tissue Leaf -0.4321 SRR3473004 source_name Stem differentiating xylem | tissue Stem differentiating xylem -0.4633 SRR3473003 source_name Stem differentiating xylem | tissue Stem differentiating xylem -0.6042 SRR3473005 source_name Stem differentiating xylem | tissue Stem differentiating xylem 3 SRP071226 RNAseq of xylem tissue of transgenic and wildtype Populus trichocarpa (NSF Plant Genome Research Program Project 0922391) loading run annotation attributes 0.7141 SRR3208011 gene perturbation type knockdown of 4CL5 | batch of trees NSF6 0.7107 SRR3207879 gene perturbation type knockdown of C4H1 | batch of trees NSF4 0.6811 SRR3207972 gene perturbation type knockdown of HCT1,HCT6 | batch of trees NSF5 -0.5886 SRR3207742 gene perturbation type knockdown of LIM2 | batch of trees NSF2 -0.5911 SRR3207732 gene perturbation type knockdown of LIM1 | batch of trees NSF2 -0.5953 SRR3207778 gene perturbation type knockdown of LIM1,LIM2 | batch of trees NSF2 4 SRP103219 Differential gene expression analysis of drought responsive sense and antisense genes in Populus loading run annotation attributes 0.4718 SRR5423422 source_name drought treated_short-term_mature leaves | type drought treated | drought treatment short-term | tissue mature leaves | molecule subtype total RNA 0.4681 SRR5423423 source_name drought treated_short-term_mature leaves | type drought treated | drought treatment short-term | tissue mature leaves | molecule subtype total RNA 0.4669 SRR5423425 source_name drought treated_short-term_mature leaves | type drought treated | drought treatment short-term | tissue mature leaves | molecule subtype total RNA -0.5743 SRR5423564 source_name control_long-term_root | type control | drought treatment long-term | tissue root | molecule subtype mRNA -0.5747 SRR5423565 source_name control_long-term_root | type control | drought treatment long-term | tissue root | molecule subtype mRNA -0.5764 SRR5423567 source_name control_long-term_root | type control | drought treatment long-term | tissue root | molecule subtype mRNA 5 SRP072040 RNAseq of drought treated Populus trichocarpa loading run annotation attributes 0.4999 SRR3241537 days after drought treatment 7 day 0.4001 SRR3241535 days after drought treatment 7 day 0.3949 SRR3241538 days after drought treatment 7 day -0.2872 SRR3241530 days after drought treatment 0 day -0.4806 SRR3241529 days after drought treatment 0 day -0.5607 SRR3241528 days after drought treatment 0 day 6 SRP201788 A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa [RNA-Seq] loading run annotation attributes 0.5148 SRR9668929 0.5064 SRR9668920 0.4419 SRR9668930 -0.3203 SRR9321774 -0.3591 SRR9668898 -0.5048 SRR9668903 7 SRP072680 Populus trichocarpa Transcriptome or Gene expression loading run annotation attributes 0.2458 SRR3317473 isolate tree4 | tissue phloem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95634 0.2378 SRR3317476 isolate tree5 | tissue phloem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95636 0.1209 SRR3317207 isolate tree3 | tissue phloem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95632 -0.1994 SRR3317189 isolate tree1 | tissue xylem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95629 -0.2722 SRR3317208 isolate tree3 | tissue xylem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95633 -0.2823 SRR3317480 isolate tree5 | tissue xylem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95637 8 SRP035471 Ptr-miR397a is a negative regulator of laccase genes affecting lignin content in Populus trichocarpa loading run annotation attributes 0.1438 SRR1121292 genotype over expression miR397a 0.1139 SRR1121297 genotype over expression miR397a 0.0753 SRR1121295 genotype over expression miR397a -0.2225 SRR1121303 genotype wild type -0.2292 SRR1121299 genotype over expression miR397a -0.2378 SRR1121301 genotype wild type 9 SRP028843 SND1 Transcription Factor-Directed Quantitative Functional Hierarchical Genetic Regulatory Network in Wood Formation in Populus trichocarpa loading run annotation attributes 0.4592 SRR952892 transfection time 25 hours | overexpressed gene sGFP (control) 0.1934 SRR952889 transfection time 12 hours | overexpressed gene sGFP (control) 0.1533 SRR952890 transfection time 12 hours | overexpressed gene sGFP (control) -0.1171 SRR952899 transfection time 12 hours | overexpressed gene PtrSND1-B1+sGFP -0.166 SRR952886 transfection time 7 hours | overexpressed gene sGFP (control) -0.1728 SRR952895 transfection time 7 hours | overexpressed gene PtrSND1-B1+sGFP 10 SRP271234 RNAseq of transfected protoplasts of Populus trichocarpa loading run annotation attributes 0.1012 SRR12192586 transfected genes PtrHSFB3-1 0.0976 SRR12192587 transfected genes PtrHSFB3-1 0.0929 SRR12192581 transfected genes GFP -0.1064 SRR12192590 transfected genes PtrMYB092 -0.1293 SRR12192595 transfected genes PtrMYB092 -0.1308 SRR12192594 transfected genes PtrMYB092	Loading 1 SRP071226 RNAseq of xylem tissue of transgenic and wildtype Populus trichocarpa (NSF Plant Genome Research Program Project 0922391) loading run annotation attributes 0.5493 SRR3208017 gene perturbation type knockdown of 4CL3,4CL5 | batch of trees NSF6 0.5416 SRR3207748 gene perturbation type knockdown of MYB167 | batch of trees NSF2 0.5325 SRR3207695 gene perturbation type knockdown of PAL3 | batch of trees NSF1 -0.5899 SRR3207795 gene perturbation type knockdown of PAL1,PAL3 | batch of trees NSF2 -0.6116 SRR3207801 gene perturbation type knockdown of PAL1,PAL3 | batch of trees NSF2 -0.6401 SRR3207796 gene perturbation type knockdown of PAL1,PAL3 | batch of trees NSF2 2 SRP074300 RNA-seq of major tissues and xylem cell types of Populus trichocarpa loading run annotation attributes 0.5198 SRR3473000 source_name Primary root | tissue Primary root 0.516 SRR3473001 source_name Primary root | tissue Primary root 0.4744 SRR3473002 source_name Primary root | tissue Primary root -0.4619 SRR3472995 source_name Leaf | tissue Leaf -0.506 SRR3472991 source_name Shoot tip | tissue Shoot tip -0.5135 SRR3472996 source_name Leaf | tissue Leaf 3 SRP103219 Differential gene expression analysis of drought responsive sense and antisense genes in Populus loading run annotation attributes 0.8019 SRR5423577 source_name drought treated_long-term_root | type drought treated | drought treatment long-term | tissue root | molecule subtype mRNA 0.8019 SRR5423580 source_name drought treated_long-term_root | type drought treated | drought treatment long-term | tissue root | molecule subtype mRNA 0.8019 SRR5423582 source_name drought treated_long-term_root | type drought treated | drought treatment long-term | tissue root | molecule subtype mRNA -0.4968 SRR5423321 source_name control_short-term_apex | type control | drought treatment short-term | tissue apex | molecule subtype total RNA -0.4976 SRR5423304 source_name control_short-term_apex | type control | drought treatment short-term | tissue apex | molecule subtype total RNA -0.4978 SRR5423315 source_name control_short-term_apex | type control | drought treatment short-term | tissue apex | molecule subtype total RNA 4 SRP201788 A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa [RNA-Seq] loading run annotation attributes 0.5158 SRR9668903 0.4412 SRR9668908 0.3385 SRR9668919 -0.3275 SRR9668925 -0.3988 SRR9668916 -0.486 SRR9668917 5 SRP072040 RNAseq of drought treated Populus trichocarpa loading run annotation attributes 0.3483 SRR3241538 days after drought treatment 7 day 0.3189 SRR3241535 days after drought treatment 7 day 0.2659 SRR3241531 days after drought treatment 5 day -0.3008 SRR3241530 days after drought treatment 0 day -0.3482 SRR3241529 days after drought treatment 0 day -0.4468 SRR3241528 days after drought treatment 0 day 6 SRP035471 Ptr-miR397a is a negative regulator of laccase genes affecting lignin content in Populus trichocarpa loading run annotation attributes 0.4405 SRR1121298 genotype over expression miR397a 0.1404 SRR1121303 genotype wild type 0.1286 SRR1121297 genotype over expression miR397a -0.1888 SRR1121292 genotype over expression miR397a -0.3527 SRR1121295 genotype over expression miR397a -0.4289 SRR1121302 genotype wild type 7 ERP021848 High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 loading run annotation attributes 0.537 ERR1864456 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102904918 | INSDC last update 2017-03-01T23:45:21Z | Submitter Id E-MTAB-5540:Root-short-term-drought-replicate-1 | organism part root | sample name E-MTAB-5540:Root-short-term-drought-replicate-1 0.4825 ERR1864445 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102896668 | INSDC last update 2017-03-01T23:45:20Z | Submitter Id E-MTAB-5540:Root-prolonged-drought-replicate-2 | organism part root | sample name E-MTAB-5540:Root-prolonged-drought-replicate-2 0.4589 ERR1864446 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102897418 | INSDC last update 2017-03-01T23:45:20Z | Submitter Id E-MTAB-5540:Root-prolonged-drought-replicate-3 | organism part root | sample name E-MTAB-5540:Root-prolonged-drought-replicate-3 -0.4021 ERR1864411 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102871168 | INSDC last update 2017-03-01T23:45:19Z | Submitter Id E-MTAB-5540:Leaf-control-untreated-replicate-1 | organism part vascular leaf | sample name E-MTAB-5540:Leaf-control-untreated-replicate-1 -0.4082 ERR1864414 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102873418 | INSDC last update 2017-03-01T23:45:19Z | Submitter Id E-MTAB-5540:Leaf-prolonged-cold-replicate-1 | organism part vascular leaf | sample name E-MTAB-5540:Leaf-prolonged-cold-replicate-1 -0.4193 ERR1864413 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102872668 | INSDC last update 2017-03-01T23:45:19Z | Submitter Id E-MTAB-5540:Leaf-control-untreated-replicate-3 | organism part vascular leaf | sample name E-MTAB-5540:Leaf-control-untreated-replicate-3 8 SRP072680 Populus trichocarpa Transcriptome or Gene expression loading run annotation attributes 0.2594 SRR3317476 isolate tree5 | tissue phloem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95636 0.2298 SRR3317474 isolate tree4 | tissue xylem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95635 0.0677 SRR3317473 isolate tree4 | tissue phloem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95634 -0.085 SRR3317482 isolate tree6 | tissue phloem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95638 -0.1138 SRR3317181 isolate tree1 | tissue phloem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95628 -0.2568 SRR3317483 isolate tree6 | tissue xylem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95639 9 SRP028843 SND1 Transcription Factor-Directed Quantitative Functional Hierarchical Genetic Regulatory Network in Wood Formation in Populus trichocarpa loading run annotation attributes 0.2303 SRR952902 transfection time 25 hours | overexpressed gene PtrSND1-B1+sGFP 0.2191 SRR952903 transfection time 25 hours | overexpressed gene PtrSND1-B1+sGFP 0.2136 SRR952893 transfection time 25 hours | overexpressed gene sGFP (control) -0.1492 SRR952888 transfection time 7 hours | overexpressed gene sGFP (control) -0.1539 SRR952896 transfection time 7 hours | overexpressed gene PtrSND1-B1+sGFP -0.2538 SRR952897 transfection time 7 hours | overexpressed gene PtrSND1-B1+sGFP 10 SRP271234 RNAseq of transfected protoplasts of Populus trichocarpa loading run annotation attributes 0.101 SRR12192585 transfected genes PtrHSFB3-1 0.1003 SRR12192584 transfected genes PtrHSFB3-1 0.0909 SRR12192582 transfected genes GFP -0.0457 SRR12192594 transfected genes PtrMYB092 -0.0657 SRR12192592 transfected genes PtrMYB092 -0.0668 SRR12192593 transfected genes PtrMYB092	Loading 1 SRP071226 RNAseq of xylem tissue of transgenic and wildtype Populus trichocarpa (NSF Plant Genome Research Program Project 0922391) loading run annotation attributes 0.5132 SRR3207774 gene perturbation type knockdown of PAL2 | batch of trees NSF2 0.5047 SRR3207815 gene perturbation type knockdown of C3H3 | batch of trees NSF3 0.4934 SRR3207762 gene perturbation type knockdown of PAL5 | batch of trees NSF2 -0.4588 SRR3207712 gene perturbation type overexpression of CAD2 | batch of trees NSF1 -0.4602 SRR3207901 gene perturbation type knockdown of C4H2 | batch of trees NSF4 -0.4844 SRR3207716 gene perturbation type overexpression of CAD2 | batch of trees NSF1 2 ERP021848 High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 loading run annotation attributes 0.5053 ERR1864490 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102930418 | INSDC last update 2017-03-01T23:45:22Z | Submitter Id E-MTAB-5540:Stem-xylem-short-term-salt-replicate-2 | organism part stem xylem | sample name E-MTAB-5540:Stem-xylem-short-term-salt-replicate-2 0.4853 ERR1864491 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102931168 | INSDC last update 2017-03-01T23:45:22Z | Submitter Id E-MTAB-5540:Stem-xylem-short-term-salt-replicate-3 | organism part stem xylem | sample name E-MTAB-5540:Stem-xylem-short-term-salt-replicate-3 0.4675 ERR1864465 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102911668 | INSDC last update 2017-03-01T23:45:21Z | Submitter Id E-MTAB-5540:Stem-xylem-control-untreated-replicate-1 | organism part stem xylem | sample name E-MTAB-5540:Stem-xylem-control-untreated-replicate-1 -0.4287 ERR1864452 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102901918 | INSDC last update 2017-03-01T23:45:21Z | Submitter Id E-MTAB-5540:Root-prolonged-salt-replicate-3 | organism part root | sample name E-MTAB-5540:Root-prolonged-salt-replicate-3 -0.4321 ERR1864450 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102900418 | INSDC last update 2017-03-01T23:45:21Z | Submitter Id E-MTAB-5540:Root-prolonged-salt-replicate-1 | organism part root | sample name E-MTAB-5540:Root-prolonged-salt-replicate-1 -0.4409 ERR1864451 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102901168 | INSDC last update 2017-03-01T23:45:21Z | Submitter Id E-MTAB-5540:Root-prolonged-salt-replicate-2 | organism part root | sample name E-MTAB-5540:Root-prolonged-salt-replicate-2 3 SRP074300 RNA-seq of major tissues and xylem cell types of Populus trichocarpa loading run annotation attributes 0.4839 SRR3473014 source_name Combination of xylem fiber, vessel and ray cells | tissue Xylem | cell type Combination of fiber, vessel and ray cells 0.4625 SRR3473012 source_name Combination of xylem fiber, vessel and ray cells | tissue Xylem | cell type Combination of fiber, vessel and ray cells 0.4251 SRR3473007 source_name Xylem fiber cells | tissue Xylem | cell type Fiber cell -0.6104 SRR3472991 source_name Shoot tip | tissue Shoot tip -0.6238 SRR3472993 source_name Shoot tip | tissue Shoot tip -0.6268 SRR3472992 source_name Shoot tip | tissue Shoot tip 4 SRP072680 Populus trichocarpa Transcriptome or Gene expression loading run annotation attributes 0.4476 SRR3317206 isolate tree2 | tissue xylem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95631 0.3353 SRR3317480 isolate tree5 | tissue xylem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95637 0.2709 SRR3317208 isolate tree3 | tissue xylem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95633 -0.3301 SRR3317207 isolate tree3 | tissue phloem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95632 -0.3447 SRR3317473 isolate tree4 | tissue phloem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95634 -0.4046 SRR3317476 isolate tree5 | tissue phloem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95636 5 SRP103219 Differential gene expression analysis of drought responsive sense and antisense genes in Populus loading run annotation attributes 0.3821 SRR5423438 source_name drought treated_short-term_mature leaves | type drought treated | drought treatment short-term | tissue mature leaves | molecule subtype total RNA 0.3789 SRR5423440 source_name drought treated_short-term_mature leaves | type drought treated | drought treatment short-term | tissue mature leaves | molecule subtype total RNA 0.377 SRR5423437 source_name drought treated_short-term_mature leaves | type drought treated | drought treatment short-term | tissue mature leaves | molecule subtype total RNA -0.5754 SRR5423456 source_name control_long-term_apex | type control | drought treatment long-term | tissue apex | molecule subtype mRNA -0.5758 SRR5423457 source_name control_long-term_apex | type control | drought treatment long-term | tissue apex | molecule subtype mRNA -0.5929 SRR5423461 source_name control_long-term_apex | type control | drought treatment long-term | tissue apex | molecule subtype mRNA 6 SRP201788 A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa [RNA-Seq] loading run annotation attributes 0.3237 SRR9668930 0.2863 SRR9668929 0.2571 SRR9668928 -0.2636 SRR9321774 -0.2699 SRR9321772 -0.3352 SRR9321773 7 SRP035471 Ptr-miR397a is a negative regulator of laccase genes affecting lignin content in Populus trichocarpa loading run annotation attributes 0.3197 SRR1121302 genotype wild type 0.1773 SRR1121294 genotype over expression miR397a 0.1331 SRR1121299 genotype over expression miR397a -0.1204 SRR1121303 genotype wild type -0.1423 SRR1121300 genotype over expression miR397a -0.2745 SRR1121298 genotype over expression miR397a 8 SRP072040 RNAseq of drought treated Populus trichocarpa loading run annotation attributes 0.3081 SRR3241528 days after drought treatment 0 day 0.2968 SRR3241529 days after drought treatment 0 day 0.2642 SRR3241530 days after drought treatment 0 day -0.2083 SRR3241535 days after drought treatment 7 day -0.232 SRR3241538 days after drought treatment 7 day -0.268 SRR3241534 days after drought treatment 5 day 9 SRP028843 SND1 Transcription Factor-Directed Quantitative Functional Hierarchical Genetic Regulatory Network in Wood Formation in Populus trichocarpa loading run annotation attributes 0.1807 SRR952897 transfection time 7 hours | overexpressed gene PtrSND1-B1+sGFP 0.1456 SRR952888 transfection time 7 hours | overexpressed gene sGFP (control) 0.107 SRR952892 transfection time 25 hours | overexpressed gene sGFP (control) -0.1108 SRR952899 transfection time 12 hours | overexpressed gene PtrSND1-B1+sGFP -0.12 SRR952902 transfection time 25 hours | overexpressed gene PtrSND1-B1+sGFP -0.1748 SRR952903 transfection time 25 hours | overexpressed gene PtrSND1-B1+sGFP 10 SRP271234 RNAseq of transfected protoplasts of Populus trichocarpa loading run annotation attributes 0.1496 SRR12192592 transfected genes PtrMYB092 0.1483 SRR12192593 transfected genes PtrMYB092 0.0995 SRR12192580 transfected genes GFP -0.0987 SRR12192583 transfected genes GFP -0.1322 SRR12192584 transfected genes PtrHSFB3-1 -0.1349 SRR12192585 transfected genes PtrHSFB3-1	Loading 1 SRP103219 Differential gene expression analysis of drought responsive sense and antisense genes in Populus loading run annotation attributes 0.7713 SRR5423376 source_name drought treated_short-term_apex | drought treatment short-term | tissue apex | molecule subtype total RNA 0.7699 SRR5423378 source_name drought treated_short-term_apex | drought treatment short-term | tissue apex | molecule subtype total RNA 0.769 SRR5423370 source_name drought treated_short-term_apex | drought treatment short-term | tissue apex | molecule subtype total RNA -0.6039 SRR5423512 source_name drought treated_long-term_young leaves | drought treatment long-term | tissue young leaves | molecule subtype mRNA -0.606 SRR5423517 source_name drought treated_long-term_young leaves | drought treatment long-term | tissue young leaves | molecule subtype mRNA -0.6089 SRR5423511 source_name drought treated_long-term_young leaves | drought treatment long-term | tissue young leaves | molecule subtype mRNA 2 ERP021848 High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 loading run annotation attributes 0.3667 ERR1864476 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102919918 | INSDC last update 2017-03-01T23:45:21Z | Submitter Id E-MTAB-5540:Stem-xylem-prolonged-heat-replicate-3 | organism part stem xylem | sample name E-MTAB-5540:Stem-xylem-prolonged-heat-replicate-3 0.3435 ERR1864475 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102919168 | INSDC last update 2017-03-01T23:45:21Z | Submitter Id E-MTAB-5540:Stem-xylem-prolonged-heat-replicate-2 | organism part stem xylem | sample name E-MTAB-5540:Stem-xylem-prolonged-heat-replicate-2 0.2963 ERR1864474 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102918418 | INSDC last update 2017-03-01T23:45:21Z | Submitter Id E-MTAB-5540:Stem-xylem-prolonged-heat-replicate-1 | organism part stem xylem | sample name E-MTAB-5540:Stem-xylem-prolonged-heat-replicate-1 -0.2394 ERR1864426 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102882418 | INSDC last update 2017-03-01T23:45:20Z | Submitter Id E-MTAB-5540:Leaf-short-term-cold-replicate-1 | organism part vascular leaf | sample name E-MTAB-5540:Leaf-short-term-cold-replicate-1 -0.247 ERR1864428 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102883918 | INSDC last update 2017-03-01T23:45:20Z | Submitter Id E-MTAB-5540:Leaf-short-term-cold-replicate-3 | organism part vascular leaf | sample name E-MTAB-5540:Leaf-short-term-cold-replicate-3 -0.2487 ERR1864414 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102873418 | INSDC last update 2017-03-01T23:45:19Z | Submitter Id E-MTAB-5540:Leaf-prolonged-cold-replicate-1 | organism part vascular leaf | sample name E-MTAB-5540:Leaf-prolonged-cold-replicate-1 3 SRP201788 A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa [RNA-Seq] loading run annotation attributes 0.2533 SRR9668903 0.1903 SRR9321772 0.1663 SRR9321779 -0.2126 SRR9668897 -0.2233 SRR9668924 -0.225 SRR9321778 4 SRP072040 RNAseq of drought treated Populus trichocarpa loading run annotation attributes 0.1911 SRR3241537 days after drought treatment 7 day 0.1468 SRR3241536 days after drought treatment 7 day 0.0857 SRR3241535 days after drought treatment 7 day -0.0591 SRR3241527 days after drought treatment 0 day -0.11 SRR3241528 days after drought treatment 0 day -0.1259 SRR3241529 days after drought treatment 0 day 5 SRP071226 RNAseq of xylem tissue of transgenic and wildtype Populus trichocarpa (NSF Plant Genome Research Program Project 0922391) loading run annotation attributes 0.1879 SRR3208020 gene perturbation type knockdown of 4CL3,4CL5 | batch of trees NSF6 0.1709 SRR3207749 gene perturbation type knockdown of MYB167 | batch of trees NSF2 0.1477 SRR3208011 gene perturbation type knockdown of 4CL5 | batch of trees NSF6 -0.1678 SRR3207919 gene perturbation type wild type control | batch of trees NSF4 -0.177 SRR3207905 gene perturbation type knockdown of C4H2 | batch of trees NSF4 -0.1963 SRR3207903 gene perturbation type knockdown of C4H2 | batch of trees NSF4 6 SRP028843 SND1 Transcription Factor-Directed Quantitative Functional Hierarchical Genetic Regulatory Network in Wood Formation in Populus trichocarpa loading run annotation attributes 0.1567 SRR952892 transfection time 25 hours | overexpressed gene sGFP (control) 0.0997 SRR952890 transfection time 12 hours | overexpressed gene sGFP (control) 0.0534 SRR952893 transfection time 25 hours | overexpressed gene sGFP (control) -0.0542 SRR952886 transfection time 7 hours | overexpressed gene sGFP (control) -0.0792 SRR952895 transfection time 7 hours | overexpressed gene PtrSND1-B1+sGFP -0.088 SRR952903 transfection time 25 hours | overexpressed gene PtrSND1-B1+sGFP 7 SRP072680 Populus trichocarpa Transcriptome or Gene expression loading run annotation attributes 0.1376 SRR3317483 isolate tree6 | tissue xylem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95639 0.1074 SRR3317482 isolate tree6 | tissue phloem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95638 0.0526 SRR3317189 isolate tree1 | tissue xylem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95629 -0.035 SRR3317201 isolate tree2 | tissue phloem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95630 -0.0869 SRR3317476 isolate tree5 | tissue phloem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95636 -0.1055 SRR3317181 isolate tree1 | tissue phloem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95628 8 SRP074300 RNA-seq of major tissues and xylem cell types of Populus trichocarpa loading run annotation attributes 0.1353 SRR3473014 source_name Combination of xylem fiber, vessel and ray cells | tissue Xylem | cell type Combination of fiber, vessel and ray cells 0.1334 SRR3473012 source_name Combination of xylem fiber, vessel and ray cells | tissue Xylem | cell type Combination of fiber, vessel and ray cells 0.1117 SRR3473013 source_name Combination of xylem fiber, vessel and ray cells | tissue Xylem | cell type Combination of fiber, vessel and ray cells -0.148 SRR3472995 source_name Leaf | tissue Leaf -0.169 SRR3472996 source_name Leaf | tissue Leaf -0.2215 SRR3472994 source_name Leaf | tissue Leaf 9 SRP035471 Ptr-miR397a is a negative regulator of laccase genes affecting lignin content in Populus trichocarpa loading run annotation attributes 0.1223 SRR1121301 genotype wild type 0.0948 SRR1121302 genotype wild type 0.0647 SRR1121294 genotype over expression miR397a -0.0563 SRR1121298 genotype over expression miR397a -0.0657 SRR1121295 genotype over expression miR397a -0.0963 SRR1121292 genotype over expression miR397a 10 SRP271234 RNAseq of transfected protoplasts of Populus trichocarpa loading run annotation attributes 0.1101 SRR12192580 transfected genes GFP 0.1027 SRR12192581 transfected genes GFP 0.0747 SRR12192579 transfected genes GFP -0.0748 SRR12192584 transfected genes PtrHSFB3-1 -0.0812 SRR12192594 transfected genes PtrMYB092 -0.0869 SRR12192595 transfected genes PtrMYB092	Loading 1 SRP071226 RNAseq of xylem tissue of transgenic and wildtype Populus trichocarpa (NSF Plant Genome Research Program Project 0922391) loading run annotation attributes 0.4197 SRR3207696 gene perturbation type knockdown of PAL3 | batch of trees NSF1 0.4191 SRR3207900 gene perturbation type knockdown of C4H2 | batch of trees NSF4 0.4182 SRR3207874 gene perturbation type knockdown of C4H1 | batch of trees NSF4 -0.3349 SRR3208037 gene perturbation type knockdown of CCoAOMT1,CCoAOMT2 | batch of trees NSF6 -0.3627 SRR3208015 gene perturbation type knockdown of 4CL5 | batch of trees NSF6 -0.3924 SRR3208044 gene perturbation type knockdown of AldOMT2 | batch of trees NSF6 2 SRP103219 Differential gene expression analysis of drought responsive sense and antisense genes in Populus loading run annotation attributes 0.4599 SRR5423409 source_name control_short-term_mature leaves | type control | drought treatment short-term | tissue mature leaves | molecule subtype total RNA 0.4599 SRR5423414 source_name control_short-term_mature leaves | type control | drought treatment short-term | tissue mature leaves | molecule subtype total RNA 0.4596 SRR5423402 source_name control_short-term_mature leaves | type control | drought treatment short-term | tissue mature leaves | molecule subtype total RNA -0.3261 SRR5423484 source_name drought treated_long-term_apex | type drought treated | drought treatment long-term | tissue apex | molecule subtype mRNA -0.3276 SRR5423480 source_name drought treated_long-term_apex | type drought treated | drought treatment long-term | tissue apex | molecule subtype mRNA -0.3282 SRR5423483 source_name drought treated_long-term_apex | type drought treated | drought treatment long-term | tissue apex | molecule subtype mRNA 3 SRP072040 RNAseq of drought treated Populus trichocarpa loading run annotation attributes 0.2211 SRR3241527 days after drought treatment 0 day 0.1319 SRR3241528 days after drought treatment 0 day 0.1173 SRR3241533 days after drought treatment 5 day -0.1945 SRR3241537 days after drought treatment 7 day -0.236 SRR3241535 days after drought treatment 7 day -0.3011 SRR3241536 days after drought treatment 7 day 4 SRP072680 Populus trichocarpa Transcriptome or Gene expression loading run annotation attributes 0.2546 SRR3317474 isolate tree4 | tissue xylem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95635 0.1012 SRR3317473 isolate tree4 | tissue phloem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95634 0.1001 SRR3317476 isolate tree5 | tissue phloem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95636 -0.057 SRR3317189 isolate tree1 | tissue xylem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95629 -0.1795 SRR3317480 isolate tree5 | tissue xylem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95637 -0.2963 SRR3317483 isolate tree6 | tissue xylem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95639 5 SRP028843 SND1 Transcription Factor-Directed Quantitative Functional Hierarchical Genetic Regulatory Network in Wood Formation in Populus trichocarpa loading run annotation attributes 0.1562 SRR952888 transfection time 7 hours | overexpressed gene sGFP (control) 0.1178 SRR952897 transfection time 7 hours | overexpressed gene PtrSND1-B1+sGFP 0.1153 SRR952886 transfection time 7 hours | overexpressed gene sGFP (control) -0.1298 SRR952901 transfection time 25 hours | overexpressed gene PtrSND1-B1+sGFP -0.167 SRR952893 transfection time 25 hours | overexpressed gene sGFP (control) -0.2846 SRR952892 transfection time 25 hours | overexpressed gene sGFP (control) 6 SRP201788 A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa [RNA-Seq] loading run annotation attributes 0.254 SRR9668919 0.2475 SRR9668908 0.221 SRR9668928 -0.1908 SRR9668902 -0.2101 SRR9668927 -0.2151 SRR9321778 7 ERP021848 High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 loading run annotation attributes 0.2757 ERR1864463 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102910168 | INSDC last update 2017-03-01T23:45:21Z | Submitter Id E-MTAB-5540:Root-short-term-salt-replicate-2 | organism part root | sample name E-MTAB-5540:Root-short-term-salt-replicate-2 0.2719 ERR1864464 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102910918 | INSDC last update 2017-03-01T23:45:21Z | Submitter Id E-MTAB-5540:Root-short-term-salt-replicate-3 | organism part root | sample name E-MTAB-5540:Root-short-term-salt-replicate-3 0.2555 ERR1864462 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102909418 | INSDC last update 2017-03-01T23:45:21Z | Submitter Id E-MTAB-5540:Root-short-term-salt-replicate-1 | organism part root | sample name E-MTAB-5540:Root-short-term-salt-replicate-1 -0.1758 ERR1864486 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102927418 | INSDC last update 2017-03-01T23:45:22Z | Submitter Id E-MTAB-5540:Stem-xylem-short-term-heat-replicate-1 | organism part stem xylem | sample name E-MTAB-5540:Stem-xylem-short-term-heat-replicate-1 -0.1761 ERR1864419 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102877168 | INSDC last update 2017-03-01T23:45:19Z | Submitter Id E-MTAB-5540:Leaf-prolonged-drought-replicate-3 | organism part vascular leaf | sample name E-MTAB-5540:Leaf-prolonged-drought-replicate-3 -0.2039 ERR1864471 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102916168 | INSDC last update 2017-03-01T23:45:21Z | Submitter Id E-MTAB-5540:Stem-xylem-prolonged-drought-replicate-1 | organism part stem xylem | sample name E-MTAB-5540:Stem-xylem-prolonged-drought-replicate-1 8 SRP035471 Ptr-miR397a is a negative regulator of laccase genes affecting lignin content in Populus trichocarpa loading run annotation attributes 0.192 SRR1121292 genotype over expression miR397a 0.1312 SRR1121295 genotype over expression miR397a 0.0472 SRR1121303 genotype wild type -0.096 SRR1121294 genotype over expression miR397a -0.0998 SRR1121293 genotype over expression miR397a -0.1583 SRR1121302 genotype wild type 9 SRP074300 RNA-seq of major tissues and xylem cell types of Populus trichocarpa loading run annotation attributes 0.2449 SRR3472999 source_name Phloem | tissue Phloem 0.2144 SRR3473000 source_name Primary root | tissue Primary root 0.2064 SRR3473002 source_name Primary root | tissue Primary root -0.1406 SRR3473007 source_name Xylem fiber cells | tissue Xylem | cell type Fiber cell -0.1509 SRR3473014 source_name Combination of xylem fiber, vessel and ray cells | tissue Xylem | cell type Combination of fiber, vessel and ray cells -0.1563 SRR3473012 source_name Combination of xylem fiber, vessel and ray cells | tissue Xylem | cell type Combination of fiber, vessel and ray cells 10 SRP271234 RNAseq of transfected protoplasts of Populus trichocarpa loading run annotation attributes 0.1528 SRR12192585 transfected genes PtrHSFB3-1 0.1523 SRR12192584 transfected genes PtrHSFB3-1 0.1036 SRR12192589 transfected genes PtrHSFB3-1 -0.0914 SRR12192592 transfected genes PtrMYB092 -0.1358 SRR12192581 transfected genes GFP -0.1498 SRR12192580 transfected genes GFP	Loading 1 SRP071226 RNAseq of xylem tissue of transgenic and wildtype Populus trichocarpa (NSF Plant Genome Research Program Project 0922391) loading run annotation attributes 0.353 SRR3207743 gene perturbation type knockdown of PAL5 | batch of trees NSF2 0.3315 SRR3208038 gene perturbation type knockdown of CCoAOMT1,CCoAOMT2 | batch of trees NSF6 0.3233 SRR3208036 gene perturbation type knockdown of CCoAOMT1,CCoAOMT2 | batch of trees NSF6 -0.4359 SRR3207720 gene perturbation type wild type control | batch of trees NSF1 -0.4651 SRR3207713 gene perturbation type overexpression of CAD2 | batch of trees NSF1 -0.4684 SRR3207898 gene perturbation type knockdown of MYB156 | batch of trees NSF4 2 ERP021848 High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 loading run annotation attributes 0.3262 ERR1864443 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102895168 | INSDC last update 2017-03-01T23:45:20Z | Submitter Id E-MTAB-5540:Root-prolonged-cold-replicate-3 | organism part root | sample name E-MTAB-5540:Root-prolonged-cold-replicate-3 0.3125 ERR1864442 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102894418 | INSDC last update 2017-03-01T23:45:20Z | Submitter Id E-MTAB-5540:Root-prolonged-cold-replicate-2 | organism part root | sample name E-MTAB-5540:Root-prolonged-cold-replicate-2 0.304 ERR1864441 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102893668 | INSDC last update 2017-03-01T23:45:20Z | Submitter Id E-MTAB-5540:Root-prolonged-cold-replicate-1 | organism part root | sample name E-MTAB-5540:Root-prolonged-cold-replicate-1 -0.4205 ERR1864474 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102918418 | INSDC last update 2017-03-01T23:45:21Z | Submitter Id E-MTAB-5540:Stem-xylem-prolonged-heat-replicate-1 | organism part stem xylem | sample name E-MTAB-5540:Stem-xylem-prolonged-heat-replicate-1 -0.4225 ERR1864476 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102919918 | INSDC last update 2017-03-01T23:45:21Z | Submitter Id E-MTAB-5540:Stem-xylem-prolonged-heat-replicate-3 | organism part stem xylem | sample name E-MTAB-5540:Stem-xylem-prolonged-heat-replicate-3 -0.4498 ERR1864475 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102919168 | INSDC last update 2017-03-01T23:45:21Z | Submitter Id E-MTAB-5540:Stem-xylem-prolonged-heat-replicate-2 | organism part stem xylem | sample name E-MTAB-5540:Stem-xylem-prolonged-heat-replicate-2 3 SRP074300 RNA-seq of major tissues and xylem cell types of Populus trichocarpa loading run annotation attributes 0.3247 SRR3473002 source_name Primary root | tissue Primary root 0.2978 SRR3473000 source_name Primary root | tissue Primary root 0.2875 SRR3473001 source_name Primary root | tissue Primary root -0.3155 SRR3473013 source_name Combination of xylem fiber, vessel and ray cells | tissue Xylem | cell type Combination of fiber, vessel and ray cells -0.3338 SRR3473014 source_name Combination of xylem fiber, vessel and ray cells | tissue Xylem | cell type Combination of fiber, vessel and ray cells -0.3577 SRR3473012 source_name Combination of xylem fiber, vessel and ray cells | tissue Xylem | cell type Combination of fiber, vessel and ray cells 4 SRP072040 RNAseq of drought treated Populus trichocarpa loading run annotation attributes 0.2174 SRR3241533 days after drought treatment 5 day 0.0984 SRR3241535 days after drought treatment 7 day 0.0853 SRR3241531 days after drought treatment 5 day -0.127 SRR3241530 days after drought treatment 0 day -0.2025 SRR3241529 days after drought treatment 0 day -0.2173 SRR3241527 days after drought treatment 0 day 5 SRP103219 Differential gene expression analysis of drought responsive sense and antisense genes in Populus loading run annotation attributes 0.2093 SRR5423596 source_name drought treated_long-term_root | type drought treated | tissue root | molecule subtype total RNA 0.2089 SRR5423595 source_name drought treated_long-term_root | type drought treated | tissue root | molecule subtype total RNA 0.1849 SRR5423594 source_name control_long-term_root | type control | tissue root | molecule subtype total RNA -0.1444 SRR5423460 source_name control_long-term_apex | type control | tissue apex | molecule subtype mRNA -0.1487 SRR5423470 source_name control_long-term_apex | type control | tissue apex | molecule subtype mRNA -0.1801 SRR5423461 source_name control_long-term_apex | type control | tissue apex | molecule subtype mRNA 6 SRP028843 SND1 Transcription Factor-Directed Quantitative Functional Hierarchical Genetic Regulatory Network in Wood Formation in Populus trichocarpa loading run annotation attributes 0.2061 SRR952892 transfection time 25 hours | overexpressed gene sGFP (control) 0.1829 SRR952894 transfection time 25 hours | overexpressed gene sGFP (control) 0.1385 SRR952889 transfection time 12 hours | overexpressed gene sGFP (control) -0.1027 SRR952896 transfection time 7 hours | overexpressed gene PtrSND1-B1+sGFP -0.1138 SRR952886 transfection time 7 hours | overexpressed gene sGFP (control) -0.1278 SRR952887 transfection time 7 hours | overexpressed gene sGFP (control) 7 SRP072680 Populus trichocarpa Transcriptome or Gene expression loading run annotation attributes 0.1923 SRR3317483 isolate tree6 | tissue xylem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95639 0.1372 SRR3317482 isolate tree6 | tissue phloem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95638 0.0989 SRR3317181 isolate tree1 | tissue phloem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95628 -0.0827 SRR3317473 isolate tree4 | tissue phloem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95634 -0.1148 SRR3317208 isolate tree3 | tissue xylem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95633 -0.1573 SRR3317474 isolate tree4 | tissue xylem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95635 8 SRP271234 RNAseq of transfected protoplasts of Populus trichocarpa loading run annotation attributes 0.1818 SRR12192578 transfected genes GFP 0.1767 SRR12192579 transfected genes GFP 0.1168 SRR12192591 transfected genes PtrMYB092 -0.0712 SRR12192582 transfected genes GFP -0.1369 SRR12192594 transfected genes PtrMYB092 -0.1482 SRR12192595 transfected genes PtrMYB092 9 SRP201788 A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa [RNA-Seq] loading run annotation attributes 0.1602 SRR9668917 0.1241 SRR9668920 0.1237 SRR9668927 -0.1231 SRR9668903 -0.1313 SRR9668895 -0.1783 SRR9668900 10 SRP035471 Ptr-miR397a is a negative regulator of laccase genes affecting lignin content in Populus trichocarpa loading run annotation attributes 0.1153 SRR1121296 genotype over expression miR397a 0.0968 SRR1121293 genotype over expression miR397a 0.0844 SRR1121300 genotype over expression miR397a -0.0606 SRR1121294 genotype over expression miR397a -0.0738 SRR1121301 genotype wild type -0.1603 SRR1121297 genotype over expression miR397a	Loading 1 SRP072040 RNAseq of drought treated Populus trichocarpa loading run annotation attributes 0.4612 SRR3241533 days after drought treatment 5 day 0.4383 SRR3241534 days after drought treatment 5 day 0.341 SRR3241531 days after drought treatment 5 day -0.2443 SRR3241536 days after drought treatment 7 day -0.3335 SRR3241530 days after drought treatment 0 day -0.459 SRR3241527 days after drought treatment 0 day 2 SRP071226 RNAseq of xylem tissue of transgenic and wildtype Populus trichocarpa (NSF Plant Genome Research Program Project 0922391) loading run annotation attributes 0.4116 SRR3207716 gene perturbation type overexpression of CAD2 | batch of trees NSF1 0.3511 SRR3207830 gene perturbation type knockdown of CAD1 | batch of trees NSF3 0.3485 SRR3207714 gene perturbation type overexpression of CAD2 | batch of trees NSF1 -0.3713 SRR3207983 gene perturbation type knockdown of KNOX1 | batch of trees NSF5 -0.3865 SRR3207991 gene perturbation type knockdown of MYB003,MYB020 | batch of trees NSF5 -0.3954 SRR3207993 gene perturbation type knockdown of MYB003,MYB020 | batch of trees NSF5 3 SRP072680 Populus trichocarpa Transcriptome or Gene expression loading run annotation attributes 0.3145 SRR3317189 isolate tree1 | tissue xylem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95629 0.1887 SRR3317208 isolate tree3 | tissue xylem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95633 0.1518 SRR3317480 isolate tree5 | tissue xylem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95637 -0.1632 SRR3317207 isolate tree3 | tissue phloem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95632 -0.1992 SRR3317474 isolate tree4 | tissue xylem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95635 -0.1997 SRR3317201 isolate tree2 | tissue phloem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95630 4 ERP021848 High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 loading run annotation attributes 0.2963 ERR1864472 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102916918 | INSDC last update 2017-03-01T23:45:21Z | Submitter Id E-MTAB-5540:Stem-xylem-prolonged-drought-replicate-2 | organism part stem xylem | sample name E-MTAB-5540:Stem-xylem-prolonged-drought-replicate-2 0.2957 ERR1864424 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102880918 | INSDC last update 2017-03-01T23:45:20Z | Submitter Id E-MTAB-5540:Leaf-prolonged-salt-replicate-2 | organism part vascular leaf | sample name E-MTAB-5540:Leaf-prolonged-salt-replicate-2 0.2807 ERR1864425 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102881668 | INSDC last update 2017-03-01T23:45:20Z | Submitter Id E-MTAB-5540:Leaf-prolonged-salt-replicate-3 | organism part vascular leaf | sample name E-MTAB-5540:Leaf-prolonged-salt-replicate-3 -0.3111 ERR1864480 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102922918 | INSDC last update 2017-03-01T23:45:22Z | Submitter Id E-MTAB-5540:Stem-xylem-short-term-cold-replicate-1 | organism part stem xylem | sample name E-MTAB-5540:Stem-xylem-short-term-cold-replicate-1 -0.3449 ERR1864479 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102922168 | INSDC last update 2017-03-01T23:45:21Z | Submitter Id E-MTAB-5540:Stem-xylem-prolonged-salt-replicate-3 | organism part stem xylem | sample name E-MTAB-5540:Stem-xylem-prolonged-salt-replicate-3 -0.3869 ERR1864481 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102923668 | INSDC last update 2017-03-01T23:45:22Z | Submitter Id E-MTAB-5540:Stem-xylem-short-term-cold-replicate-2 | organism part stem xylem | sample name E-MTAB-5540:Stem-xylem-short-term-cold-replicate-2 5 SRP271234 RNAseq of transfected protoplasts of Populus trichocarpa loading run annotation attributes 0.2945 SRR12192579 transfected genes GFP 0.2928 SRR12192578 transfected genes GFP 0.117 SRR12192582 transfected genes GFP -0.1652 SRR12192595 transfected genes PtrMYB092 -0.167 SRR12192588 transfected genes PtrHSFB3-1 -0.1697 SRR12192594 transfected genes PtrMYB092 6 SRP074300 RNA-seq of major tissues and xylem cell types of Populus trichocarpa loading run annotation attributes 0.2867 SRR3473013 source_name Combination of xylem fiber, vessel and ray cells | tissue Xylem | cell type Combination of fiber, vessel and ray cells 0.2033 SRR3473010 source_name Xylem vessel cells | tissue Xylem | cell type Vessel cell 0.1314 SRR3473011 source_name Xylem vessel cells | tissue Xylem | cell type Vessel cell -0.1587 SRR3472997 source_name Phloem | tissue Phloem -0.1988 SRR3472999 source_name Phloem | tissue Phloem -0.2582 SRR3472998 source_name Phloem | tissue Phloem 7 SRP201788 A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa [RNA-Seq] loading run annotation attributes 0.2546 SRR9321773 0.2166 SRR9321772 0.2027 SRR9668902 -0.2515 SRR9668930 -0.2605 SRR9668928 -0.2664 SRR9668922 8 SRP028843 SND1 Transcription Factor-Directed Quantitative Functional Hierarchical Genetic Regulatory Network in Wood Formation in Populus trichocarpa loading run annotation attributes 0.2278 SRR952889 transfection time 12 hours | overexpressed gene sGFP (control) 0.2186 SRR952894 transfection time 25 hours | overexpressed gene sGFP (control) 0.1398 SRR952898 transfection time 12 hours | overexpressed gene PtrSND1-B1+sGFP -0.08 SRR952886 transfection time 7 hours | overexpressed gene sGFP (control) -0.1423 SRR952902 transfection time 25 hours | overexpressed gene PtrSND1-B1+sGFP -0.1696 SRR952893 transfection time 25 hours | overexpressed gene sGFP (control) 9 SRP035471 Ptr-miR397a is a negative regulator of laccase genes affecting lignin content in Populus trichocarpa loading run annotation attributes 0.193 SRR1121296 genotype over expression miR397a 0.1686 SRR1121302 genotype wild type 0.1477 SRR1121301 genotype wild type -0.1251 SRR1121298 genotype over expression miR397a -0.2799 SRR1121294 genotype over expression miR397a -0.3229 SRR1121297 genotype over expression miR397a 10 SRP103219 Differential gene expression analysis of drought responsive sense and antisense genes in Populus loading run annotation attributes 0.169 SRR5423446 source_name drought treated_short-term_mature leaves | type drought treated | drought treatment short-term | tissue mature leaves | molecule subtype total RNA 0.1649 SRR5423447 source_name drought treated_short-term_mature leaves | type drought treated | drought treatment short-term | tissue mature leaves | molecule subtype total RNA 0.1643 SRR5423439 source_name drought treated_short-term_mature leaves | type drought treated | drought treatment short-term | tissue mature leaves | molecule subtype total RNA -0.1671 SRR5423500 source_name control_long-term_young leaves | type control | drought treatment long-term | tissue young leaves | molecule subtype mRNA -0.1672 SRR5423501 source_name control_long-term_young leaves | type control | drought treatment long-term | tissue young leaves | molecule subtype mRNA -0.1681 SRR5423503 source_name control_long-term_young leaves | type control | drought treatment long-term | tissue young leaves | molecule subtype mRNA	Loading 1 SRP074300 RNA-seq of major tissues and xylem cell types of Populus trichocarpa loading run annotation attributes 0.2147 SRR3473003 source_name Stem differentiating xylem | tissue Stem differentiating xylem 0.1395 SRR3472994 source_name Leaf | tissue Leaf 0.1237 SRR3473002 source_name Primary root | tissue Primary root -0.3573 SRR3472997 source_name Phloem | tissue Phloem -0.3683 SRR3472999 source_name Phloem | tissue Phloem -0.4097 SRR3472998 source_name Phloem | tissue Phloem 2 ERP021848 High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 loading run annotation attributes 0.3969 ERR1864472 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102916918 | INSDC last update 2017-03-01T23:45:21Z | Submitter Id E-MTAB-5540:Stem-xylem-prolonged-drought-replicate-2 | organism part stem xylem | sample name E-MTAB-5540:Stem-xylem-prolonged-drought-replicate-2 0.3614 ERR1864473 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102917668 | INSDC last update 2017-03-01T23:45:21Z | Submitter Id E-MTAB-5540:Stem-xylem-prolonged-drought-replicate-3 | organism part stem xylem | sample name E-MTAB-5540:Stem-xylem-prolonged-drought-replicate-3 0.3286 ERR1864471 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102916168 | INSDC last update 2017-03-01T23:45:21Z | Submitter Id E-MTAB-5540:Stem-xylem-prolonged-drought-replicate-1 | organism part stem xylem | sample name E-MTAB-5540:Stem-xylem-prolonged-drought-replicate-1 -0.3431 ERR1864475 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102919168 | INSDC last update 2017-03-01T23:45:21Z | Submitter Id E-MTAB-5540:Stem-xylem-prolonged-heat-replicate-2 | organism part stem xylem | sample name E-MTAB-5540:Stem-xylem-prolonged-heat-replicate-2 -0.3513 ERR1864420 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102877918 | INSDC last update 2017-03-01T23:45:20Z | Submitter Id E-MTAB-5540:Leaf-prolonged-heat-replicate-1 | organism part vascular leaf | sample name E-MTAB-5540:Leaf-prolonged-heat-replicate-1 -0.3992 ERR1864422 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102879418 | INSDC last update 2017-03-01T23:45:20Z | Submitter Id E-MTAB-5540:Leaf-prolonged-heat-replicate-3 | organism part vascular leaf | sample name E-MTAB-5540:Leaf-prolonged-heat-replicate-3 3 SRP072680 Populus trichocarpa Transcriptome or Gene expression loading run annotation attributes 0.3973 SRR3317206 isolate tree2 | tissue xylem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95631 0.3612 SRR3317189 isolate tree1 | tissue xylem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95629 0.2864 SRR3317474 isolate tree4 | tissue xylem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95635 -0.3323 SRR3317473 isolate tree4 | tissue phloem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95634 -0.3391 SRR3317201 isolate tree2 | tissue phloem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95630 -0.393 SRR3317207 isolate tree3 | tissue phloem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95632 4 SRP072040 RNAseq of drought treated Populus trichocarpa loading run annotation attributes 0.3601 SRR3241533 days after drought treatment 5 day 0.2671 SRR3241532 days after drought treatment 5 day 0.2629 SRR3241531 days after drought treatment 5 day -0.2321 SRR3241529 days after drought treatment 0 day -0.3281 SRR3241527 days after drought treatment 0 day -0.3473 SRR3241530 days after drought treatment 0 day 5 SRP071226 RNAseq of xylem tissue of transgenic and wildtype Populus trichocarpa (NSF Plant Genome Research Program Project 0922391) loading run annotation attributes 0.334 SRR3207899 gene perturbation type knockdown of MYB156 | batch of trees NSF4 0.2937 SRR3207736 gene perturbation type knockdown of LIM2 | batch of trees NSF2 0.2862 SRR3207882 gene perturbation type knockdown of C4H1 | batch of trees NSF4 -0.2691 SRR3208022 gene perturbation type knockdown of CCoAOMT3 | batch of trees NSF6 -0.3043 SRR3208048 gene perturbation type knockdown of AldOMT2 | batch of trees NSF6 -0.3223 SRR3208023 gene perturbation type knockdown of CCoAOMT3 | batch of trees NSF6 6 SRP201788 A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa [RNA-Seq] loading run annotation attributes 0.252 SRR9668924 0.207 SRR9668929 0.1844 SRR9668909 -0.1817 SRR9668900 -0.2251 SRR9321777 -0.2709 SRR9668903 7 SRP028843 SND1 Transcription Factor-Directed Quantitative Functional Hierarchical Genetic Regulatory Network in Wood Formation in Populus trichocarpa loading run annotation attributes 0.1944 SRR952889 transfection time 12 hours | overexpressed gene sGFP (control) 0.1692 SRR952898 transfection time 12 hours | overexpressed gene PtrSND1-B1+sGFP 0.1316 SRR952895 transfection time 7 hours | overexpressed gene PtrSND1-B1+sGFP -0.1195 SRR952900 transfection time 12 hours | overexpressed gene PtrSND1-B1+sGFP -0.1426 SRR952899 transfection time 12 hours | overexpressed gene PtrSND1-B1+sGFP -0.1981 SRR952893 transfection time 25 hours | overexpressed gene sGFP (control) 8 SRP103219 Differential gene expression analysis of drought responsive sense and antisense genes in Populus loading run annotation attributes 0.2737 SRR5423519 source_name control_long-term_mature leaves | type control | drought treatment long-term | molecule subtype mRNA 0.2735 SRR5423523 source_name control_long-term_mature leaves | type control | drought treatment long-term | molecule subtype mRNA 0.2734 SRR5423520 source_name control_long-term_mature leaves | type control | drought treatment long-term | molecule subtype mRNA -0.1686 SRR5423426 source_name drought treated_short-term_mature leaves | type drought treated | drought treatment short-term | molecule subtype total RNA -0.1698 SRR5423424 source_name drought treated_short-term_mature leaves | type drought treated | drought treatment short-term | molecule subtype total RNA -0.1701 SRR5423430 source_name drought treated_short-term_mature leaves | type drought treated | drought treatment short-term | molecule subtype total RNA 9 SRP271234 RNAseq of transfected protoplasts of Populus trichocarpa loading run annotation attributes 0.2174 SRR12192584 transfected genes PtrHSFB3-1 0.2158 SRR12192585 transfected genes PtrHSFB3-1 0.0736 SRR12192590 transfected genes PtrMYB092 -0.0721 SRR12192582 transfected genes GFP -0.1366 SRR12192580 transfected genes GFP -0.14 SRR12192581 transfected genes GFP 10 SRP035471 Ptr-miR397a is a negative regulator of laccase genes affecting lignin content in Populus trichocarpa loading run annotation attributes 0.1334 SRR1121298 genotype over expression miR397a 0.0731 SRR1121297 genotype over expression miR397a 0.0537 SRR1121296 genotype over expression miR397a -0.1126 SRR1121293 genotype over expression miR397a -0.1158 SRR1121303 genotype wild type -0.1247 SRR1121302 genotype wild type	Loading 1 SRP071226 RNAseq of xylem tissue of transgenic and wildtype Populus trichocarpa (NSF Plant Genome Research Program Project 0922391) loading run annotation attributes 0.3635 SRR3208053 gene perturbation type knockdown of MYB002,MYB021 | batch of trees NSF6 0.3585 SRR3208003 gene perturbation type knockdown of 4CL3 | batch of trees NSF6 0.3534 SRR3208005 gene perturbation type knockdown of 4CL3 | batch of trees NSF6 -0.3543 SRR3207764 gene perturbation type knockdown of MYB221 | batch of trees NSF2 -0.3624 SRR3207756 gene perturbation type knockdown of MYB090 | batch of trees NSF2 -0.4832 SRR3207763 gene perturbation type knockdown of MYB221 | batch of trees NSF2 2 ERP021848 High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 loading run annotation attributes 0.3145 ERR1864445 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102896668 | INSDC last update 2017-03-01T23:45:20Z | Submitter Id E-MTAB-5540:Root-prolonged-drought-replicate-2 | organism part root | sample name E-MTAB-5540:Root-prolonged-drought-replicate-2 0.3141 ERR1864444 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102895918 | INSDC last update 2017-03-01T23:45:20Z | Submitter Id E-MTAB-5540:Root-prolonged-drought-replicate-1 | organism part root | sample name E-MTAB-5540:Root-prolonged-drought-replicate-1 0.2965 ERR1864446 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102897418 | INSDC last update 2017-03-01T23:45:20Z | Submitter Id E-MTAB-5540:Root-prolonged-drought-replicate-3 | organism part root | sample name E-MTAB-5540:Root-prolonged-drought-replicate-3 -0.2313 ERR1864436 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102889918 | INSDC last update 2017-03-01T23:45:20Z | Submitter Id E-MTAB-5540:Leaf-short-term-salt-replicate-2 | organism part vascular leaf | sample name E-MTAB-5540:Leaf-short-term-salt-replicate-2 -0.2399 ERR1864435 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102889168 | INSDC last update 2017-03-01T23:45:20Z | Submitter Id E-MTAB-5540:Leaf-short-term-salt-replicate-1 | organism part vascular leaf | sample name E-MTAB-5540:Leaf-short-term-salt-replicate-1 -0.2831 ERR1864478 Illumina HiSeq 2000 paired end sequencing; High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1 External Id SAMEA102921418 | INSDC last update 2017-03-01T23:45:21Z | Submitter Id E-MTAB-5540:Stem-xylem-prolonged-salt-replicate-2 | organism part stem xylem | sample name E-MTAB-5540:Stem-xylem-prolonged-salt-replicate-2 3 SRP028843 SND1 Transcription Factor-Directed Quantitative Functional Hierarchical Genetic Regulatory Network in Wood Formation in Populus trichocarpa loading run annotation attributes 0.2594 SRR952887 transfection time 7 hours | overexpressed gene sGFP (control) 0.2102 SRR952896 transfection time 7 hours | overexpressed gene PtrSND1-B1+sGFP 0.1904 SRR952886 transfection time 7 hours | overexpressed gene sGFP (control) -0.1658 SRR952891 transfection time 12 hours | overexpressed gene sGFP (control) -0.1752 SRR952900 transfection time 12 hours | overexpressed gene PtrSND1-B1+sGFP -0.1847 SRR952894 transfection time 25 hours | overexpressed gene sGFP (control) 4 SRP074300 RNA-seq of major tissues and xylem cell types of Populus trichocarpa loading run annotation attributes 0.2211 SRR3473004 source_name Stem differentiating xylem | tissue Stem differentiating xylem 0.16 SRR3472998 source_name Phloem | tissue Phloem 0.1596 SRR3472992 source_name Shoot tip | tissue Shoot tip -0.2443 SRR3473007 source_name Xylem fiber cells | tissue Xylem | cell type Fiber cell -0.2454 SRR3473006 source_name Xylem fiber cells | tissue Xylem | cell type Fiber cell -0.2543 SRR3473008 source_name Xylem fiber cells | tissue Xylem | cell type Fiber cell 5 SRP201788 A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa [RNA-Seq] loading run annotation attributes 0.1989 SRR9321776 0.1844 SRR9668895 0.1828 SRR9668897 -0.1639 SRR9668927 -0.1757 SRR9668923 -0.244 SRR9668920 6 SRP103219 Differential gene expression analysis of drought responsive sense and antisense genes in Populus loading run annotation attributes 0.1965 SRR5423503 source_name control_long-term_young leaves | type control | drought treatment long-term | tissue young leaves | molecule subtype mRNA 0.1507 SRR5423435 source_name drought treated_short-term_mature leaves | type drought treated | drought treatment short-term | tissue mature leaves | molecule subtype total RNA 0.1479 SRR5423426 source_name drought treated_short-term_mature leaves | type drought treated | drought treatment short-term | tissue mature leaves | molecule subtype total RNA -0.1796 SRR5423590 source_name drought treated_long-term_root | type drought treated | drought treatment long-term | tissue root | molecule subtype mRNA -0.1915 SRR5423572 source_name control_long-term_root | type control | drought treatment long-term | tissue root | molecule subtype mRNA -0.2104 SRR5423555 source_name control_long-term_root | type control | drought treatment long-term | tissue root | molecule subtype mRNA 7 SRP271234 RNAseq of transfected protoplasts of Populus trichocarpa loading run annotation attributes 0.1391 SRR12192594 transfected genes PtrMYB092 0.1375 SRR12192595 transfected genes PtrMYB092 0.1146 SRR12192584 transfected genes PtrHSFB3-1 -0.1159 SRR12192581 transfected genes GFP -0.1988 SRR12192579 transfected genes GFP -0.2041 SRR12192578 transfected genes GFP 8 SRP072680 Populus trichocarpa Transcriptome or Gene expression loading run annotation attributes 0.1172 SRR3317189 isolate tree1 | tissue xylem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95629 0.1079 SRR3317476 isolate tree5 | tissue phloem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95636 0.057 SRR3317480 isolate tree5 | tissue xylem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95637 -0.1023 SRR3317207 isolate tree3 | tissue phloem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95632 -0.1063 SRR3317206 isolate tree2 | tissue xylem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95631 -0.1491 SRR3317201 isolate tree2 | tissue phloem | biomaterial_provider Groover Lab, Pacific Southwest Research Station, 1731 Research Park Drive, Davis, CA 95630 9 SRP072040 RNAseq of drought treated Populus trichocarpa loading run annotation attributes 0.1039 SRR3241535 days after drought treatment 7 day 0.0783 SRR3241536 days after drought treatment 7 day 0.0442 SRR3241531 days after drought treatment 5 day -0.0535 SRR3241529 days after drought treatment 0 day -0.085 SRR3241533 days after drought treatment 5 day -0.2289 SRR3241532 days after drought treatment 5 day 10 SRP035471 Ptr-miR397a is a negative regulator of laccase genes affecting lignin content in Populus trichocarpa loading run annotation attributes 0.0944 SRR1121303 genotype wild type 0.0547 SRR1121293 genotype over expression miR397a 0.0498 SRR1121302 genotype wild type -0.0445 SRR1121299 genotype over expression miR397a -0.0518 SRR1121294 genotype over expression miR397a -0.1018 SRR1121295 genotype over expression miR397a
Upper 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC112323789 ribulose bisphosphate carboxylase large chain 112323789 22.65 LOC7474559 glyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic 7474559 POPTR_002G007100v3 18.88 LOC7488408 phosphomannomutase/phosphoglucomutase 7488408 POPTR_008G131400v3 17.37 LOC7477443 phenolic glucoside malonyltransferase 1 7477443 POPTR_004G096300v3 15.29 LOC7471699 heavy metal-associated isoprenylated plant protein 47 7471699 POPTR_001G468500v3 14.97 LOC7468533 triacylglycerol lipase 2 7468533 POPTR_014G159800v3 14.94 LOC112323884 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic 112323884 POPTR_013G074800v3 14.31 LOC7496826 carbonic anhydrase 2 7496826 POPTR_001G348900v3 13.70 LOC7485534 thiamine thiazole synthase 2, chloroplastic 7485534 POPTR_011G025200v3 13.15 LOC18099625 abscisic stress-ripening protein 3 18099625 POPTR_005G193600v3 12.93 LOC7473220 uncharacterized LOC7473220 7473220 POPTR_008G189100v3 12.68 LOC7470700 GATA transcription factor 21 7470700 POPTR_006G229200v3 12.60 LOC18107754 GDSL esterase/lipase At4g30140 18107754 POPTR_018G089100v3 12.14 LOC18105327 protein ECERIFERUM 1 18105327 POPTR_014G152300v3 11.77 LOC7465173 peroxidase 4 7465173 POPTR_013G156400v3 11.28 LOC7489892 cellulose synthase-like protein H1 7489892 POPTR_002G227300v3 11.21 LOC18104342 metalloendoproteinase 1 18104342 POPTR_013G100400v3 10.93 LOC18100793 uncharacterized LOC18100793 18100793 POPTR_006G279200v3 10.83 LOC7469083 glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic/amyloplastic 7469083 POPTR_008G195100v3 10.81 LOC18094143 ABC transporter B family member 2 18094143 POPTR_001G139700v3 10.69 LOC18100212 MLO-like protein 3 18100212 POPTR_006G129700v3 10.67 LOC7497387 indole-3-acetic acid-amido synthetase GH3.10 7497387 POPTR_013G144300v3 10.30 LOC18110360 GDSL esterase/lipase At5g45670 18110360 POPTR_018G089300v3 10.24 LOC7463142 11-beta-hydroxysteroid dehydrogenase 1B 7463142 POPTR_015G099900v3 10.18 LOC7488951 GDSL esterase/lipase At1g29660 7488951 POPTR_018G088800v3 10.13 LOC7461668 transcription factor FAMA 7461668 POPTR_001G314400v3 10.09 LOC112326879 auxin-binding protein ABP19a-like 112326879 POPTR_003G065300v3 10.05 LOC7458811 RING-H2 finger protein ATL73 7458811 POPTR_019G130100v3 9.98 LOC18105329 protein ECERIFERUM 1 18105329 POPTR_014G152600v3 9.93 LOC7476747 21 kDa protein 7476747 POPTR_015G128200v3 9.89 LOC7475695 auxin-binding protein ABP19a 7475695 POPTR_013G141900v3 9.80 LOC7488717 mitoferrin 7488717 POPTR_016G125200v3 9.69 LOC7485279 protein ECERIFERUM 3 7485279 POPTR_006G177500v3 9.11 LOC18103394 G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 18103394 POPTR_T023400v3 9.00 LOC7485626 high mobility group B protein 9 7485626 POPTR_005G246700v3 8.92 LOC7474554 protein PLASTID MOVEMENT IMPAIRED 1 7474554 POPTR_002G006100v3 8.91 LOC7454978 photosystem II 10 kDa polypeptide, chloroplastic 7454978 POPTR_011G142200v3 8.87 LOC7484386 WD repeat-containing protein RUP2 7484386 POPTR_012G140200v3 8.50 LOC18110359 GDSL esterase/lipase At1g29670 18110359 POPTR_018G089200v3 8.43 LOC18096332 axial regulator YABBY 1 18096332 POPTR_002G145100v3 8.40 LOC7461684 ABC transporter G family member 11 7461684 POPTR_001G311500v3 8.33 LOC7461568 GDSL esterase/lipase At1g29670 7461568 POPTR_018G088500v3 8.18 LOC7494801 very-long-chain 3-oxoacyl-CoA reductase-like protein At1g24470 7494801 POPTR_008G181600v3 8.05 LOC7464926 putative ripening-related protein 1 7464926 POPTR_014G082700v3 8.04 LOC7457566 uncharacterized LOC7457566 7457566 POPTR_009G094100v3 7.95 LOC7475097 uncharacterized LOC7475097 7475097 POPTR_001G188700v3 7.93 LOC7470576 uncharacterized LOC7470576 7470576 POPTR_001G188400v3 7.88 psbL photosystem II protein L 4929685 Poptr_cp038 7.67 LOC7454979 (-)-germacrene D synthase 7454979 POPTR_011G142800v3 7.55 LOC7494760 ammonium transporter 1 member 1 7494760 POPTR_008G173800v3 7.50 LOC7497425 protein NUCLEAR FUSION DEFECTIVE 4 7497425 POPTR_013G154000v3 7.48 LOC18105332 protein ECERIFERUM 1 18105332 POPTR_014G152900v3 7.45 LOC7490946 auxin-binding protein ABP19a 7490946 POPTR_001G169000v3 7.30 LOC7486657 cyanogenic beta-glucosidase 7486657 POPTR_001G225900v3 7.28 LOC7468122 galactinol synthase 1 7468122 POPTR_010G150400v3 7.12 LOC18094956 cyanogenic beta-glucosidase 18094956 POPTR_001G226100v3 7.00 LOC7497748 uncharacterized LOC7497748 7497748 POPTR_007G003600v3 6.93 LOC18098821 uncharacterized LOC18098821 18098821 POPTR_005G037600v3 6.73 LOC7469566 transcription activator GLK1 7469566 POPTR_007G136900v3 6.71 LOC7494283 indole-3-acetic acid-induced protein ARG7 7494283 POPTR_009G126700v3 6.55 LOC7496915 ABC transporter B family member 13 7496915 POPTR_002G019600v3 6.51 LOC18099931 uncharacterized LOC18099931 18099931 6.48 LOC7461760 O-glucosyltransferase rumi homolog 7461760 POPTR_002G157800v3 6.48 LOC7489432 GDSL esterase/lipase At1g29670 7489432 POPTR_018G089400v3 6.44 LOC18107988 pelargonidin 3-O-(6-caffeoylglucoside) 5-O-(6-O-malonylglucoside) 4'''-malonyltransferase 18107988 POPTR_019G001200v3 6.41 LOC18109921 eugenol synthase 1 18109921 POPTR_013G103900v3 6.29 LOC7495972 myb-related protein 306 7495972 POPTR_017G082500v3 6.28 LOC7479199 peroxisomal membrane protein 11B 7479199 POPTR_003G108900v3 6.13 LOC7470927 uncharacterized LOC7470927 7470927 POPTR_011G132900v3 6.09 LOC7461284 transcription factor FAMA 7461284 POPTR_017G054500v3 5.94 LOC7470242 uncharacterized LOC7470242 7470242 POPTR_004G050600v3 5.88 LOC18106312 uncharacterized LOC18106312 18106312 5.77 LOC18097807 probable carboxylesterase 1 18097807 POPTR_004G142900v3 5.65 LOC18104108 tyrosine decarboxylase 1 18104108 POPTR_013G052900v3 5.64 LOC7469878 protein NDH-DEPENDENT CYCLIC ELECTRON FLOW 5 7469878 POPTR_019G034000v3 5.48 LOC18104308 eugenol synthase 1 18104308 POPTR_013G104000v3 5.34 LOC7463791 UDP-glycosyltransferase 79B6 7463791 POPTR_011G097900v3 5.29 LOC7493527 BEL1-like homeodomain protein 11 7493527 POPTR_005G232000v3 5.03 LOC112325786 transcription activator GLK1-like 112325786 POPTR_T098900v3 4.98 LOC18108586 indole-3-acetic acid-amido synthetase GH3.10 18108586 POPTR_019G103500v3 4.93 LOC7461571 GDSL esterase/lipase At1g29660 7461571 POPTR_018G088600v3 4.59 LOC7473472 sphingolipid C9-methyltransferase 2 7473472 POPTR_008G170300v3 4.45 LOC18098121 uncharacterized LOC18098121 18098121 POPTR_004G202900v3 4.40 LOC7458281 GDSL esterase/lipase At2g42990 7458281 POPTR_002G219700v3 4.36 LOC7488356 3-ketoacyl-CoA synthase 6 7488356 POPTR_008G120300v3 4.36 LOC7463062 transcription factor TCP13 7463062 POPTR_T146100v3 4.35 LOC7468536 GDSL esterase/lipase At2g04570 7468536 POPTR_014G160100v3 4.34 LOC7462884 abscisic acid 8'-hydroxylase 4 7462884 POPTR_002G126100v3 4.27 LOC7495248 pectinesterase inhibitor 6 7495248 POPTR_014G129400v3 4.25 LOC18107914 ABC transporter G family member 11 18107914 POPTR_018G152600v3 4.22 LOC7493492 WUSCHEL-related homeobox 1 7493492 POPTR_012G047700v3 3.94 LOC7464028 protein RADIALIS-like 2 7464028 POPTR_009G116600v3 3.92 LOC7476749 21 kDa protein 7476749 POPTR_015G128400v3 3.91 LOC18106924 3-oxo-Delta(4,5)-steroid 5-beta-reductase 18106924 POPTR_017G030400v3 3.85 LOC112327900 ABC transporter G family member 11-like 112327900 POPTR_001G312200v3 3.84 LOC7476301 GDSL esterase/lipase At1g29670 7476301 POPTR_004G064500v3 3.76 LOC7468347 uncharacterized protein PAM68-like 7468347 POPTR_004G072900v3 3.57 LOC7493857 protein DETOXIFICATION 24 7493857 POPTR_013G069200v3 3.56 LOC7478666 uncharacterized LOC7478666 7478666 POPTR_001G292000v3 3.55 LOC7471087 galactinol synthase 1 7471087 POPTR_008G101000v3 3.47	Upper 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC7470544 uncharacterized LOC7470544 7470544 POPTR_001G204300v3 70.71 psbA photosystem II protein D1 4929629 Poptr_cp001 69.37 LOC7484743 photosynthetic NDH subunit of subcomplex B 4, chloroplastic 7484743 POPTR_012G068500v3 67.30 LOC18096313 J domain-containing protein required for chloroplast accumulation response 1 18096313 POPTR_002G134300v3 66.48 LOC7494389 uncharacterized LOC7494389 7494389 POPTR_013G090200v3 61.76 LOC7465539 protein DETOXIFICATION 27 7465539 POPTR_007G010200v3 60.96 LOC7470027 fructose-bisphosphate aldolase 1, chloroplastic 7470027 POPTR_004G162400v3 60.75 LOC7453596 sodium/calcium exchanger NCL2 7453596 POPTR_001G375400v3 60.75 LOC7473428 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 7473428 POPTR_008G157400v3 59.26 LOC7462891 BRI1 kinase inhibitor 1 7462891 POPTR_002G127100v3 58.96 LOC7494712 glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic 7494712 POPTR_005G254100v3 58.61 LOC7484859 ACT domain-containing protein ACR6 7484859 POPTR_012G102200v3 58.22 LOC7460752 uncharacterized LOC7460752 7460752 POPTR_010G046400v3 58.14 LOC18096946 glycine cleavage system H protein 3, mitochondrial 18096946 POPTR_003G089300v3 57.60 LOC7478511 glucan endo-1,3-beta-glucosidase 7478511 POPTR_001G255100v3 57.52 LOC7493921 uncharacterized LOC7493921 7493921 POPTR_013G085300v3 57.39 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit 4929677 Poptr_cp030 57.30 LOC18095522 peroxisomal (S)-2-hydroxy-acid oxidase 18095522 POPTR_001G394400v3 57.28 LOC18094258 photosynthetic NDH subunit of subcomplex B 1, chloroplastic 18094258 POPTR_001G044300v3 57.27 LOC7488015 chlorophyll a-b binding protein CP29.3, chloroplastic 7488015 POPTR_008G067300v3 57.26 LOC7494720 protein PLASTID MOVEMENT IMPAIRED 1 7494720 POPTR_005G255500v3 57.07 LOC7458470 cellulose synthase-like protein E6 7458470 POPTR_006G004300v3 57.02 LOC7458602 photosynthetic NDH subunit of lumenal location 1, chloroplastic 7458602 POPTR_010G210000v3 56.75 LOC7463993 fructose-bisphosphate aldolase 1, chloroplastic 7463993 POPTR_009G124100v3 56.69 LOC18099496 ribulose bisphosphate carboxylase small chain, chloroplastic 18099496 POPTR_017G114600v3 56.54 LOC18096890 expansin-like B1 18096890 POPTR_003G083200v3 56.27 rps14 ribosomal protein S14 4929661 Poptr_cp020 56.19 LOC7495216 calvin cycle protein CP12-2, chloroplastic 7495216 POPTR_014G120700v3 56.01 LOC7486795 homeobox-leucine zipper protein ATHB-7 7486795 POPTR_014G103000v3 55.91 LOC18104499 ATP synthase delta chain, chloroplastic 18104499 POPTR_013G117000v3 55.67 LOC112324764 uncharacterized LOC112324764 112324764 55.62 LOC18107608 putative GATA transcription factor 22 18107608 POPTR_018G053600v3 55.47 LOC7465099 abscisic acid 8'-hydroxylase 2 7465099 POPTR_001G242600v3 55.34 LOC7461652 probable sucrose-phosphate synthase 3 7461652 POPTR_001G317600v3 55.32 LOC112324789 berberine bridge enzyme-like 8 112324789 POPTR_001G462400v3 55.17 psaA photosystem I P700 chlorophyll a apoprotein A1 4929663 Poptr_cp022 54.88 LOC18094096 phosphoribulokinase, chloroplastic 18094096 POPTR_001G134000v3 54.78 LOC112327176 transcription factor TCP13 112327176 POPTR_004G116100v3 54.77 LOC7460564 uncharacterized LOC7460564 7460564 POPTR_001G059500v3 54.72 LOC7463062 transcription factor TCP13 7463062 POPTR_T146100v3 54.70 LOC7488717 mitoferrin 7488717 POPTR_016G125200v3 54.65 psaB photosystem I P700 chlorophyll a apoprotein A2 4929662 Poptr_cp021 54.52 LOC7454978 photosystem II 10 kDa polypeptide, chloroplastic 7454978 POPTR_011G142200v3 54.42 LOC7470239 uncharacterized LOC7470239 7470239 POPTR_004G051500v3 54.18 LOC18104420 NAD(P)H-quinone oxidoreductase subunit T, chloroplastic 18104420 POPTR_013G109000v3 54.03 LOC7490927 PGR5-like protein 1A, chloroplastic 7490927 POPTR_001G113000v3 53.93 LOC18110663 ankyrin repeat-containing protein At5g02620 18110663 POPTR_019G107800v3 53.83 LOC7478371 boron transporter 4 7478371 POPTR_003G059700v3 53.45 LOC112325189 metallothionein-like protein type 3 112325189 POPTR_001G400100v3 53.40 LOC18110661 ankyrin repeat-containing protein At5g02620 18110661 POPTR_019G105900v3 53.39 LOC7459773 NAD(P)H-quinone oxidoreductase subunit L, chloroplastic 7459773 POPTR_010G110400v3 53.32 LOC7485810 basic leucine zipper 1 7485810 POPTR_010G142900v3 53.31 LOC7475781 carboxymethylenebutenolidase homolog 7475781 POPTR_019G079000v3 53.28 LOC7495652 uncharacterized LOC7495652 7495652 POPTR_006G025200v3 53.17 LOC7484381 low-temperature-induced 65 kDa protein 7484381 POPTR_012G141300v3 53.17 LOC18109283 universal stress protein A-like protein 18109283 POPTR_014G122000v3 53.09 LOC7485534 thiamine thiazole synthase 2, chloroplastic 7485534 POPTR_011G025200v3 52.98 LOC7469191 2-oxoisovalerate dehydrogenase subunit alpha 1, mitochondrial 7469191 POPTR_005G185400v3 52.88 LOC18108612 ankyrin repeat-containing protein At5g02620 18108612 POPTR_019G107700v3 52.81 psbE photosystem II protein V 4929687 Poptr_cp040 52.70 LOC7496048 linoleate 13S-lipoxygenase 2-1, chloroplastic 7496048 POPTR_001G015400v3 52.70 LOC7463155 photosystem II 22 kDa protein, chloroplastic 7463155 POPTR_002G083500v3 52.70 LOC7455512 serine hydroxymethyltransferase 1, mitochondrial 7455512 POPTR_010G254700v3 52.69 LOC18099625 abscisic stress-ripening protein 3 18099625 POPTR_005G193600v3 52.54 LOC18107022 isoprene synthase, chloroplastic 18107022 POPTR_017G041700v3 52.25 LOC18095468 polyphenol oxidase, chloroplastic 18095468 POPTR_001G388900v3 52.22 LOC7489649 NAC transcription factor 47 7489649 POPTR_013G054000v3 52.17 LOC7466033 fructose-1,6-bisphosphatase, chloroplastic 7466033 POPTR_016G106900v3 52.06 LOC7468347 uncharacterized protein PAM68-like 7468347 POPTR_004G072900v3 51.96 LOC18101595 1-aminocyclopropane-1-carboxylate oxidase homolog 1 18101595 POPTR_008G165400v3 51.92 LOC18099186 chaperone protein dnaJ 11, chloroplastic 18099186 POPTR_005G113100v3 51.86 LOC18096085 probable nucleoredoxin 2 18096085 POPTR_002G017200v3 51.84 LOC7478091 geraniol 8-hydroxylase 7478091 POPTR_001G113900v3 51.73 LOC7498046 photosynthetic NDH subunit of subcomplex B 5, chloroplastic 7498046 POPTR_010G078800v3 51.72 LOC7495269 sugar carrier protein C 7495269 POPTR_011G042100v3 51.72 LOC7477424 ribulose bisphosphate carboxylase small chain, chloroplastic 7477424 POPTR_004G100000v3 51.70 LOC7461489 uncharacterized LOC7461489 7461489 POPTR_002G256900v3 51.69 LOC7456397 protein TIC 62, chloroplastic 7456397 POPTR_009G111400v3 51.68 LOC7492113 NAC domain-containing protein 21/22 7492113 POPTR_005G098200v3 51.59 LOC7497748 uncharacterized LOC7497748 7497748 POPTR_007G003600v3 51.55 LOC7461601 uncharacterized protein At4g14100 7461601 POPTR_T094000v3 51.54 LOC7457777 uncharacterized LOC7457777 7457777 POPTR_015G084200v3 51.54 psbJ photosystem II protein J 4929684 Poptr_cp037 51.51 LOC7477824 metal-nicotianamine transporter YSL1 7477824 POPTR_001G084400v3 51.47 LOC7464751 NAD(P)H-quinone oxidoreductase subunit N, chloroplastic 7464751 POPTR_013G160600v3 51.37 LOC7477130 uncharacterized LOC7477130 7477130 POPTR_005G084400v3 51.28 LOC7491901 type I inositol polyphosphate 5-phosphatase 2 7491901 POPTR_003G088300v3 51.14 LOC112324528 fructose-1,6-bisphosphatase, chloroplastic-like 112324528 POPTR_016G108900v3 51.05 LOC7492123 catalase-2 7492123 POPTR_005G100400v3 51.04 LOC7472471 2-methylene-furan-3-one reductase 7472471 POPTR_016G136100v3 51.03 psbD photosystem II protein D2 4929654 Poptr_cp016 50.97 LOC7453636 chaperone protein dnaJ 11, chloroplastic 7453636 POPTR_004G172300v3 50.90 LOC7458129 ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 7458129 POPTR_010G200500v3 50.76 atpB ATP synthase CF1 beta subunit 4929676 Poptr_cp029 50.73 LOC7497858 glutaredoxin domain-containing cysteine-rich protein 1 7497858 POPTR_003G141800v3 50.66 LOC7474554 protein PLASTID MOVEMENT IMPAIRED 1 7474554 POPTR_002G006100v3 50.56 LOC18104570 serine carboxypeptidase-like 3 18104570 POPTR_013G124900v3 50.53 LOC7475965 monothiol glutaredoxin-S2 7475965 POPTR_010G021800v3 50.45 LOC7479199 peroxisomal membrane protein 11B 7479199 POPTR_003G108900v3 50.40 LOC7494653 root phototropism protein 2 7494653 POPTR_019G131600v3 50.37	Upper 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC7485810 basic leucine zipper 1 7485810 POPTR_010G142900v3 61.70 LOC18100635 uncharacterized LOC18100635 18100635 61.58 LOC7493967 snakin-2 7493967 POPTR_T155100v3 60.83 LOC7492427 glu S.griseus protease inhibitor 7492427 POPTR_010G075400v3 59.07 LOC18104336 bark storage protein B 18104336 POPTR_013G101000v3 57.47 LOC7481640 CASP-like protein 1D1 7481640 POPTR_008G205000v3 57.38 LOC18096890 expansin-like B1 18096890 POPTR_003G083200v3 56.68 LOC7496123 zeatin O-glucosyltransferase 7496123 POPTR_006G048200v3 56.59 LOC7491938 uncharacterized LOC7491938 7491938 55.73 LOC7492113 NAC domain-containing protein 21/22 7492113 POPTR_005G098200v3 55.05 LOC18101623 probable glutathione S-transferase 18101623 POPTR_008G175100v3 54.89 LOC7474610 pro-hevein 7474610 POPTR_013G041600v3 54.82 LOC7470435 endochitinase 2 7470435 POPTR_004G182000v3 54.62 LOC7475437 cell wall / vacuolar inhibitor of fructosidase 1 7475437 POPTR_010G063000v3 54.46 LOC112325259 wound-responsive protein GWIN3-like 112325259 POPTR_019G124500v3 54.37 LOC7459997 myb-related protein 305 7459997 POPTR_010G064000v3 54.20 LOC7480705 basic 7S globulin 7480705 POPTR_002G054900v3 54.15 LOC18108653 wound-responsive protein GWIN3 18108653 POPTR_019G122100v3 53.49 LOC112325152 wound-responsive protein GWIN3-like 112325152 POPTR_019G124700v3 53.45 LOC7488130 uncharacterized LOC7488130 7488130 53.44 LOC7460421 protein LURP-one-related 15 7460421 POPTR_016G131600v3 53.41 LOC7482890 MLP-like protein 328 7482890 POPTR_008G131200v3 52.85 LOC7478024 probable polyol transporter 3 7478024 POPTR_007G027900v3 52.77 LOC18104481 sucrose transport protein SUC8 18104481 POPTR_013G115200v3 52.33 LOC7480097 cytochrome P450 87A3 7480097 POPTR_001G270400v3 51.79 LOC7495163 7-deoxyloganetin glucosyltransferase 7495163 POPTR_002G098400v3 51.11 LOC18103911 extensin-1 18103911 POPTR_012G120700v3 50.76 LOC18103031 uncharacterized LOC18103031 18103031 POPTR_011G053300v3 50.68 LOC7478026 phosphatidylinositol transfer protein 3 7478026 POPTR_007G025900v3 50.46 LOC7495964 uncharacterized LOC7495964 7495964 49.85 LOC7464930 cationic peroxidase 1 7464930 POPTR_013G154400v3 49.72 LOC18104339 bark storage protein A 18104339 POPTR_013G100700v3 49.63 LOC7478680 pathogenesis-related protein 1 7478680 POPTR_001G288600v3 49.63 LOC18102814 major allergen Pru ar 1 18102814 POPTR_011G026200v3 49.53 LOC18108092 alpha-amylase/subtilisin inhibitor 18108092 POPTR_019G011000v3 49.48 LOC7494660 probable glutathione S-transferase parA 7494660 POPTR_019G130600v3 49.40 LOC7471112 bZIP transcription factor 53 7471112 POPTR_008G106700v3 49.29 LOC7489112 cannabidiolic acid synthase-like 1 7489112 POPTR_011G158100v3 49.13 LOC7477401 uncharacterized LOC7477401 7477401 POPTR_004G044300v3 49.11 LOC7494050 BON1-associated protein 2 7494050 POPTR_002G155300v3 49.04 LOC7463865 cytochrome P450 705A5 7463865 POPTR_001G270900v3 48.84 LOC18097308 miraculin 18097308 POPTR_004G000400v3 48.59 LOC18101322 putative glycine-rich cell wall structural protein 1 18101322 POPTR_008G028100v3 48.23 LOC7484341 ethylene-responsive transcription factor ERF113 7484341 POPTR_012G108500v3 48.13 LOC7497347 putative expansin-B2 7497347 POPTR_014G066300v3 48.11 LOC7469862 NAC transcription factor 47 7469862 POPTR_019G031400v3 47.92 LOC18094172 AT-hook motif nuclear-localized protein 23 18094172 POPTR_001G142800v3 47.92 LOC7478098 AT-hook motif nuclear-localized protein 26 7478098 POPTR_001G115200v3 47.86 LOC18108801 probable glutathione S-transferase 18108801 POPTR_008G175000v3 47.65 LOC18106197 uncharacterized LOC18106197 18106197 47.64 LOC112323232 probable glutathione S-transferase parA 112323232 POPTR_T178900v3 47.35 LOC7488716 peroxidase N1 7488716 POPTR_016G125000v3 47.01 LOC7482802 bidirectional sugar transporter SWEET15 7482802 POPTR_001G060900v3 46.95 LOC7489720 peroxidase 10 7489720 POPTR_005G135300v3 46.82 LOC7468636 uncharacterized LOC7468636 7468636 POPTR_006G254300v3 46.77 LOC7492415 ethylene-responsive transcription factor 1B 7492415 POPTR_010G072300v3 46.76 LOC112325750 leucine-rich repeat extensin-like protein 3 112325750 POPTR_T089100v3 46.76 LOC7455621 F-box/kelch-repeat protein At1g15670 7455621 POPTR_006G196900v3 46.54 LOC7492425 AT-hook motif nuclear-localized protein 20 7492425 POPTR_010G074200v3 46.44 LOC7463352 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 7463352 POPTR_009G169900v3 46.41 LOC18104971 cytochrome P450 CYP82D47 18104971 POPTR_014G037900v3 46.31 LOC7464012 protein CASPARIAN STRIP INTEGRITY FACTOR 1 7464012 POPTR_009G119900v3 46.06 LOC18094584 ethylene-responsive transcription factor 2 18094584 POPTR_001G154100v3 45.93 LOC18095117 cytochrome P450 87A3 18095117 POPTR_001G270500v3 45.77 LOC7463862 cytochrome P450 87A3 7463862 POPTR_001G270600v3 45.71 LOC7474965 basic endochitinase 7474965 POPTR_009G141700v3 45.70 LOC7457797 nudix hydrolase 18, mitochondrial 7457797 POPTR_008G134000v3 45.46 LOC7494600 seed biotin-containing protein SBP65 7494600 POPTR_019G090300v3 45.45 LOC18106458 heavy metal-associated isoprenylated plant protein 39 18106458 POPTR_017G147400v3 45.28 LOC18106689 kunitz trypsin inhibitor 2 18106689 POPTR_017G153200v3 45.27 LOC112328702 uncharacterized LOC112328702 112328702 45.22 LOC18102120 salicylic acid-binding protein 2 18102120 POPTR_009G107300v3 45.12 LOC7474032 CEN-like protein 1 7474032 POPTR_015G141300v3 44.83 LOC7479328 osmotin-like protein OSM34 7479328 POPTR_001G107600v3 44.83 LOC7474976 acetylserotonin O-methyltransferase 7474976 POPTR_009G139700v3 44.75 LOC7460419 protein LURP-one-related 15 7460419 POPTR_016G131400v3 44.53 LOC7465813 AT-hook motif nuclear-localized protein 24 7465813 POPTR_003G116900v3 44.33 LOC7482889 MLP-like protein 43 7482889 POPTR_008G131100v3 44.33 LOC18104932 patatin-like protein 2 18104932 POPTR_014G034000v3 44.13 LOC112326887 extensin-2-like 112326887 POPTR_001G019900v3 43.84 LOC18103101 pathogenesis-related genes transcriptional activator PTI5 18103101 POPTR_011G061700v3 43.74 LOC7461382 peroxidase 15 7461382 POPTR_003G214900v3 43.69 LOC7485450 polyphenol oxidase, chloroplastic 7485450 POPTR_011G047300v3 43.64 LOC112327227 germin-like protein subfamily 1 member 13 112327227 POPTR_004G180000v3 43.54 LOC112328218 extensin-2-like 112328218 POPTR_001G020000v3 43.51 LOC7460657 endoglucanase 12 7460657 POPTR_008G079500v3 43.45 LOC7484381 low-temperature-induced 65 kDa protein 7484381 POPTR_012G141300v3 43.45 LOC7480906 glutathione transferase GST 23 7480906 POPTR_008G174900v3 43.39 LOC7483782 cytochrome P450 734A1 7483782 POPTR_002G134500v3 43.32 LOC7490361 uncharacterized LOC7490361 7490361 POPTR_010G196400v3 43.29 LOC7487693 AT-hook motif nuclear-localized protein 19 7487693 POPTR_013G044500v3 43.07 LOC7498031 uncharacterized LOC7498031 7498031 42.99 LOC7489699 GDSL esterase/lipase 1 7489699 POPTR_013G065100v3 42.97 LOC7485893 uncharacterized LOC7485893 7485893 42.61 LOC112327209 germin-like protein subfamily 1 member 16 112327209 POPTR_004G180200v3 42.45 LOC7483295 GDSL esterase/lipase At1g74460 7483295 POPTR_012G068700v3 42.40 LOC7461573 peroxidase 45 7461573 POPTR_018G089900v3 42.36 LOC7457517 uncharacterized LOC7457517 7457517 POPTR_009G106000v3 42.16 LOC7489265 probable esterase PIR7A 7489265 POPTR_009G107500v3 42.04 LOC7485536 major allergen Pru ar 1 7485536 POPTR_011G026000v3 42.04	Upper 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC7463703 microtubule-associated protein 70-5 7463703 POPTR_006G018000v3 41.47 LOC7468619 L-type lectin-domain containing receptor kinase I.8 7468619 POPTR_009G035800v3 36.07 LOC7494473 laccase-4 7494473 POPTR_008G064000v3 35.15 LOC18106496 protein TPX2 18106496 POPTR_T059900v3 34.87 LOC18099998 dynein light chain LC6, flagellar outer arm 18099998 POPTR_006G091800v3 34.80 LOC7467100 probable GABA transporter 2 7467100 POPTR_001G093600v3 34.76 LOC7461839 oligopeptide transporter 2 7461839 POPTR_002G109300v3 34.53 LOC7491458 plasma membrane-associated cation-binding protein 1 7491458 POPTR_001G073900v3 34.32 LOC7454937 laccase-17 7454937 POPTR_006G087500v3 34.27 LOC7495835 fasciclin-like arabinogalactan protein 12 7495835 POPTR_001G320800v3 33.33 LOC18103191 uncharacterized LOC18103191 18103191 33.22 LOC112328687 uncharacterized LOC112328687 112328687 32.77 LOC7494613 probable carotenoid cleavage dioxygenase 4, chloroplastic 7494613 POPTR_019G093400v3 31.77 LOC7483653 E3 ubiquitin-protein ligase At4g11680 7483653 POPTR_011G094800v3 31.70 LOC7471179 protein NRT1/ PTR FAMILY 4.2 7471179 POPTR_002G249100v3 31.70 LOC18094569 pelargonidin 3-O-(6-caffeoylglucoside) 5-O-(6-O-malonylglucoside) 4'''-malonyltransferase 18094569 POPTR_001G152500v3 31.61 LOC7494563 protein trichome birefringence-like 19 7494563 POPTR_004G105600v3 31.34 LOC7474082 microtubule-associated protein 70-5 7474082 POPTR_016G006900v3 31.20 LOC7474685 protein LURP-one-related 12 7474685 POPTR_006G067000v3 31.09 LOC7496936 SPX domain-containing membrane protein At4g22990 7496936 POPTR_014G078000v3 30.93 LOC7475075 laccase-2 7475075 POPTR_001G184300v3 30.89 LOC7473193 transcription factor HBI1 7473193 POPTR_007G023600v3 30.72 LOC18094393 protein ODORANT1 18094393 POPTR_001G118800v3 30.46 LOC18111132 glucuronoxylan 4-O-methyltransferase 1 18111132 30.41 LOC18102212 laccase-2 18102212 POPTR_009G156800v3 30.30 LOC7460060 glucan endo-1,3-beta-glucosidase 14 7460060 POPTR_009G163700v3 30.20 LOC18094088 bifunctional pinoresinol-lariciresinol reductase 2 18094088 POPTR_001G133200v3 29.89 LOC7486803 NAC domain-containing protein 43 7486803 POPTR_014G104800v3 29.83 LOC7466052 laccase-4 7466052 POPTR_016G112000v3 29.54 LOC7492393 galactinol synthase 1 7492393 POPTR_010G042000v3 29.43 LOC112326964 uncharacterized LOC112326964 112326964 29.38 LOC7489682 E3 ubiquitin-protein ligase SIRP1 7489682 POPTR_013G060500v3 29.37 LOC7490852 beta-glucuronosyltransferase GlcAT14A 7490852 POPTR_008G006500v3 29.37 LOC7493878 RING-H2 finger protein ATL52 7493878 POPTR_013G073500v3 29.36 LOC7487740 NAC domain-containing protein 43 7487740 POPTR_002G178700v3 29.30 LOC7455257 metalloendoproteinase 2-MMP 7455257 POPTR_019G073400v3 29.08 LOC18102210 laccase-2 18102210 POPTR_009G156600v3 29.08 LOC7468684 CBL-interacting serine/threonine-protein kinase 25 7468684 POPTR_006G263500v3 28.61 LOC18104918 uncharacterized LOC18104918 18104918 POPTR_014G032300v3 28.60 LOC7465150 zinc finger CCCH domain-containing protein 56 7465150 POPTR_001G258400v3 28.55 LOC7467609 probable beta-1,4-xylosyltransferase IRX9 7467609 POPTR_016G086400v3 28.45 LOC7458573 cysteine-rich receptor-like protein kinase 10 7458573 POPTR_004G024100v3 28.38 LOC7475190 fasciclin-like arabinogalactan protein 12 7475190 POPTR_015G013300v3 28.37 LOC7461337 kinesin-like protein KIN-14T 7461337 28.33 LOC7467861 1-aminocyclopropane-1-carboxylate oxidase 5 7467861 POPTR_002G078600v3 28.14 LOC7472295 O-fucosyltransferase 8 7472295 POPTR_011G068300v3 28.12 LOC7496525 probable beta-1,4-xylosyltransferase IRX10 7496525 POPTR_003G162000v3 28.05 LOC18101343 uncharacterized LOC18101343 18101343 POPTR_008G030200v3 27.99 LOC7477065 uncharacterized LOC7477065 7477065 POPTR_010G052100v3 27.89 LOC7495213 uncharacterized LOC7495213 7495213 POPTR_014G119900v3 27.83 LOC18100114 myosin-11 18100114 POPTR_006G120400v3 27.83 LOC7482638 uncharacterized LOC7482638 7482638 POPTR_016G006200v3 27.70 LOC7481523 laccase-2 7481523 POPTR_009G034500v3 27.68 LOC7457267 laccase-4 7457267 POPTR_010G193100v3 27.56 LOC18095407 probable xyloglucan galactosyltransferase GT17 18095407 POPTR_001G382200v3 27.47 LOC7488157 uncharacterized LOC7488157 7488157 POPTR_009G024700v3 27.38 LOC7495847 probable inorganic phosphate transporter 1-5 7495847 POPTR_001G318500v3 27.35 LOC7483772 probable galacturonosyltransferase-like 1 7483772 POPTR_002G132900v3 27.24 LOC18100226 probable beta-1,4-xylosyltransferase IRX9 18100226 POPTR_006G131000v3 27.18 LOC7462100 laccase-12 7462100 POPTR_008G073700v3 27.17 LOC18101650 receptor-like protein 1 18101650 POPTR_001G064600v3 27.02 LOC7464268 fasciclin-like arabinogalactan protein 12 7464268 26.95 LOC7468582 laccase-4 7468582 POPTR_009G042500v3 26.84 LOC7460461 uncharacterized LOC7460461 7460461 POPTR_002G195400v3 26.81 LOC7468487 probable pectinesterase/pectinesterase inhibitor 35 7468487 POPTR_014G149700v3 26.80 LOC7457387 protein trichome birefringence-like 26 7457387 POPTR_002G168400v3 26.74 LOC18101485 DNA-3-methyladenine glycosylase 1 18101485 POPTR_008G112300v3 26.72 LOC7463299 fasciclin-like arabinogalactan protein 12 7463299 POPTR_009G012100v3 26.58 LOC18097764 ferrochelatase-2, chloroplastic 18097764 POPTR_004G138400v3 26.54 LOC18095892 probable galacturonosyltransferase 12 18095892 POPTR_001G416800v3 26.49 LOC112325065 uncharacterized LOC112325065 112325065 26.41 LOC7498200 uncharacterized LOC7498200 7498200 POPTR_008G092700v3 26.40 LOC7463651 uncharacterized LOC7463651 7463651 POPTR_006G005600v3 26.32 LOC18101659 receptor-like protein 15 18101659 POPTR_001G063900v3 26.32 LOC7470925 probable galacturonosyltransferase 12 7470925 POPTR_011G132600v3 26.32 LOC7466087 protein trichome birefringence-like 3 7466087 POPTR_016G119100v3 26.23 LOC18107084 probable sucrose-phosphate synthase 3 18107084 POPTR_017G057800v3 26.22 LOC18103099 rac-like GTP-binding protein RAC13 18103099 POPTR_011G061500v3 26.21 LOC7462153 uncharacterized LOC7462153 7462153 POPTR_008G084100v3 26.15 LOC7470198 cellulose synthase A catalytic subunit 8 [UDP-forming] 7470198 POPTR_004G059600v3 26.12 LOC7464516 auxin-responsive protein SAUR32 7464516 POPTR_015G006800v3 26.06 LOC7489313 NDR1/HIN1-like protein 1 7489313 POPTR_009G019600v3 25.97 LOC112328980 uncharacterized LOC112328980 112328980 POPTR_001G232200v3 25.92 LOC7476331 O-fucosyltransferase 8 7476331 POPTR_004G058900v3 25.87 LOC7457176 sugar transport protein 10 7457176 POPTR_007G073800v3 25.85 LOC7466778 filament-like plant protein 3 7466778 POPTR_007G098500v3 25.71 LOC7464786 uncharacterized LOC7464786 7464786 25.66 LOC18095010 uncharacterized LOC18095010 18095010 POPTR_001G231600v3 25.63 LOC7453595 CRIB domain-containing protein RIC4 7453595 POPTR_019G053300v3 25.61 LOC18096240 uncharacterized LOC18096240 18096240 25.58 LOC7496398 fasciclin-like arabinogalactan protein 12 7496398 25.56 LOC7466250 probable serine/threonine-protein kinase WNK5 7466250 25.55 LOC18097720 uncharacterized LOC18097720 18097720 POPTR_004G126800v3 25.51 LOC18104206 LOB domain-containing protein 15 18104206 POPTR_013G081200v3 25.49 LOC7478054 remorin 7478054 POPTR_001G107000v3 25.48 LOC7470910 uncharacterized LOC7470910 7470910 POPTR_011G130400v3 25.44 LOC7487537 uncharacterized LOC7487537 7487537 POPTR_001G366500v3 25.41 LOC7456301 sugar transport protein 10 7456301 POPTR_007G073700v3 25.40 LOC18094154 RING-H2 finger protein ATL29 18094154 POPTR_001G140900v3 25.38 LOC7474829 uncharacterized LOC7474829 7474829 POPTR_015G036800v3 25.36	Upper 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC7483980 18 kDa seed maturation protein 7483980 POPTR_016G046400v3 49.54 LOC18105360 ATP synthase subunit a 18105360 POPTR_014G168000v3 49.23 LOC18106132 11 kDa late embryogenesis abundant protein 18106132 POPTR_T111300v3 48.70 LOC112323708 small nucleolar RNA U3 112323708 47.83 LOC112327602 uncharacterized LOC112327602 112327602 47.60 LOC18104089 U1 spliceosomal RNA 18104089 47.33 LOC112323706 small nucleolar RNA U3 112323706 46.13 LOC112327719 U1 spliceosomal RNA 112327719 45.67 LOC112326599 uncharacterized LOC112326599 112326599 45.38 LOC7484381 low-temperature-induced 65 kDa protein 7484381 POPTR_012G141300v3 43.85 rps7 ribosomal protein S7 4929762 Poptr_cp093 43.54 psbE photosystem II protein V 4929687 Poptr_cp040 43.47 LOC112323707 small nucleolar RNA U3 112323707 43.34 rps7 ribosomal protein S7 4929722 Poptr_cp070 43.31 LOC112329032 U1 spliceosomal RNA 112329032 43.30 psbJ photosystem II protein J 4929684 Poptr_cp037 43.26 LOC112327851 uncharacterized LOC112327851 112327851 43.09 LOC112323709 small nucleolar RNA U3 112323709 43.06 petN cytochrome b6/f complex subunit VIII 4929647 Poptr_cp013 42.75 clpP ATP-dependent Clp protease proteolytic subunit 4929698 Poptr_cp048 42.73 psbA photosystem II protein D1 4929629 Poptr_cp001 42.65 LOC112327722 U1 spliceosomal RNA 112327722 42.48 LOC18096120 CRIB domain-containing protein RIC6 18096120 POPTR_002G035500v3 42.14 Poptr_cpR019 tRNA-Val 4929673 Poptr_cpR019 41.41 ndhB NADH dehydrogenase subunit 2 4929721 Poptr_cp069 41.21 psbF photosystem II protein VI 4929686 Poptr_cp039 41.19 ndhB NADH dehydrogenase subunit 2 4929763 Poptr_cp094 41.14 LOC112325900 U1 spliceosomal RNA 112325900 41.06 LOC112327826 uncharacterized LOC112327826 112327826 40.89 rps12 ribosomal protein S12 4929696 Poptr_cp091 40.64 rps12 ribosomal protein S12 4929628 Poptr_cp071 40.63 LOC112327718 U1 spliceosomal RNA 112327718 40.54 trnK tRNA-Lys 4929630 Poptr_cpR002 40.49 psbK photosystem II protein K 4929633 Poptr_cp003 40.32 Poptr_cp018 hypothetical protein 4929657 Poptr_cp018 40.30 LOC112325895 U1 spliceosomal RNA 112325895 40.21 LOC112325374 U1 spliceosomal RNA 112325374 40.11 LOC112328703 U1 spliceosomal RNA 112328703 39.99 cemA envelope membrane protein 4929682 Poptr_cp035 39.81 LOC112324390 U1 spliceosomal RNA 112324390 39.60 rpl33 ribosomal protein L33 4929693 Poptr_cp044 39.54 atpE ATP synthase CF1 epsilon subunit 4929675 Poptr_cp028 39.54 LOC112326534 uncharacterized LOC112326534 112326534 39.22 LOC112323922 U1 spliceosomal RNA 112323922 39.18 atpB ATP synthase CF1 beta subunit 4929676 Poptr_cp029 38.38 LOC112323789 ribulose bisphosphate carboxylase large chain 112323789 38.33 psbL photosystem II protein L 4929685 Poptr_cp038 38.15 LOC7496123 zeatin O-glucosyltransferase 7496123 POPTR_006G048200v3 38.01 ndhK NADH dehydrogenase subunit K 4929671 Poptr_cp026 37.92 ndhE NADH dehydrogenase subunit 4L 4929742 Poptr_cp081 37.88 rps18 ribosomal protein S18 4929694 Poptr_cp045 37.87 psaJ photosystem I subunit IX 4929692 Poptr_cp043 37.84 LOC7468341 beta-carotene hydroxylase 2, chloroplastic 7468341 POPTR_004G074000v3 37.75 Poptr_cpR012 tRNA-Ser 4929656 Poptr_cpR012 37.68 LOC112328712 U1 spliceosomal RNA 112328712 37.59 ycf4 photosystem I assembly protein Ycf4 4929681 Poptr_cp034 37.46 LOC7463139 probable WRKY transcription factor 43 7463139 POPTR_015G099200v3 37.44 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit 4929677 Poptr_cp030 37.36 rpoC2 RNA polymerase beta'' subunit 4929643 Poptr_cp010 37.26 LOC7493197 chalcone synthase 1 7493197 POPTR_003G176700v3 37.19 rpoC1 RNA polymerase beta' subunit 4929644 Poptr_cp011 37.14 ndhG NADH dehydrogenase subunit 6 4929743 Poptr_cp082 37.09 psaA photosystem I P700 chlorophyll a apoprotein A1 4929663 Poptr_cp022 36.99 ycf2 Ycf2 4929717 Poptr_cp066 36.96 petA cytochrome f 4929683 Poptr_cp036 36.93 LOC112329051 small nucleolar RNA snoR143 112329051 36.88 psaB photosystem I P700 chlorophyll a apoprotein A2 4929662 Poptr_cp021 36.74 LOC112323790 uncharacterized LOC112323790 112323790 36.63 ycf2 Ycf2 4929768 Poptr_cp098 36.60 LOC7471498 glucose and ribitol dehydrogenase 7471498 POPTR_008G149200v3 36.56 rps19 ribosomal protein S19 4929713 Poptr_cp063 36.49 LOC112323927 small nucleolar RNA snoR86 112323927 36.42 ycf3 photosystem I assembly protein Ycf3 4929664 Poptr_cp023 36.40 accD acetyl-CoA carboxylase beta subunit 4929679 Poptr_cp032 36.32 psaC photosystem I subunit VII 4929741 Poptr_cp080 36.23 LOC112323822 uncharacterized LOC112323822 112323822 POPTR_013G142000v3 35.89 rps19 ribosomal protein S19 4929772 Poptr_cp101 35.87 psaI photosystem I subunit VIII 4929680 Poptr_cp033 35.67 ccsA CcsA 4929739 Poptr_cp078 35.60 LOC112323823 DNA-directed RNA polymerase subunit beta-like 112323823 35.59 rpl2 ribosomal protein L2 4929714 Poptr_cp064 35.57 rpl2 ribosomal protein L2 4929771 Poptr_cp100 35.47 ndhI NADH dehydrogenase subunit I 4929744 Poptr_cp083 35.46 ndhH NADH dehydrogenase subunit 7 4929746 Poptr_cp085 35.31 rpl20 ribosomal protein L20 4929695 Poptr_cp046 35.25 petD cytochrome b6/f complex subunit IV 4929704 Poptr_cp054 35.14 ndhC NADH dehydrogenase subunit 3 4929672 Poptr_cp027 35.07 rpoA RNA polymerase alpha subunit 4929705 Poptr_cp055 35.06 Poptr_cpR017 tRNA-Leu 4929668 Poptr_cpR017 34.97 rps4 ribosomal protein S4 4929666 Poptr_cp024 34.92 LOC7454691 malate synthase, glyoxysomal 7454691 POPTR_015G092000v3 34.76 rps14 ribosomal protein S14 4929661 Poptr_cp020 34.65 Poptr_cpR005 tRNA-Gly 4929636 Poptr_cpR005 34.59 ndhJ NADH dehydrogenase subunit J 4929670 Poptr_cp025 34.47 rps3 ribosomal protein S3 4929711 Poptr_cp061 34.29 rpl16 ribosomal protein L16 4929710 Poptr_cp060 34.25 psbH photosystem II protein H 4929702 Poptr_cp052 34.16 LOC112323884 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic 112323884 POPTR_013G074800v3 33.92 rpoB RNA polymerase beta subunit 4929645 Poptr_cp012 33.69 atpI ATP synthase CF0 A subunit 4929641 Poptr_cp008 33.69	Upper 100 Genes Symbol Function* Entrez Gene ID* Other ID PC atpE ATP synthase CF1 epsilon subunit 4929675 Poptr_cp028 47.11 LOC18109877 probable RNA-dependent RNA polymerase 1 18109877 POPTR_010G105200v3 44.10 atpB ATP synthase CF1 beta subunit 4929676 Poptr_cp029 42.83 ndhB NADH dehydrogenase subunit 2 4929721 Poptr_cp069 42.32 ndhH NADH dehydrogenase subunit 7 4929746 Poptr_cp085 41.70 LOC112323789 ribulose bisphosphate carboxylase large chain 112323789 40.59 ndhB NADH dehydrogenase subunit 2 4929763 Poptr_cp094 40.47 psbJ photosystem II protein J 4929684 Poptr_cp037 40.41 clpP ATP-dependent Clp protease proteolytic subunit 4929698 Poptr_cp048 40.40 rps12 ribosomal protein S12 4929696 Poptr_cp091 40.28 trnA tRNA-Ala 4929755 Poptr_cpR040 40.28 psbE photosystem II protein V 4929687 Poptr_cp040 40.25 rps7 ribosomal protein S7 4929762 Poptr_cp093 40.18 rps7 ribosomal protein S7 4929722 Poptr_cp070 40.10 psbL photosystem II protein L 4929685 Poptr_cp038 39.73 LOC7463760 flavonoid 3'-monooxygenase 7463760 POPTR_018G051300v3 39.60 rpoA RNA polymerase alpha subunit 4929705 Poptr_cp055 39.51 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit 4929677 Poptr_cp030 39.23 trnA tRNA-Ala 4929729 Poptr_cpR028 39.15 LOC112323790 uncharacterized LOC112323790 112323790 38.85 rps12 ribosomal protein S12 4929628 Poptr_cp071 38.68 Poptr_cp018 hypothetical protein 4929657 Poptr_cp018 38.67 psaB photosystem I P700 chlorophyll a apoprotein A2 4929662 Poptr_cp021 38.59 Poptr_cpR027 tRNA-Ile 4929727 Poptr_cpR027 38.52 ndhK NADH dehydrogenase subunit K 4929671 Poptr_cp026 38.44 ycf4 photosystem I assembly protein Ycf4 4929681 Poptr_cp034 38.39 psbF photosystem II protein VI 4929686 Poptr_cp039 38.36 LOC7460537 cytochrome P450 78A5 7460537 POPTR_001G054800v3 38.22 Poptr_cpR012 tRNA-Ser 4929656 Poptr_cpR012 38.03 Poptr_cpR041 tRNA-Ile 4929756 Poptr_cpR041 37.64 rps2 ribosomal protein S2 4929642 Poptr_cp009 37.63 ycf3 photosystem I assembly protein Ycf3 4929664 Poptr_cp023 37.29 ndhA NADH dehydrogenase subunit 1 4929745 Poptr_cp084 37.17 ndhI NADH dehydrogenase subunit I 4929744 Poptr_cp083 37.15 rpl2 ribosomal protein L2 4929714 Poptr_cp064 37.07 LOC7476706 uncharacterized LOC7476706 7476706 POPTR_003G138700v3 37.04 trnK tRNA-Lys 4929630 Poptr_cpR002 36.78 cemA envelope membrane protein 4929682 Poptr_cp035 36.70 rpl33 ribosomal protein L33 4929693 Poptr_cp044 36.67 atpI ATP synthase CF0 A subunit 4929641 Poptr_cp008 36.67 ndhJ NADH dehydrogenase subunit J 4929670 Poptr_cp025 36.09 petN cytochrome b6/f complex subunit VIII 4929647 Poptr_cp013 36.05 psbA photosystem II protein D1 4929629 Poptr_cp001 36.01 rps18 ribosomal protein S18 4929694 Poptr_cp045 35.98 LOC7486494 probable LRR receptor-like serine/threonine-protein kinase At1g53440 7486494 POPTR_016G092700v3 35.97 LOC18100331 flavonoid 3'-monooxygenase 18100331 POPTR_006G141400v3 35.94 LOC7478346 flavonoid 3'-monooxygenase 7478346 POPTR_003G066600v3 35.73 LOC112323418 uncharacterized LOC112323418 112323418 35.60 petA cytochrome f 4929683 Poptr_cp036 35.50 Poptr_cpR019 tRNA-Val 4929673 Poptr_cpR019 35.35 rpoC2 RNA polymerase beta'' subunit 4929643 Poptr_cp010 35.15 petD cytochrome b6/f complex subunit IV 4929704 Poptr_cp054 34.92 ndhG NADH dehydrogenase subunit 6 4929743 Poptr_cp082 34.85 rpoC1 RNA polymerase beta' subunit 4929644 Poptr_cp011 34.69 ndhE NADH dehydrogenase subunit 4L 4929742 Poptr_cp081 34.55 psbD photosystem II protein D2 4929654 Poptr_cp016 34.36 LOC7471660 flavonoid 3'-monooxygenase 7471660 POPTR_003G066800v3 34.34 psaI photosystem I subunit VIII 4929680 Poptr_cp033 34.28 psaC photosystem I subunit VII 4929741 Poptr_cp080 34.13 LOC112323823 DNA-directed RNA polymerase subunit beta-like 112323823 33.98 rpl20 ribosomal protein L20 4929695 Poptr_cp046 33.87 LOC7473878 protein DMP10 7473878 POPTR_013G027200v3 33.84 psaA photosystem I P700 chlorophyll a apoprotein A1 4929663 Poptr_cp022 33.79 rps11 ribosomal protein S11 4929706 Poptr_cp056 33.74 rps4 ribosomal protein S4 4929666 Poptr_cp024 33.70 rpl16 ribosomal protein L16 4929710 Poptr_cp060 33.62 ndhD NADH dehydrogenase subunit 4 4929740 Poptr_cp079 33.51 LOC7479080 kirola 7479080 POPTR_004G020100v3 33.47 ndhC NADH dehydrogenase subunit 3 4929672 Poptr_cp027 33.44 ycf2 Ycf2 4929717 Poptr_cp066 33.22 LOC112323782 uncharacterized LOC112323782 112323782 33.18 rpl2 ribosomal protein L2 4929771 Poptr_cp100 33.15 rps3 ribosomal protein S3 4929711 Poptr_cp061 32.97 psaJ photosystem I subunit IX 4929692 Poptr_cp043 32.64 rps19 ribosomal protein S19 4929713 Poptr_cp063 32.62 rpoB RNA polymerase beta subunit 4929645 Poptr_cp012 32.56 accD acetyl-CoA carboxylase beta subunit 4929679 Poptr_cp032 32.55 LOC7467972 thaumatin-like protein 1 7467972 POPTR_001G220900v3 32.37 LOC7473251 thioredoxin H-type 2 7473251 POPTR_008G194100v3 32.34 LOC7478347 cytochrome P450 71A1 7478347 POPTR_003G066400v3 32.21 LOC7484402 probable (S)-N-methylcoclaurine 3'-hydroxylase isozyme 2 7484402 POPTR_012G136600v3 32.12 LOC112323884 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic 112323884 POPTR_013G074800v3 32.07 LOC112326158 O-acyltransferase WSD1-like 112326158 POPTR_T170200v3 32.05 LOC18108208 uncharacterized LOC18108208 18108208 POPTR_019G027000v3 31.96 LOC7461263 MLP-like protein 28 7461263 POPTR_017G051100v3 31.94 LOC7467040 cytochrome P450 78A9 7467040 POPTR_001G083900v3 31.89 LOC7455247 O-acyltransferase WSD1 7455247 POPTR_019G071000v3 31.89 LOC7479535 myb family transcription factor PHL5 7479535 POPTR_006G191000v3 31.78 LOC7465614 benzyl alcohol O-benzoyltransferase 7465614 POPTR_013G074500v3 31.75 rps14 ribosomal protein S14 4929661 Poptr_cp020 31.72 LOC7491320 monothiol glutaredoxin-S9 7491320 POPTR_014G134300v3 31.63 psbC photosystem II 44 kDa protein 4929655 Poptr_cp017 31.57 LOC7458209 aluminum-activated malate transporter 9 7458209 POPTR_003G134100v3 31.48 LOC18105360 ATP synthase subunit a 18105360 POPTR_014G168000v3 31.41 Poptr_cpR017 tRNA-Leu 4929668 Poptr_cpR017 31.31 rps19 ribosomal protein S19 4929772 Poptr_cp101 31.22 Poptr_cp087 Ycf1 4929748 Poptr_cp087 31.09 Poptr_cpR005 tRNA-Gly 4929636 Poptr_cpR005 31.02 LOC18109378 heavy metal-associated isoprenylated plant protein 30 18109378 POPTR_011G149500v3 30.63 LOC18102584 uncharacterized LOC18102584 18102584 30.46	Upper 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC7488343 lysine histidine transporter-like 6 7488343 POPTR_008G118000v3 41.00 LOC18105022 cytochrome P450 734A1 18105022 POPTR_014G043000v3 39.04 LOC7487693 AT-hook motif nuclear-localized protein 19 7487693 POPTR_013G044500v3 38.26 LOC7491394 benzyl alcohol O-benzoyltransferase 7491394 POPTR_001G447500v3 35.40 LOC7463180 nitrate reductase [NADH] 7463180 POPTR_002G088600v3 33.06 LOC7486630 probable 2-oxoglutarate-dependent dioxygenase AOP1 7486630 POPTR_001G176100v3 32.47 LOC7482262 putative beta-D-xylosidase 7482262 POPTR_010G141400v3 31.93 LOC7489277 aquaporin TIP1-3 7489277 POPTR_009G027200v3 31.47 LOC18095988 benzyl alcohol O-benzoyltransferase 18095988 POPTR_001G447400v3 30.89 LOC7474971 lysine histidine transporter-like 8 7474971 POPTR_009G140800v3 30.88 LOC7487272 tropinone reductase homolog 7487272 POPTR_006G089800v3 30.70 LOC7486629 probable 2-oxoglutarate-dependent dioxygenase AOP1 7486629 POPTR_001G176000v3 29.34 LOC18097400 beta-glucosidase 46 18097400 POPTR_004G019300v3 28.82 LOC18098406 hexose carrier protein HEX6 18098406 POPTR_004G233500v3 28.75 LOC7465813 AT-hook motif nuclear-localized protein 24 7465813 POPTR_003G116900v3 28.59 LOC18104536 trans-resveratrol di-O-methyltransferase 18104536 POPTR_013G120800v3 28.40 LOC18105965 uncharacterized LOC18105965 18105965 POPTR_015G119800v3 28.27 LOC18105079 uclacyanin-3 18105079 POPTR_014G049600v3 28.25 LOC18095430 probable LRR receptor-like serine/threonine-protein kinase At1g53430 18095430 POPTR_001G385400v3 27.45 LOC7457170 probable terpene synthase 6 7457170 POPTR_007G074400v3 27.37 LOC18099625 abscisic stress-ripening protein 3 18099625 POPTR_005G193600v3 27.14 LOC112324789 berberine bridge enzyme-like 8 112324789 POPTR_001G462400v3 26.93 LOC7492425 AT-hook motif nuclear-localized protein 20 7492425 POPTR_010G074200v3 26.85 LOC18110359 GDSL esterase/lipase At1g29670 18110359 POPTR_018G089200v3 26.53 LOC7470729 oleosin 16 kDa 7470729 POPTR_006G234900v3 26.47 LOC7473446 auxin-responsive protein IAA14 7473446 POPTR_008G161200v3 26.30 LOC7484879 (-)-isopiperitenol/(-)-carveol dehydrogenase, mitochondrial 7484879 POPTR_012G105700v3 25.99 LOC7492393 galactinol synthase 1 7492393 POPTR_010G042000v3 25.97 LOC7475953 flowering-promoting factor 1-like protein 3 7475953 POPTR_010G024500v3 25.97 LOC7497422 laccase-3 7497422 POPTR_013G152700v3 25.97 LOC7495294 alpha-farnesene synthase 7495294 POPTR_011G031800v3 25.97 LOC7482889 MLP-like protein 43 7482889 POPTR_008G131100v3 25.75 LOC18109540 alcohol dehydrogenase 18109540 POPTR_005G060200v3 25.66 LOC7468487 probable pectinesterase/pectinesterase inhibitor 35 7468487 POPTR_014G149700v3 25.60 LOC7485665 AT-hook motif nuclear-localized protein 25 7485665 POPTR_005G257200v3 25.05 LOC7489432 GDSL esterase/lipase At1g29670 7489432 POPTR_018G089400v3 25.00 LOC7496783 asparagine synthetase [glutamine-hydrolyzing] 1 7496783 POPTR_001G278400v3 24.80 LOC18108496 probable O-methyltransferase 3 18108496 POPTR_019G093000v3 24.78 LOC7461571 GDSL esterase/lipase At1g29660 7461571 POPTR_018G088600v3 24.71 LOC112324786 berberine bridge enzyme-like 8 112324786 POPTR_001G462200v3 24.47 LOC7469672 transcription factor bHLH18 7469672 POPTR_009G081400v3 24.43 LOC7478600 wall-associated receptor kinase 2 7478600 POPTR_009G154100v3 24.35 LOC7462495 phosphomethylethanolamine N-methyltransferase 7462495 POPTR_015G039000v3 24.05 LOC7465228 galactinol synthase 2 7465228 POPTR_013G005900v3 23.98 LOC7457941 ABC transporter C family member 14 7457941 POPTR_014G130500v3 23.44 LOC18105808 probable WRKY transcription factor 72 18105808 POPTR_015G064100v3 23.26 LOC7457789 probable galactinol--sucrose galactosyltransferase 2 7457789 POPTR_015G086400v3 23.16 LOC7456253 omega-hydroxypalmitate O-feruloyl transferase 7456253 POPTR_001G326300v3 22.83 LOC7458573 cysteine-rich receptor-like protein kinase 10 7458573 POPTR_004G024100v3 22.81 LOC7473898 cationic amino acid transporter 1 7473898 POPTR_013G030900v3 22.77 LOC7491869 ABC transporter B family member 2 7491869 POPTR_003G094400v3 22.76 LOC18099678 jacalin-related lectin 3 18099678 POPTR_005G232400v3 22.66 LOC7459521 glycine-rich protein 5 7459521 POPTR_002G252400v3 22.56 LOC18110643 probable LRR receptor-like serine/threonine-protein kinase At1g53440 18110643 POPTR_016G011200v3 22.54 LOC18094155 transcription factor bHLH71 18094155 POPTR_001G141100v3 22.54 LOC112329051 small nucleolar RNA snoR143 112329051 22.52 LOC7478659 protein NLP1 7478659 POPTR_001G293300v3 22.52 LOC7463780 uncharacterized LOC7463780 7463780 POPTR_018G046500v3 22.50 LOC7483951 tetraketide alpha-pyrone reductase 2 7483951 POPTR_008G120200v3 22.48 LOC18097308 miraculin 18097308 POPTR_004G000400v3 22.47 LOC7493262 putative UPF0481 protein At3g02645 7493262 POPTR_003G206500v3 22.43 LOC7474394 fatty alcohol:caffeoyl-CoA acyltransferase 7474394 POPTR_010G180000v3 22.03 LOC7489112 cannabidiolic acid synthase-like 1 7489112 POPTR_011G158100v3 21.98 LOC7465539 protein DETOXIFICATION 27 7465539 POPTR_007G010200v3 21.86 LOC7454973 laccase-7 7454973 POPTR_006G094100v3 21.84 LOC7482890 MLP-like protein 328 7482890 POPTR_008G131200v3 21.77 LOC7490956 metallothiol transferase FosB 7490956 POPTR_001G171600v3 21.76 LOC7487465 lactosylceramide 4-alpha-galactosyltransferase 7487465 POPTR_016G114200v3 21.71 LOC18096030 berberine bridge enzyme-like 8 18096030 POPTR_001G462300v3 21.67 LOC7460508 pleiotropic drug resistance protein 1 7460508 POPTR_001G048900v3 21.55 LOC18102541 U-box domain-containing protein 21 18102541 POPTR_010G103100v3 21.49 LOC7474049 uncharacterized LOC7474049 7474049 POPTR_015G144800v3 21.42 LOC7494429 beta-amyrin 28-oxidase 7494429 POPTR_013G106200v3 21.38 LOC7491938 uncharacterized LOC7491938 7491938 21.26 LOC7480605 allene oxide synthase 3 7480605 POPTR_004G149000v3 21.11 LOC18103511 berberine bridge enzyme-like 28 18103511 POPTR_011G162800v3 21.08 LOC18095476 pathogen-related protein 18095476 POPTR_001G389800v3 21.05 LOC7494330 major pollen allergen Bet v 1-D/H 7494330 POPTR_004G033000v3 20.99 LOC18099862 3,9-dihydroxypterocarpan 6A-monooxygenase 18099862 POPTR_006G057900v3 20.97 LOC7457786 cytochrome P450 71A1 7457786 POPTR_015G086000v3 20.96 LOC18110360 GDSL esterase/lipase At5g45670 18110360 POPTR_018G089300v3 20.80 LOC7485051 alpha-amylase/subtilisin inhibitor 7485051 POPTR_007G111600v3 20.74 LOC7481640 CASP-like protein 1D1 7481640 POPTR_008G205000v3 20.71 LOC18100146 transcription factor RAX2 18100146 POPTR_006G123400v3 20.68 LOC7461568 GDSL esterase/lipase At1g29670 7461568 POPTR_018G088500v3 20.62 LOC7460537 cytochrome P450 78A5 7460537 POPTR_001G054800v3 20.43 LOC7478098 AT-hook motif nuclear-localized protein 26 7478098 POPTR_001G115200v3 20.39 LOC7462863 C2 domain-containing protein At1g63220 7462863 POPTR_002G123200v3 20.34 LOC18107663 inositol oxygenase 2 18107663 POPTR_018G069700v3 20.33 LOC7462444 crocetin glucosyltransferase, chloroplastic 7462444 POPTR_002G236400v3 20.25 LOC7456243 truncated transcription factor CAULIFLOWER A 7456243 POPTR_001G328400v3 20.21 LOC7461370 phytoene synthase 2, chloroplastic 7461370 POPTR_003G218000v3 20.15 LOC7467241 branched-chain-amino-acid aminotransferase 2, chloroplastic 7467241 POPTR_002G113600v3 20.09 LOC112328218 extensin-2-like 112328218 POPTR_001G020000v3 19.96 LOC7489115 berberine bridge enzyme-like 21 7489115 POPTR_011G158500v3 19.94 LOC7469204 pathogen-related protein 7469204 POPTR_005G188400v3 19.90 LOC7495233 COBRA-like protein 7 7495233 POPTR_014G125300v3 19.88 LOC7467535 AT-hook motif nuclear-localized protein 20 7467535 POPTR_008G164500v3 19.86 LOC7494515 protein DJ-1 homolog D 7494515 POPTR_004G076000v3 19.86 LOC18095390 transcription factor TCP4 18095390 POPTR_001G375800v3 19.82	Upper 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC7467387 18.1 kDa class I heat shock protein 7467387 POPTR_009G049900v3 29.85 LOC18097975 18.1 kDa class I heat shock protein 18097975 29.64 LOC7478626 18.1 kDa class I heat shock protein 7478626 POPTR_009G148000v3 28.25 LOC7479202 23.6 kDa heat shock protein, mitochondrial 7479202 POPTR_003G109200v3 27.46 LOC18106465 heat shock protein 83 18106465 POPTR_017G146600v3 25.39 LOC18094241 heat shock 70 kDa protein 18094241 POPTR_001G042600v3 25.18 LOC7489736 mitogen-activated protein kinase kinase kinase 17 7489736 POPTR_005G139300v3 25.08 LOC7473268 luminal-binding protein 4 7473268 POPTR_013G018000v3 24.36 LOC112323309 probable glutathione S-transferase parC 112323309 POPTR_011G113400v3 24.29 LOC7476266 multiprotein-bridging factor 1c 7476266 POPTR_018G075200v3 23.18 LOC7481611 18.1 kDa class I heat shock protein 7481611 POPTR_010G175200v3 23.02 LOC7471654 phospholipase A1-Ibeta2, chloroplastic 7471654 POPTR_003G081500v3 22.43 LOC7465011 monooxygenase 2 7465011 POPTR_001G307500v3 22.38 LOC112323310 probable glutathione S-transferase parC 112323310 POPTR_011G114000v3 22.31 LOC7482152 ethylene-responsive transcription factor ERF025 7482152 POPTR_012G134000v3 22.30 LOC7488987 probable xyloglucan endotransglucosylase/hydrolase protein 23 7488987 POPTR_018G095100v3 22.29 LOC7482117 dehydration-responsive element-binding protein 1A 7482117 POPTR_012G134100v3 22.25 LOC7483109 mitogen-activated protein kinase kinase kinase 18 7483109 POPTR_007G044800v3 21.75 LOC7461592 probable xyloglucan endotransglucosylase/hydrolase protein 23 7461592 POPTR_018G095200v3 21.67 LOC7458152 probable mediator of RNA polymerase II transcription subunit 37c 7458152 POPTR_010G206600v3 21.49 LOC18109033 18.1 kDa class I heat shock protein 18109033 21.38 LOC7496429 small heat shock protein, chloroplastic 7496429 POPTR_012G022400v3 21.16 LOC18109968 probable glutathione S-transferase parC 18109968 POPTR_013G137200v3 21.09 LOC7460940 protein FAM32A-like 7460940 POPTR_005G174400v3 20.75 LOC18095192 scopoletin glucosyltransferase 18095192 POPTR_001G303000v3 20.68 LOC18110133 17.5 kDa class I heat shock protein 18110133 POPTR_009G039200v3 20.34 LOC7497047 protein TIFY 5A 7497047 POPTR_011G083900v3 20.29 LOC18100610 E3 ubiquitin-protein ligase PUB22 18100610 POPTR_006G202600v3 20.19 LOC7482481 probable calcium-binding protein CML45 7482481 POPTR_017G084800v3 19.96 LOC18097977 18.1 kDa class I heat shock protein 18097977 POPTR_004G187200v3 19.93 LOC7494528 heat shock protein 83 7494528 POPTR_004G073600v3 19.56 LOC7474533 calcium-binding protein CML37 7474533 POPTR_002G001400v3 19.20 LOC18104942 transcription factor MYB77 18104942 POPTR_014G035100v3 19.07 LOC7476686 ethylene-responsive transcription factor ERF017 7476686 POPTR_018G047300v3 18.80 LOC7464633 xyloglucan endotransglucosylase/hydrolase 2 7464633 POPTR_005G201200v3 18.64 LOC7490035 ethylene-responsive transcription factor ERF109 7490035 POPTR_009G101900v3 18.51 LOC7492280 ethylene-responsive transcription factor ERF017 7492280 POPTR_006G218200v3 18.40 LOC18102191 18.1 kDa class I heat shock protein 18102191 POPTR_009G147900v3 18.07 LOC112325022 cytochrome P450 CYP73A100-like 112325022 POPTR_018G146100v3 17.95 LOC18094242 heat shock 70 kDa protein 18094242 POPTR_001G042700v3 17.91 LOC7460976 probable receptor-like protein kinase At1g11050 7460976 POPTR_005G181800v3 17.82 LOC7494393 22.0 kDa class IV heat shock protein 7494393 POPTR_013G089200v3 17.81 LOC7467388 17.3 kDa class I heat shock protein 7467388 POPTR_009G049800v3 17.72 LOC18105079 uclacyanin-3 18105079 POPTR_014G049600v3 17.71 LOC18097788 ethylene-responsive transcription factor ERF109 18097788 POPTR_004G141200v3 17.48 LOC7484748 ABC transporter A family member 2 7484748 POPTR_012G069800v3 17.06 LOC18098378 TMV resistance protein N 18098378 POPTR_004G230000v3 16.99 LOC18098202 ubiquitin-like protein 5 18098202 POPTR_004G211600v3 16.90 LOC18108603 protein TIC 20-IV, chloroplastic 18108603 POPTR_019G105200v3 16.78 LOC18100302 ethylene-responsive transcription factor ERF017 18100302 POPTR_006G138700v3 16.77 LOC7465130 zinc finger protein ZAT12 7465130 POPTR_001G235800v3 16.76 LOC18109144 xyloglucan endotransglucosylase/hydrolase protein 15 18109144 POPTR_T180200v3 16.76 LOC18095065 18.2 kDa class I heat shock protein 18095065 POPTR_001G254700v3 16.67 LOC7471619 small heat shock protein, chloroplastic 7471619 POPTR_003G076000v3 16.58 LOC18109505 uncharacterized LOC18109505 18109505 16.55 LOC7467676 class I heat shock protein 7467676 POPTR_T125900v3 16.49 LOC7489735 mitogen-activated protein kinase kinase kinase 17 7489735 POPTR_005G139200v3 16.42 LOC7457547 scopoletin glucosyltransferase 7457547 POPTR_009G098400v3 16.28 LOC7463042 probable calcium-binding protein CML45 7463042 POPTR_004G122900v3 16.27 LOC18102104 scopoletin glucosyltransferase 18102104 16.17 LOC7478884 probable xyloglucan endotransglucosylase/hydrolase protein 23 7478884 POPTR_013G005700v3 16.14 LOC112326599 uncharacterized LOC112326599 112326599 16.13 LOC18105997 heat shock cognate protein 80 18105997 POPTR_016G003400v3 16.11 LOC112328902 CASP-like protein 4D1 112328902 POPTR_010G204700v3 16.10 LOC18102541 U-box domain-containing protein 21 18102541 POPTR_010G103100v3 16.01 LOC7473428 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 7473428 POPTR_008G157400v3 15.97 LOC7492050 scopoletin glucosyltransferase 7492050 POPTR_001G303600v3 15.85 LOC7491951 exocyst complex component EXO70H1 7491951 POPTR_006G214300v3 15.71 LOC7469201 stearoyl-[acyl-carrier-protein] 9-desaturase 6, chloroplastic 7469201 POPTR_005G187600v3 15.68 LOC7488136 zinc finger protein ZAT12 7488136 POPTR_009G027700v3 15.58 LOC7480455 dirigent protein 11 7480455 POPTR_005G100700v3 15.58 LOC7458129 ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 7458129 POPTR_010G200500v3 15.57 LOC7469820 heat shock cognate 70 kDa protein 2 7469820 POPTR_008G054000v3 15.56 LOC7473239 probable galacturonosyltransferase-like 9 7473239 POPTR_008G192600v3 15.53 LOC18105602 U-box domain-containing protein 21 18105602 POPTR_015G031000v3 15.53 LOC7485450 polyphenol oxidase, chloroplastic 7485450 POPTR_011G047300v3 15.52 LOC7458849 calcium-binding protein PBP1 7458849 POPTR_019G120600v3 15.52 LOC7455409 galactinol synthase 1 7455409 POPTR_014G116800v3 15.52 LOC112325220 protein TIC 20-IV, chloroplastic-like 112325220 POPTR_019G108800v3 15.50 LOC18108483 laccase-14 18108483 POPTR_019G088600v3 15.50 LOC7488405 10 kDa chaperonin, mitochondrial 7488405 POPTR_008G130500v3 15.47 LOC7489277 aquaporin TIP1-3 7489277 POPTR_009G027200v3 15.39 LOC18103249 calcyclin-binding protein 18103249 POPTR_011G085100v3 15.38 LOC7497418 calcium-binding protein PBP1 7497418 POPTR_013G151000v3 15.38 LOC18105148 uncharacterized LOC18105148 18105148 15.34 LOC7476868 calcium-transporting ATPase 12, plasma membrane-type 7476868 POPTR_005G215600v3 15.32 LOC7460261 cytosolic sulfotransferase 15 7460261 POPTR_003G193500v3 15.32 LOC7468486 peptidyl-prolyl cis-trans isomerase FKBP62 7468486 POPTR_014G149400v3 15.25 LOC7462237 17.9 kDa class II heat shock protein 7462237 POPTR_006G223900v3 15.24 LOC7460408 probable WRKY transcription factor 33 7460408 POPTR_016G128300v3 15.19 LOC18109174 dirigent protein 11 18109174 POPTR_T173200v3 15.17 LOC18094575 phospholipase A1-Ibeta2, chloroplastic 18094575 POPTR_001G153100v3 15.13 LOC7460943 ethylene-responsive transcription factor ERF014 7460943 POPTR_005G176000v3 15.12 LOC7492436 transcription factor bHLH92 7492436 POPTR_010G077000v3 15.10 LOC112326123 dnaJ protein ERDJ3B-like 112326123 POPTR_T165400v3 15.06 LOC7467451 laccase-14 7467451 POPTR_019G088700v3 15.06 LOC7465161 expansin-A8 7465161 POPTR_013G154700v3 15.04 LOC18107209 peroxidase 55 18107209 POPTR_017G064100v3 14.92 LOC18096973 uncharacterized LOC18096973 18096973 POPTR_003G092100v3 14.86 LOC7466408 U-box domain-containing protein 29 7466408 POPTR_002G070500v3 14.85	Upper 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC7485458 crocetin glucosyltransferase, chloroplastic 7485458 POPTR_006G055600v3 28.82 LOC7468057 probable 2-oxoglutarate-dependent dioxygenase At5g05600 7468057 POPTR_006G101100v3 27.43 LOC18099771 protein PYRICULARIA ORYZAE RESISTANCE 21 18099771 POPTR_006G019800v3 27.42 LOC18100426 bark storage protein A 18100426 POPTR_T096300v3 26.39 LOC7479600 heavy metal-associated isoprenylated plant protein 2 7479600 POPTR_006G020000v3 25.26 LOC7474945 cytochrome P450 94C1 7474945 POPTR_009G145400v3 24.73 LOC7496542 protein TIFY 9 7496542 POPTR_003G165000v3 24.64 LOC18094704 protein TIFY 10A 18094704 POPTR_001G166200v3 24.59 LOC7488765 protein LURP-one-related 15 7488765 POPTR_016G130700v3 24.58 LOC18108499 endochitinase EP3 18108499 POPTR_019G093900v3 23.96 LOC18101882 major allergen Pru ar 1 18101882 POPTR_008G212300v3 23.37 LOC7453765 carbonic anhydrase 2 7453765 POPTR_015G076000v3 22.46 LOC7475024 uncharacterized LOC7475024 7475024 POPTR_009G070200v3 22.45 LOC7485533 tryptophan synthase beta chain 1 7485533 POPTR_011G024900v3 22.44 LOC7476916 transcription factor MYB14 7476916 POPTR_005G224100v3 22.19 LOC7469347 heavy metal-associated isoprenylated plant protein 47 7469347 POPTR_014G171300v3 22.03 LOC7464613 laccase-12 7464613 POPTR_010G183500v3 21.94 LOC7483928 leucoanthocyanidin reductase 7483928 POPTR_008G116500v3 21.39 LOC7487348 uncharacterized LOC7487348 7487348 POPTR_006G105600v3 21.28 LOC7491592 steroid 5-alpha-reductase DET2 7491592 POPTR_010G245200v3 21.09 LOC18100012 uncharacterized LOC18100012 18100012 POPTR_006G105500v3 21.03 LOC7474724 blue copper protein 7474724 POPTR_006G067300v3 20.96 LOC7455410 transcription factor MYB108 7455410 POPTR_014G117000v3 20.67 LOC7472498 probable calcium-binding protein CML43 7472498 POPTR_016G142000v3 20.66 LOC7497047 protein TIFY 5A 7497047 POPTR_011G083900v3 20.65 LOC18109326 acidic endochitinase WIN6.2B-like 18109326 POPTR_T175300v3 20.54 LOC112328250 LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.8 112328250 POPTR_007G141400v3 20.34 LOC7485485 probable xyloglucan endotransglucosylase/hydrolase protein 23 7485485 POPTR_006G071200v3 20.33 LOC7486336 cytochrome P450 78A7 7486336 POPTR_005G084500v3 20.26 LOC18106165 glucan endo-1,3-beta-glucosidase, basic isoform 18106165 POPTR_016G057400v3 20.06 LOC18105371 heavy metal-associated isoprenylated plant protein 16 18105371 POPTR_014G171500v3 20.01 LOC7492242 NAC domain-containing protein 90 7492242 POPTR_006G209200v3 19.86 LOC7453729 UDP-glycosyltransferase 82A1 7453729 POPTR_016G019400v3 19.85 LOC7456842 uncharacterized LOC7456842 7456842 POPTR_004G095200v3 19.76 LOC7465099 abscisic acid 8'-hydroxylase 2 7465099 POPTR_001G242600v3 19.72 LOC7459061 MLP-like protein 423 7459061 POPTR_010G096000v3 19.67 LOC7486082 endogenous alpha-amylase/subtilisin inhibitor 7486082 POPTR_007G111800v3 19.63 LOC7474964 acidic endochitinase WIN6-like 7474964 19.59 LOC7480140 salicylate carboxymethyltransferase 7480140 POPTR_007G021300v3 19.50 LOC18099774 protein PYRICULARIA ORYZAE RESISTANCE 21 18099774 POPTR_006G020100v3 19.31 LOC7469630 zinc finger protein ZAT10 7469630 POPTR_009G089400v3 19.25 LOC7490918 dehydration-responsive element-binding protein 1E 7490918 POPTR_001G110700v3 19.05 LOC7472714 probable WRKY transcription factor 41 7472714 POPTR_001G092900v3 18.97 LOC7466874 lipase-like PAD4 7466874 POPTR_005G068700v3 18.94 LOC18097932 uncharacterized LOC18097932 18097932 POPTR_T020000v3 18.94 LOC7455199 linamarin synthase 2 7455199 POPTR_005G073800v3 18.94 LOC7486851 protein ZINC INDUCED FACILITATOR-LIKE 1 7486851 POPTR_008G010600v3 18.88 LOC18104880 uncharacterized LOC18104880 18104880 POPTR_014G027800v3 18.83 LOC7493198 chalcone synthase 1 7493198 POPTR_003G176800v3 18.79 LOC7472358 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 7472358 POPTR_011G112400v3 18.75 LOC7494801 very-long-chain 3-oxoacyl-CoA reductase-like protein At1g24470 7494801 POPTR_008G181600v3 18.74 LOC7458264 cytochrome b561 and DOMON domain-containing protein At5g35735 7458264 POPTR_002G222700v3 18.63 LOC7487673 pathogenesis-related protein PR-4 7487673 POPTR_013G041700v3 18.62 LOC18099243 AAA-ATPase At1g43910 18099243 POPTR_005G119200v3 18.56 LOC7478075 dehydration-responsive element-binding protein 1E 7478075 POPTR_001G110800v3 18.55 LOC18102943 (3S,6E)-nerolidol synthase 1 18102943 POPTR_011G032300v3 18.52 LOC18099144 probable aquaporin PIP2-8 18099144 POPTR_005G109200v3 18.52 LOC7463394 protein ECERIFERUM 1 7463394 POPTR_014G180300v3 18.50 LOC7454262 cytochrome P450 81E8 7454262 POPTR_008G205200v3 18.46 LOC7479547 class V chitinase 7479547 POPTR_006G188300v3 18.39 LOC7486795 homeobox-leucine zipper protein ATHB-7 7486795 POPTR_014G103000v3 18.25 LOC18100610 E3 ubiquitin-protein ligase PUB22 18100610 POPTR_006G202600v3 18.18 LOC7487324 probable 2-oxoglutarate-dependent dioxygenase At5g05600 7487324 POPTR_006G101200v3 18.01 LOC18109174 dirigent protein 11 18109174 POPTR_T173200v3 17.82 LOC7496928 probable isoaspartyl peptidase/L-asparaginase 2 7496928 POPTR_014G022900v3 17.80 LOC7492436 transcription factor bHLH92 7492436 POPTR_010G077000v3 17.77 LOC7475677 protein TIFY 10b 7475677 POPTR_003G068900v3 17.76 LOC7480438 uncharacterized protein At1g24485 7480438 POPTR_005G043700v3 17.76 LOC18104618 transcription factor bHLH162 18104618 POPTR_013G129800v3 17.74 LOC7496976 cytochrome P450 86A8 7496976 POPTR_014G085800v3 17.73 LOC7480455 dirigent protein 11 7480455 POPTR_005G100700v3 17.66 LOC18096340 cucumber peeling cupredoxin 18096340 POPTR_002G150600v3 17.66 LOC7467474 endochitinase PR4 7467474 POPTR_019G093800v3 17.62 LOC7475643 protein SAR DEFICIENT 1 7475643 POPTR_015G045300v3 17.60 LOC18094037 nudix hydrolase 2 18094037 POPTR_001G127700v3 17.60 LOC7460261 cytosolic sulfotransferase 15 7460261 POPTR_003G193500v3 17.58 LOC18094938 thaumatin-like protein 1 18094938 POPTR_001G221800v3 17.58 LOC7496089 putative methyltransferase DDB_G0268948 7496089 POPTR_006G042200v3 17.56 LOC18094937 thaumatin-like protein 1 18094937 POPTR_001G221900v3 17.53 LOC7475604 probable protein phosphatase 2C 51 7475604 POPTR_T137100v3 17.46 LOC7458849 calcium-binding protein PBP1 7458849 POPTR_019G120600v3 17.38 LOC7463786 protein IQ-DOMAIN 1 7463786 POPTR_011G096500v3 17.37 LOC7493197 chalcone synthase 1 7493197 POPTR_003G176700v3 17.29 LOC112325255 uncharacterized LOC112325255 112325255 17.26 LOC18104080 pathogenesis-related protein PR-4 18104080 POPTR_013G041900v3 17.25 LOC7477665 cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1 7477665 POPTR_005G237600v3 17.24 LOC7475030 flavonoid 3',5'-hydroxylase 1 7475030 POPTR_009G069100v3 17.14 LOC7453762 transcription factor bHLH162 7453762 POPTR_015G074500v3 17.14 LOC112324315 probable protein phosphatase 2C 51 112324315 POPTR_015G018800v3 17.08 LOC7455741 transmembrane protein 45B 7455741 POPTR_001G008900v3 17.07 LOC7460419 protein LURP-one-related 15 7460419 POPTR_016G131400v3 16.89 LOC7463591 transmembrane protein 45B 7463591 POPTR_003G216600v3 16.86 LOC18099769 protein PYRICULARIA ORYZAE RESISTANCE 21 18099769 POPTR_006G019500v3 16.84 LOC7453982 trehalose-phosphate phosphatase A 7453982 POPTR_012G126100v3 16.72 LOC7462100 laccase-12 7462100 POPTR_008G073700v3 16.69 LOC18098085 F-box protein At2g27310 18098085 POPTR_004G199300v3 16.68 LOC18104574 cytochrome P450 82G1 18104574 POPTR_013G125300v3 16.66 LOC18111206 probable WRKY transcription factor 31 18111206 POPTR_011G007800v3 16.54 LOC7485216 probable WRKY transcription factor 30 7485216 POPTR_012G031700v3 16.54 LOC7465052 probable indole-3-acetic acid-amido synthetase GH3.1 7465052 POPTR_001G298300v3 16.52	Upper 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC7472135 chaperone protein dnaJ 11, chloroplastic 7472135 POPTR_009G131800v3 33.14 LOC7465161 expansin-A8 7465161 POPTR_013G154700v3 27.84 LOC18100191 uncharacterized LOC18100191 18100191 POPTR_006G127900v3 25.95 LOC7485277 WAT1-related protein At4g30420 7485277 POPTR_006G177700v3 24.48 LOC7477401 uncharacterized LOC7477401 7477401 POPTR_004G044300v3 23.23 LOC7484381 low-temperature-induced 65 kDa protein 7484381 POPTR_012G141300v3 22.10 LOC7460859 dynein light chain 2, cytoplasmic 7460859 POPTR_011G126400v3 21.87 LOC7493257 DNA damage-repair/toleration protein DRT100 7493257 POPTR_003G207000v3 21.80 LOC7458168 acid beta-fructofuranosidase 2, vacuolar 7458168 POPTR_003G126300v3 21.42 LOC18109673 myb family transcription factor PHL5 18109673 POPTR_016G048000v3 21.38 LOC7483567 dormancy-associated protein homolog 4 7483567 POPTR_003G070500v3 21.19 LOC18105645 G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 18105645 POPTR_015G026300v3 21.13 LOC7465099 abscisic acid 8'-hydroxylase 2 7465099 POPTR_001G242600v3 20.96 LOC112324786 berberine bridge enzyme-like 8 112324786 POPTR_001G462200v3 20.92 LOC7483980 18 kDa seed maturation protein 7483980 POPTR_016G046400v3 20.84 LOC7482262 putative beta-D-xylosidase 7482262 POPTR_010G141400v3 20.82 LOC7490642 chaperone protein dnaJ 11, chloroplastic 7490642 POPTR_002G020700v3 20.56 LOC18103031 uncharacterized LOC18103031 18103031 POPTR_011G053300v3 20.29 LOC7470449 uncharacterized LOC7470449 7470449 POPTR_004G184700v3 20.00 LOC18096313 J domain-containing protein required for chloroplast accumulation response 1 18096313 POPTR_002G134300v3 19.52 LOC7464039 organ-specific protein S2 7464039 POPTR_009G114700v3 19.46 LOC7475591 uncharacterized LOC7475591 7475591 POPTR_010G124700v3 19.38 LOC7465524 probable trehalose-phosphate phosphatase F 7465524 POPTR_003G112400v3 19.33 LOC7462135 uncharacterized LOC7462135 7462135 POPTR_008G081000v3 19.08 LOC18106132 11 kDa late embryogenesis abundant protein 18106132 POPTR_T111300v3 19.07 LOC7453636 chaperone protein dnaJ 11, chloroplastic 7453636 POPTR_004G172300v3 19.03 LOC7470587 GDSL esterase/lipase APG 7470587 POPTR_001G191400v3 19.01 LOC7488985 xyloglucan endotransglucosylase/hydrolase protein 24 7488985 POPTR_018G094900v3 18.99 LOC7479211 protein NRT1/ PTR FAMILY 6.3 7479211 POPTR_003G111500v3 18.82 LOC7489155 early nodulin-like protein 1 7489155 POPTR_006G264600v3 18.78 LOC18094096 phosphoribulokinase, chloroplastic 18094096 POPTR_001G134000v3 18.76 LOC18095622 NAC domain-containing protein 72 18095622 POPTR_001G404100v3 18.71 LOC7488158 uncharacterized LOC7488158 7488158 POPTR_009G024500v3 18.67 LOC7468341 beta-carotene hydroxylase 2, chloroplastic 7468341 POPTR_004G074000v3 18.49 LOC7489277 aquaporin TIP1-3 7489277 POPTR_009G027200v3 18.31 LOC18094569 pelargonidin 3-O-(6-caffeoylglucoside) 5-O-(6-O-malonylglucoside) 4'''-malonyltransferase 18094569 POPTR_001G152500v3 18.19 LOC7462607 protein RALF-like 34 7462607 POPTR_007G044700v3 18.16 LOC18107663 inositol oxygenase 2 18107663 POPTR_018G069700v3 18.05 LOC7458131 glycerol-3-phosphate acyltransferase 5 7458131 POPTR_010G201200v3 18.02 LOC7473446 auxin-responsive protein IAA14 7473446 POPTR_008G161200v3 17.96 LOC7474964 acidic endochitinase WIN6-like 7474964 17.94 LOC7475024 uncharacterized LOC7475024 7475024 POPTR_009G070200v3 17.91 LOC7496004 annexin D4 7496004 POPTR_001G024900v3 17.82 LOC7457723 U-box domain-containing protein 19 7457723 POPTR_015G074200v3 17.79 LOC7493180 ubiquinol oxidase 2, mitochondrial 7493180 POPTR_012G001600v3 17.75 LOC7494389 uncharacterized LOC7494389 7494389 POPTR_013G090200v3 17.61 LOC7478518 protein GAST1 7478518 POPTR_001G254100v3 17.54 LOC18095659 dynein light chain 1, cytoplasmic 18095659 POPTR_001G407900v3 17.45 LOC7490956 metallothiol transferase FosB 7490956 POPTR_001G171600v3 17.43 LOC7494287 auxin-responsive protein SAUR21 7494287 POPTR_009G126300v3 17.39 LOC7496907 peroxidase 64 7496907 POPTR_002G018000v3 17.33 LOC7497378 expansin-B3 7497378 POPTR_013G134300v3 17.33 LOC7469655 uncharacterized LOC7469655 7469655 POPTR_009G084400v3 17.27 LOC7497818 uncharacterized LOC7497818 7497818 POPTR_003G135400v3 17.24 LOC7473436 uncharacterized LOC7473436 7473436 POPTR_008G159200v3 17.16 LOC18096890 expansin-like B1 18096890 POPTR_003G083200v3 17.15 LOC7469857 syntaxin-related protein KNOLLE 7469857 POPTR_019G030800v3 17.10 LOC7489643 syntaxin-related protein KNOLLE 7489643 POPTR_013G053200v3 17.01 LOC7470435 endochitinase 2 7470435 POPTR_004G182000v3 16.97 LOC7474391 uncharacterized LOC7474391 7474391 POPTR_010G179300v3 16.84 LOC7472358 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 7472358 POPTR_011G112400v3 16.80 LOC18104448 ABC transporter G family member 25 18104448 POPTR_013G111900v3 16.79 LOC7481607 organic cation/carnitine transporter 3 7481607 POPTR_010G174300v3 16.75 LOC7495509 peroxidase 72 7495509 POPTR_007G019300v3 16.70 LOC7495209 stachyose synthase 7495209 POPTR_014G118400v3 16.68 LOC7472467 uncharacterized LOC7472467 7472467 POPTR_008G078000v3 16.60 LOC7492393 galactinol synthase 1 7492393 POPTR_010G042000v3 16.49 LOC18108623 uncharacterized LOC18108623 18108623 POPTR_019G116500v3 16.45 LOC7464498 heavy metal-associated isoprenylated plant protein 9 7464498 POPTR_015G003900v3 16.34 LOC18104599 uncharacterized LOC18104599 18104599 POPTR_013G127900v3 16.32 LOC7454532 uncharacterized LOC7454532 7454532 POPTR_012G094400v3 16.31 LOC18099196 resistance to inhibitors of cholinesterase protein 3 18099196 POPTR_005G114100v3 16.29 LOC112328712 U1 spliceosomal RNA 112328712 16.28 LOC7469668 uncharacterized LOC7469668 7469668 POPTR_009G081900v3 16.26 LOC7483571 17.4 kDa class III heat shock protein 7483571 POPTR_003G071100v3 16.19 LOC18095607 glutelin type-A 3 18095607 POPTR_001G402600v3 16.15 LOC112327842 BURP domain protein RD22-like 112327842 POPTR_006G243700v3 16.12 LOC7470765 uncharacterized LOC7470765 7470765 POPTR_001G289100v3 16.11 LOC18097015 36.4 kDa proline-rich protein 18097015 POPTR_003G111300v3 16.09 LOC18110663 ankyrin repeat-containing protein At5g02620 18110663 POPTR_019G107800v3 16.04 LOC7465228 galactinol synthase 2 7465228 POPTR_013G005900v3 16.00 LOC7480716 protein JASON 7480716 POPTR_002G057000v3 15.96 LOC7463780 uncharacterized LOC7463780 7463780 POPTR_018G046500v3 15.94 LOC7465139 ABC transporter G family member 15 7465139 POPTR_001G255800v3 15.92 LOC18098272 MLO-like protein 4 18098272 POPTR_004G218500v3 15.91 LOC7488722 probably inactive leucine-rich repeat receptor-like protein kinase IMK2 7488722 POPTR_016G126300v3 15.91 LOC7463600 E3 ubiquitin-protein ligase SINAT2 7463600 POPTR_003G215400v3 15.90 LOC7454859 asparagine synthetase [glutamine-hydrolyzing] 1 7454859 POPTR_009G072900v3 15.89 LOC7461177 uncharacterized LOC7461177 7461177 POPTR_004G118700v3 15.87 LOC18097977 18.1 kDa class I heat shock protein 18097977 POPTR_004G187200v3 15.85 LOC7485810 basic leucine zipper 1 7485810 POPTR_010G142900v3 15.85 LOC112325947 uncharacterized LOC112325947 112325947 POPTR_T132100v3 15.82 LOC7460564 uncharacterized LOC7460564 7460564 POPTR_001G059500v3 15.82 LOC7467900 uncharacterized LOC7467900 7467900 POPTR_017G094200v3 15.79 LOC7457873 chlorophyll a-b binding protein 6, chloroplastic 7457873 POPTR_008G041000v3 15.75 LOC7478066 scarecrow-like protein 28 7478066 POPTR_001G109400v3 15.75 LOC7478884 probable xyloglucan endotransglucosylase/hydrolase protein 23 7478884 POPTR_013G005700v3 15.71 LOC7458080 probable pectate lyase 18 7458080 POPTR_012G091500v3 15.69 LOC7496055 ethylene-responsive transcription factor ERF003 7496055 POPTR_001G048200v3 15.68 LOC7474675 36.4 kDa proline-rich protein 7474675 POPTR_006G065500v3 15.67
Lower 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC7467239 homeobox protein knotted-1-like 2 7467239 POPTR_002G113300v3 -65.62 LOC7486809 caffeic acid 3-O-methyltransferase 7486809 POPTR_014G106600v3 -65.07 LOC18098217 hybrid signal transduction histidine kinase M 18098217 POPTR_004G212900v3 -64.57 LOC18104619 uncharacterized LOC18104619 18104619 POPTR_013G129900v3 -64.14 LOC7465518 14 kDa proline-rich protein DC2.15 7465518 POPTR_003G111400v3 -63.90 LOC18108581 desmethylxanthohumol 6'-O-methyltransferase 18108581 POPTR_019G102900v3 -63.17 LOC18104971 cytochrome P450 CYP82D47 18104971 POPTR_014G037900v3 -62.22 LOC7463625 homeobox protein SBH1 7463625 POPTR_004G004700v3 -61.97 LOC18105479 peroxidase 5 18105479 POPTR_015G003600v3 -61.58 LOC7464036 BURP domain-containing protein BNM2A 7464036 POPTR_009G114600v3 -60.93 LOC7459171 probable glutathione S-transferase 7459171 POPTR_001G431400v3 -60.77 LOC18104827 isoflavone 2'-hydroxylase 18104827 POPTR_014G021700v3 -60.70 LOC18099238 peroxidase 72 18099238 POPTR_005G118700v3 -60.48 LOC18098678 respiratory burst oxidase homolog protein B 18098678 POPTR_005G026200v3 -60.06 LOC18109727 basic 7S globulin 18109727 POPTR_013G070300v3 -59.94 LOC7467535 AT-hook motif nuclear-localized protein 20 7467535 POPTR_008G164500v3 -59.86 LOC7482129 subtilisin-like protease SBT1.3 7482129 POPTR_012G131500v3 -59.63 LOC112323828 uncharacterized LOC112323828 112323828 POPTR_013G007900v3 -59.59 LOC112326669 cytochrome P450 83B1-like 112326669 POPTR_002G026500v3 -59.48 LOC18108832 probable glutathione S-transferase 18108832 POPTR_001G436700v3 -59.09 LOC7480952 cytochrome P450 71B36 7480952 POPTR_008G184400v3 -59.08 LOC7490667 cytochrome P450 83B1 7490667 POPTR_002G025800v3 -58.74 LOC18105842 homeobox protein knotted-1-like 6 18105842 POPTR_015G079100v3 -58.57 LOC7458442 aspartyl protease family protein At5g10770 7458442 POPTR_018G014900v3 -58.43 LOC18111166 cytochrome P450 81E8 18111166 POPTR_003G007400v3 -58.32 LOC7494476 uncharacterized acetyltransferase At3g50280 7494476 POPTR_008G065000v3 -58.25 LOC18096896 cationic amino acid transporter 6, chloroplastic 18096896 POPTR_003G083700v3 -58.14 LOC7464039 organ-specific protein S2 7464039 POPTR_009G114700v3 -57.95 LOC7478680 pathogenesis-related protein 1 7478680 POPTR_001G288600v3 -57.85 LOC7462606 subtilisin-like protease SBT1.9 7462606 POPTR_007G045100v3 -57.74 LOC18094338 protein LATERAL ROOT PRIMORDIUM 1 18094338 POPTR_001G027700v3 -57.74 LOC18098801 disease resistance protein RPM1 18098801 POPTR_005G035700v3 -57.50 LOC7465124 osmotin-like protein 7465124 POPTR_001G237600v3 -57.48 LOC112325798 uncharacterized LOC112325798 112325798 -57.03 LOC7458443 aspartyl protease family protein At5g10770 7458443 POPTR_018G014700v3 -56.90 LOC18096306 ent-kaurene oxidase, chloroplastic 18096306 POPTR_002G129700v3 -56.79 LOC18102467 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 18102467 POPTR_010G070700v3 -56.76 LOC7471071 squamosa promoter-binding-like protein 6 7471071 POPTR_008G097900v3 -56.71 LOC18098895 flavonoid 3'-monooxygenase 18098895 POPTR_005G045800v3 -56.63 LOC7475946 G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 7475946 POPTR_010G025800v3 -56.47 LOC112327473 probable glutathione S-transferase 112327473 POPTR_001G431700v3 -56.26 LOC18103792 homeobox protein knotted-1-like 2 18103792 POPTR_012G087100v3 -56.21 LOC7462868 WUSCHEL-related homeobox 4 7462868 POPTR_002G124100v3 -56.18 LOC7487006 protein NRT1/ PTR FAMILY 5.4 7487006 POPTR_001G027100v3 -56.15 LOC7485450 polyphenol oxidase, chloroplastic 7485450 POPTR_011G047300v3 -56.06 LOC18104828 isoflavone 2'-hydroxylase 18104828 POPTR_014G021800v3 -56.04 LOC18107413 uncharacterized LOC18107413 18107413 -56.01 LOC7491376 probable glutathione S-transferase 7491376 POPTR_001G437000v3 -55.96 LOC18100696 uncharacterized LOC18100696 18100696 POPTR_006G258700v3 -55.79 LOC7463390 protein NRT1/ PTR FAMILY 7.2 7463390 POPTR_014G179400v3 -55.76 LOC7485893 uncharacterized LOC7485893 7485893 -55.59 LOC7482608 acid phosphatase 1 7482608 POPTR_016G139700v3 -55.42 LOC18103101 pathogenesis-related genes transcriptional activator PTI5 18103101 POPTR_011G061700v3 -55.25 LOC112324492 transcription factor RAX2 112324492 POPTR_016G099200v3 -55.18 LOC7494372 kunitz trypsin inhibitor 2 7494372 POPTR_004G067900v3 -55.15 LOC7472738 probable membrane-associated kinase regulator 2 7472738 POPTR_001G098000v3 -55.12 LOC7495544 AP2-like ethylene-responsive transcription factor AIL6 7495544 POPTR_007G011600v3 -54.90 LOC7488162 homeobox-leucine zipper protein HOX11 7488162 POPTR_009G023600v3 -54.87 LOC7486687 basic blue protein 7486687 POPTR_001G209300v3 -54.83 LOC7488774 adenine/guanine permease AZG1 7488774 POPTR_016G133800v3 -54.78 LOC7458915 butyrate--CoA ligase AAE11, peroxisomal 7458915 POPTR_016G034800v3 -54.76 LOC7471962 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 7471962 POPTR_002G037500v3 -54.72 LOC112326586 uncharacterized LOC112326586 112326586 -54.68 LOC18102366 zinc finger protein 5 18102366 POPTR_010G036400v3 -54.64 LOC18104942 transcription factor MYB77 18104942 POPTR_014G035100v3 -54.63 LOC18101322 putative glycine-rich cell wall structural protein 1 18101322 POPTR_008G028100v3 -54.48 LOC7491401 benzyl alcohol O-benzoyltransferase 7491401 POPTR_001G448000v3 -54.40 LOC7484341 ethylene-responsive transcription factor ERF113 7484341 POPTR_012G108500v3 -54.40 LOC18107228 F-box/kelch-repeat protein At3g27150 18107228 POPTR_017G069500v3 -54.34 LOC7466875 amino acid permease 4 7466875 POPTR_005G068900v3 -54.22 LOC7480605 allene oxide synthase 3 7480605 POPTR_004G149000v3 -54.20 LOC112327500 homeobox protein knotted-1-like 1 112327500 POPTR_005G014200v3 -54.04 LOC18108209 uncharacterized LOC18108209 18108209 POPTR_019G027100v3 -53.97 LOC18098174 AT-hook motif nuclear-localized protein 25 18098174 POPTR_004G208600v3 -53.86 LOC7497799 protein SPIRAL1-like 5 7497799 POPTR_003G131600v3 -53.85 LOC7480363 probable L-type lectin-domain containing receptor kinase S.5 7480363 POPTR_001G455500v3 -53.80 LOC7482599 cytochrome P450 71A1 7482599 POPTR_016G137600v3 -53.80 LOC7475947 G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 7475947 POPTR_010G025700v3 -53.77 LOC7469036 cytochrome P450 71B36 7469036 POPTR_008G184900v3 -53.75 LOC7457890 protein NRT1/ PTR FAMILY 2.7 7457890 POPTR_008G045100v3 -53.69 LOC18105023 cytochrome P450 734A1 18105023 POPTR_014G043100v3 -53.63 LOC18100930 amino acid permease 4 18100930 POPTR_007G100100v3 -53.58 LOC7463303 alpha carbonic anhydrase 7 7463303 POPTR_009G010200v3 -53.56 LOC7462904 dof zinc finger protein DOF1.6 7462904 POPTR_002G129600v3 -53.55 LOC7488130 uncharacterized LOC7488130 7488130 -53.55 LOC7491637 trihelix transcription factor PTL 7491637 POPTR_010G235000v3 -53.48 LOC18098587 homeobox protein knotted-1-like 1 18098587 POPTR_005G017200v3 -53.44 LOC7455945 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 7455945 POPTR_011G109900v3 -53.41 LOC7483143 dof zinc finger protein DOF3.4 7483143 POPTR_007G036400v3 -53.37 LOC7478899 homeobox protein knotted-1-like 1 7478899 POPTR_013G008600v3 -53.32 LOC112329017 metallothionein-like protein type 2 112329017 POPTR_001G041300v3 -53.31 LOC18096094 cytochrome P450 83B1 18096094 POPTR_002G025300v3 -53.29 LOC7480951 cytochrome P450 71B36 7480951 POPTR_008G184000v3 -53.20 LOC7480409 berberine bridge enzyme-like 15 7480409 POPTR_001G463400v3 -53.18 LOC7461382 peroxidase 15 7461382 POPTR_003G214900v3 -53.14 LOC7470575 CASP-like protein 3A2 7470575 POPTR_001G188000v3 -53.13 LOC18095866 indole-3-acetic acid-amido synthetase GH3.6 18095866 POPTR_001G410400v3 -53.10 LOC7492256 uncharacterized LOC7492256 7492256 POPTR_006G213100v3 -53.09 LOC7455947 epidermis-specific secreted glycoprotein EP1 7455947 POPTR_011G110200v3 -53.01 LOC7464678 probable inactive patatin-like protein 9 7464678 POPTR_005G210100v3 -52.99	Lower 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC18105022 cytochrome P450 734A1 18105022 POPTR_014G043000v3 -59.39 LOC7491394 benzyl alcohol O-benzoyltransferase 7491394 POPTR_001G447500v3 -49.34 LOC7459765 endoglucanase 8 7459765 POPTR_010G109200v3 -46.30 LOC18097400 beta-glucosidase 46 18097400 POPTR_004G019300v3 -45.73 LOC7478050 tubulin beta-1 chain 7478050 POPTR_001G106100v3 -45.32 LOC7495107 auxin transporter-like protein 3 7495107 POPTR_002G087000v3 -43.75 LOC18096496 major latex allergen Hev b 5 18096496 POPTR_002G223100v3 -43.40 LOC7465852 tubulin beta-5 chain 7465852 POPTR_003G125400v3 -43.13 LOC18095988 benzyl alcohol O-benzoyltransferase 18095988 POPTR_001G447400v3 -43.01 LOC7482147 fasciclin-like arabinogalactan protein 12 7482147 POPTR_012G127900v3 -42.85 LOC7496848 glucan endo-1,3-beta-glucosidase 12 7496848 POPTR_002G007300v3 -42.48 LOC7480392 patellin-4 7480392 POPTR_001G461400v3 -42.14 LOC18097241 peroxidase A2 18097241 POPTR_003G214700v3 -42.10 LOC7468527 E3 ubiquitin-protein ligase RNF34 7468527 POPTR_014G158900v3 -42.03 LOC7478636 uncharacterized LOC7478636 7478636 POPTR_009G145700v3 -41.76 LOC7464476 caffeic acid 3-O-methyltransferase 3 7464476 POPTR_015G003100v3 -41.75 LOC7489623 probable RNA-binding protein ARP1 7489623 POPTR_010G216800v3 -40.77 LOC7462495 phosphomethylethanolamine N-methyltransferase 7462495 POPTR_015G039000v3 -40.47 LOC18102014 uncharacterized LOC18102014 18102014 POPTR_009G037500v3 -40.39 LOC7482129 subtilisin-like protease SBT1.3 7482129 POPTR_012G131500v3 -40.08 LOC7479828 trihelix transcription factor PTL 7479828 POPTR_008G025600v3 -39.58 LOC7486746 uncharacterized LOC7486746 7486746 POPTR_012G051500v3 -39.45 LOC18107762 ribulose bisphosphate carboxylase small chain clone 512 18107762 POPTR_018G091400v3 -39.32 LOC7479244 uncharacterized LOC7479244 7479244 POPTR_003G119400v3 -38.99 LOC7495241 probable pectinesterase/pectinesterase inhibitor 7 7495241 POPTR_014G127000v3 -38.97 LOC7469382 probable pectate lyase 8 7469382 POPTR_014G178100v3 -38.61 LOC7484878 serine carboxypeptidase-like 45 7484878 POPTR_012G105500v3 -38.11 LOC7475559 zinc finger CCCH domain-containing protein 15 7475559 POPTR_010G118700v3 -38.08 LOC7453542 cell division cycle 20.2, cofactor of APC complex 7453542 POPTR_019G021800v3 -38.05 LOC18098936 uncharacterized LOC18098936 18098936 POPTR_005G050000v3 -38.03 LOC7492760 uncharacterized LOC7492760 7492760 POPTR_014G095600v3 -37.94 LOC7489643 syntaxin-related protein KNOLLE 7489643 POPTR_013G053200v3 -37.88 LOC7466839 protein ASPARTIC PROTEASE IN GUARD CELL 2 7466839 POPTR_005G063000v3 -37.50 LOC7469857 syntaxin-related protein KNOLLE 7469857 POPTR_019G030800v3 -37.50 LOC7487081 kinesin-like protein KIN-8A 7487081 POPTR_012G058400v3 -37.49 LOC7474219 mavicyanin 7474219 POPTR_010G089900v3 -37.48 LOC7464807 cytochrome b561 domain-containing protein At2g30890 7464807 POPTR_005G204300v3 -37.43 LOC7464614 laccase-12 7464614 POPTR_010G183600v3 -37.22 LOC7495983 ABC transporter B family member 15 7495983 POPTR_017G085000v3 -37.19 LOC7460791 TORTIFOLIA1-like protein 4 7460791 POPTR_010G038900v3 -37.19 LOC18095049 uncharacterized LOC18095049 18095049 POPTR_001G245400v3 -37.05 LOC18101887 protein TOO MANY MOUTHS 18101887 POPTR_008G211800v3 -36.96 LOC7490531 sucrose synthase 7490531 POPTR_018G063500v3 -36.85 LOC112327516 14 kDa proline-rich protein DC2.15-like 112327516 POPTR_001G121900v3 -36.80 LOC7472467 uncharacterized LOC7472467 7472467 POPTR_008G078000v3 -36.58 LOC7467101 high mobility group B protein 13 7467101 POPTR_001G093700v3 -36.55 LOC18106792 reticulon-like protein B17 18106792 POPTR_017G014300v3 -36.55 LOC18101699 uncharacterized LOC18101699 18101699 POPTR_008G192300v3 -36.54 LOC7483997 receptor protein kinase-like protein ZAR1 7483997 POPTR_016G050800v3 -36.54 LOC18104536 trans-resveratrol di-O-methyltransferase 18104536 POPTR_013G120800v3 -36.53 LOC7488337 aspartyl protease family protein 2 7488337 POPTR_008G115900v3 -36.43 LOC7485867 uncharacterized LOC7485867 7485867 POPTR_010G152900v3 -36.42 LOC7491631 serine/threonine-protein kinase D6PKL1 7491631 POPTR_010G236200v3 -36.18 LOC7484755 LRR receptor-like serine/threonine-protein kinase FEI 2 7484755 POPTR_012G071100v3 -36.17 LOC7465494 PLAT domain-containing protein 3 7465494 POPTR_003G107100v3 -36.10 LOC7469655 uncharacterized LOC7469655 7469655 POPTR_009G084400v3 -35.99 LOC7463603 peroxidase A2 7463603 POPTR_003G214800v3 -35.93 LOC18093972 14 kDa proline-rich protein DC2.15 18093972 POPTR_T145400v3 -35.92 LOC18097015 36.4 kDa proline-rich protein 18097015 POPTR_003G111300v3 -35.88 LOC7486757 kinesin-like protein NACK1 7486757 POPTR_012G054400v3 -35.85 LOC7467689 protein WVD2-like 7 7467689 POPTR_001G336300v3 -35.79 LOC7470690 protein IQ-DOMAIN 1 7470690 POPTR_006G226600v3 -35.71 LOC7498063 leucine-rich repeat extensin-like protein 6 7498063 POPTR_010G083000v3 -35.67 LOC7479690 indole-3-acetic acid-induced protein ARG7 7479690 POPTR_002G024500v3 -35.55 LOC7471686 uncharacterized LOC7471686 7471686 POPTR_001G465400v3 -35.45 LOC7455400 probable xyloglucan endotransglucosylase/hydrolase protein 33 7455400 POPTR_014G115000v3 -35.39 LOC7453885 kinesin-like protein NACK1 7453885 POPTR_015G044600v3 -35.38 LOC18099196 resistance to inhibitors of cholinesterase protein 3 18099196 POPTR_005G114100v3 -35.26 LOC18104599 uncharacterized LOC18104599 18104599 POPTR_013G127900v3 -35.20 LOC7471525 protein UPSTREAM OF FLC 7471525 POPTR_005G078300v3 -35.17 LOC7474391 uncharacterized LOC7474391 7474391 POPTR_010G179300v3 -35.13 LOC7478725 uncharacterized LOC7478725 7478725 POPTR_009G090900v3 -35.12 LOC7479749 uncharacterized LOC7479749 7479749 POPTR_002G038200v3 -35.06 LOC7494682 nitrate regulatory gene2 protein 7494682 POPTR_005G249400v3 -35.06 LOC18098786 probable microtubule-binding protein TANGLED 18098786 POPTR_005G033200v3 -35.05 LOC7462100 laccase-12 7462100 POPTR_008G073700v3 -35.01 LOC7481802 patatin-like protein 7 7481802 POPTR_015G122700v3 -34.98 LOC7480040 probable inactive patatin-like protein 9 7480040 POPTR_002G052600v3 -34.97 LOC7479527 uncharacterized LOC7479527 7479527 POPTR_006G192500v3 -34.96 LOC7491637 trihelix transcription factor PTL 7491637 POPTR_010G235000v3 -34.96 LOC7490520 protein BIG GRAIN 1-like A 7490520 POPTR_018G065000v3 -34.66 LOC18108496 probable O-methyltransferase 3 18108496 POPTR_019G093000v3 -34.49 LOC7471566 pleiotropic drug resistance protein 1 7471566 POPTR_006G248500v3 -34.42 LOC7461370 phytoene synthase 2, chloroplastic 7461370 POPTR_003G218000v3 -34.41 LOC7476412 cytochrome P450 81E8 7476412 POPTR_005G143800v3 -34.40 LOC7476311 carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 7476311 POPTR_004G062900v3 -34.37 LOC7467900 uncharacterized LOC7467900 7467900 POPTR_017G094200v3 -34.37 LOC7459514 uncharacterized LOC7459514 7459514 POPTR_002G250100v3 -34.35 LOC7463670 rho GDP-dissociation inhibitor 1 7463670 POPTR_006G010500v3 -34.30 LOC18104821 putative cyclin-A3-1 18104821 POPTR_014G021100v3 -34.09 LOC7492083 probable metal-nicotianamine transporter YSL7 7492083 POPTR_005G093800v3 -34.06 LOC7482180 probable leucine-rich repeat receptor-like protein kinase At5g63930 7482180 POPTR_012G128700v3 -34.01 LOC7492253 uncharacterized protein At3g28850 7492253 POPTR_006G212700v3 -34.00 LOC7466834 UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 7466834 POPTR_005G061600v3 -33.92 LOC7497799 protein SPIRAL1-like 5 7497799 POPTR_003G131600v3 -33.86 LOC7458288 glucan endo-1,3-beta-glucosidase 12 7458288 POPTR_002G224600v3 -33.82 LOC7485070 alcohol dehydrogenase 7485070 POPTR_007G108400v3 -33.79 LOC18101082 uncharacterized LOC18101082 18101082 POPTR_007G057800v3 -33.72 LOC112328254 alcohol dehydrogenase-like 112328254 POPTR_007G108500v3 -33.55 LOC7478856 cellulose synthase-like protein D5 7478856 POPTR_002G200300v3 -33.47	Lower 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC7489432 GDSL esterase/lipase At1g29670 7489432 POPTR_018G089400v3 -69.82 LOC18110359 GDSL esterase/lipase At1g29670 18110359 POPTR_018G089200v3 -63.62 LOC7478081 protein HOTHEAD 7478081 POPTR_001G111500v3 -60.86 LOC7461571 GDSL esterase/lipase At1g29660 7461571 POPTR_018G088600v3 -60.79 LOC7479083 thiamine thiazole synthase 2, chloroplastic 7479083 POPTR_004G020500v3 -59.82 LOC7457873 chlorophyll a-b binding protein 6, chloroplastic 7457873 POPTR_008G041000v3 -59.42 LOC18100640 LRR receptor-like serine/threonine-protein kinase ERECTA 18100640 POPTR_006G220100v3 -59.19 LOC7494899 cytochrome P450 77A3 7494899 POPTR_008G025500v3 -57.90 LOC18107755 GDSL esterase/lipase At1g29660 18107755 POPTR_018G089500v3 -57.77 LOC18097807 probable carboxylesterase 1 18097807 POPTR_004G142900v3 -56.22 LOC7471197 GDSL esterase/lipase At4g28780 7471197 POPTR_002G253400v3 -55.69 LOC7496048 linoleate 13S-lipoxygenase 2-1, chloroplastic 7496048 POPTR_001G015400v3 -55.68 LOC7471832 chlorophyll a-b binding protein of LHCII type 1 7471832 POPTR_011G079500v3 -55.67 LOC7461618 protein ECERIFERUM 3 7461618 POPTR_018G099400v3 -54.55 LOC18106708 ABC transporter G family member 11 18106708 POPTR_017G155300v3 -54.34 LOC7463044 expansin-A10 7463044 POPTR_004G123200v3 -54.00 LOC18100345 auxin-binding protein ABP19a 18100345 POPTR_006G142600v3 -53.91 LOC7469999 aureusidin synthase 7469999 POPTR_004G156500v3 -53.84 LOC7461568 GDSL esterase/lipase At1g29670 7461568 POPTR_018G088500v3 -53.42 LOC7484752 uncharacterized LOC7484752 7484752 POPTR_012G070600v3 -52.63 LOC18105987 probable galactinol--sucrose galactosyltransferase 2 18105987 POPTR_016G002300v3 -52.47 LOC7455630 zinc finger protein 8 7455630 POPTR_006G195100v3 -52.22 LOC7482588 non-specific lipid-transfer protein 1 7482588 POPTR_016G135800v3 -51.55 LOC7463666 anthocyanidin 3-O-glucosyltransferase 2 7463666 POPTR_006G010000v3 -51.13 LOC7474394 fatty alcohol:caffeoyl-CoA acyltransferase 7474394 POPTR_010G180000v3 -50.55 LOC7461193 protein TIC 62, chloroplastic 7461193 POPTR_004G150300v3 -50.44 LOC7485534 thiamine thiazole synthase 2, chloroplastic 7485534 POPTR_011G025200v3 -50.43 LOC7485729 3-ketoacyl-CoA synthase 12 7485729 POPTR_001G234500v3 -50.42 LOC7493257 DNA damage-repair/toleration protein DRT100 7493257 POPTR_003G207000v3 -50.26 LOC7470700 GATA transcription factor 21 7470700 POPTR_006G229200v3 -50.03 LOC18109826 linoleate 13S-lipoxygenase 2-1, chloroplastic 18109826 POPTR_001G015600v3 -49.76 LOC7463588 protein YLS3 7463588 POPTR_003G217000v3 -49.74 LOC7463155 photosystem II 22 kDa protein, chloroplastic 7463155 POPTR_002G083500v3 -49.72 LOC18095620 beta-glucosidase 18 18095620 POPTR_001G403900v3 -49.44 LOC7493970 chlorophyll a-b binding protein of LHCII type 1 7493970 POPTR_005G239200v3 -49.24 LOC18104896 photosystem I chlorophyll a/b-binding protein 5, chloroplastic 18104896 POPTR_014G029700v3 -49.21 LOC7493971 chlorophyll a-b binding protein of LHCII type 1 7493971 POPTR_005G239300v3 -49.03 LOC7455614 probable mannitol dehydrogenase 7455614 POPTR_006G199100v3 -48.95 LOC7469083 glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic/amyloplastic 7469083 POPTR_008G195100v3 -48.78 LOC18095653 chlorophyll a-b binding protein 13, chloroplastic 18095653 POPTR_001G407100v3 -48.47 LOC18105327 protein ECERIFERUM 1 18105327 POPTR_014G152300v3 -48.07 LOC18105329 protein ECERIFERUM 1 18105329 POPTR_014G152600v3 -47.95 LOC7458376 14 kDa proline-rich protein DC2.15 7458376 POPTR_018G025900v3 -47.95 LOC7459521 glycine-rich protein 5 7459521 POPTR_002G252400v3 -47.94 LOC18110360 GDSL esterase/lipase At5g45670 18110360 POPTR_018G089300v3 -47.88 LOC7459011 uncharacterized LOC7459011 7459011 POPTR_018G031100v3 -47.84 LOC18099145 probable aquaporin PIP2-8 18099145 POPTR_005G109300v3 -47.69 LOC7488885 axial regulator YABBY 1 7488885 POPTR_014G066700v3 -47.56 LOC7493413 putative cysteine-rich receptor-like protein kinase 20 7493413 POPTR_018G111600v3 -47.47 LOC7469930 putative axial regulator YABBY 2 7469930 POPTR_016G067300v3 -47.41 LOC18094302 linoleate 13S-lipoxygenase 2-1, chloroplastic 18094302 POPTR_001G015500v3 -47.27 LOC7478338 putative UPF0481 protein At3g02645 7478338 POPTR_003G205900v3 -47.19 LOC7476660 pectinesterase 7476660 POPTR_018G051400v3 -47.06 LOC112326879 auxin-binding protein ABP19a-like 112326879 POPTR_003G065300v3 -47.00 LOC7459061 MLP-like protein 423 7459061 POPTR_010G096000v3 -46.97 LOC7495733 leucine-rich repeat extensin-like protein 3 7495733 POPTR_006G245600v3 -46.87 LOC18097853 uncharacterized LOC18097853 18097853 POPTR_004G147300v3 -46.77 LOC7495323 uncharacterized protein ycf23 7495323 POPTR_011G080900v3 -46.70 LOC18097900 proline-rich protein 4 18097900 POPTR_004G168600v3 -46.66 LOC7491995 NAD(P)H-quinone oxidoreductase subunit U, chloroplastic 7491995 POPTR_006G221900v3 -46.65 LOC7454978 photosystem II 10 kDa polypeptide, chloroplastic 7454978 POPTR_011G142200v3 -46.35 LOC18095515 vicilin-like seed storage protein At2g18540 18095515 POPTR_001G393700v3 -46.34 LOC18103531 fructose-bisphosphate aldolase 5, cytosolic 18103531 POPTR_011G165000v3 -46.27 LOC18110979 rubredoxin 18110979 POPTR_013G035700v3 -46.18 LOC7462884 abscisic acid 8'-hydroxylase 4 7462884 POPTR_002G126100v3 -46.05 LOC7475695 auxin-binding protein ABP19a 7475695 POPTR_013G141900v3 -46.02 LOC18094192 glycine cleavage system H protein, mitochondrial 18094192 POPTR_001G144800v3 -45.70 LOC112326027 uncharacterized LOC112326027 112326027 POPTR_T145800v3 -45.68 LOC18103943 silicon efflux transporter LSI2 18103943 POPTR_012G144000v3 -45.56 LOC7454678 zinc finger protein 8 7454678 POPTR_016G060600v3 -45.45 LOC7471126 photosystem I reaction center subunit XI, chloroplastic 7471126 POPTR_002G239700v3 -45.40 LOC7456308 chaperone protein dnaJ C76, chloroplastic 7456308 POPTR_007G072600v3 -45.39 LOC7468515 fatty acid hydroperoxide lyase, chloroplastic 7468515 POPTR_014G155800v3 -45.30 LOC7485185 zinc-finger homeodomain protein 9 7485185 POPTR_012G040900v3 -45.21 LOC7495294 alpha-farnesene synthase 7495294 POPTR_011G031800v3 -45.18 LOC18098559 psbP domain-containing protein 1, chloroplastic 18098559 POPTR_005G010700v3 -45.14 LOC18098679 formin-like protein 11 18098679 POPTR_005G026300v3 -44.89 LOC7467036 beta-carotene isomerase D27, chloroplastic 7467036 POPTR_001G083300v3 -44.84 LOC18105332 protein ECERIFERUM 1 18105332 POPTR_014G152900v3 -44.79 LOC7472460 GDSL esterase/lipase At1g06990 7472460 POPTR_008G076600v3 -44.76 LOC7489712 myb-related protein 306 7489712 POPTR_013G067500v3 -44.58 LOC7461508 putative S-adenosyl-L-methionine-dependent methyltransferase Mvan_0910 7461508 POPTR_002G260300v3 -44.36 LOC7463840 haloalkane dehalogenase 7463840 POPTR_001G201500v3 -44.20 LOC7464751 NAD(P)H-quinone oxidoreductase subunit N, chloroplastic 7464751 POPTR_013G160600v3 -44.11 LOC7497862 cellulose synthase-like protein G3 7497862 POPTR_003G142300v3 -44.04 LOC18109217 G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 18109217 POPTR_004G028700v3 -44.03 LOC7460107 uncharacterized LOC7460107 7460107 POPTR_009G155300v3 -43.82 LOC7477424 ribulose bisphosphate carboxylase small chain, chloroplastic 7477424 POPTR_004G100000v3 -43.71 LOC18106819 peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic 18106819 POPTR_017G017500v3 -43.64 LOC7482994 UDP-glycosyltransferase 88B1 7482994 POPTR_012G036000v3 -43.63 LOC7467372 photosystem II 5 kDa protein, chloroplastic 7467372 POPTR_009G052500v3 -43.43 LOC7463976 aquaporin AQPAn.G 7463976 POPTR_009G128500v3 -43.09 LOC7455648 peroxiredoxin Q, chloroplastic 7455648 POPTR_006G137500v3 -43.09 LOC7482788 chlorophyll a-b binding protein 7, chloroplastic 7482788 POPTR_001G056700v3 -43.08 LOC18094096 phosphoribulokinase, chloroplastic 18094096 POPTR_001G134000v3 -43.01 LOC7482333 ABC transporter G family member 15 7482333 POPTR_009G051200v3 -43.00 LOC18096300 subtilisin-like protease SBT1.9 18096300 POPTR_002G124500v3 -42.97 LOC7497385 anthocyanidin 3-O-glucosyltransferase 7 7497385 POPTR_013G143900v3 -42.96 LOC18109836 UDP-glycosyltransferase 74E2 18109836 POPTR_017G032700v3 -42.92 LOC7489907 homeobox-leucine zipper protein HDG2 7489907 POPTR_002G230200v3 -42.90	Lower 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC7497095 endochitinase PR4 7497095 POPTR_019G094000v3 -61.43 LOC18108499 endochitinase EP3 18108499 POPTR_019G093900v3 -59.07 LOC7474214 primary amine oxidase 7474214 POPTR_010G089000v3 -58.49 LOC7493197 chalcone synthase 1 7493197 POPTR_003G176700v3 -57.59 LOC7498090 basic endochitinase CHB4 7498090 POPTR_019G094100v3 -55.38 LOC18101160 probable indole-3-acetic acid-amido synthetase GH3.1 18101160 POPTR_007G050300v3 -54.35 LOC7469845 bark storage protein A 7469845 POPTR_019G050200v3 -53.75 LOC18095154 pathogenesis-related protein 1 18095154 POPTR_T131500v3 -53.68 LOC7465124 osmotin-like protein 7465124 POPTR_001G237600v3 -52.86 LOC7480368 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 7480368 POPTR_001G457000v3 -51.47 LOC7486336 cytochrome P450 78A7 7486336 POPTR_005G084500v3 -50.21 LOC7493352 EG45-like domain containing protein 7493352 POPTR_018G098200v3 -49.13 LOC18100487 GDSL esterase/lipase At5g45670 18100487 POPTR_006G166800v3 -48.75 LOC18095305 gibberellin-regulated protein 14 18095305 POPTR_001G350600v3 -48.29 LOC7480140 salicylate carboxymethyltransferase 7480140 POPTR_007G021300v3 -47.86 LOC112324307 acidic endochitinase SE2-like 112324307 POPTR_015G023900v3 -47.65 LOC7485450 polyphenol oxidase, chloroplastic 7485450 POPTR_011G047300v3 -47.31 LOC7489106 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 7489106 POPTR_011G156600v3 -46.58 LOC18100486 GDSL esterase/lipase At5g45670 18100486 POPTR_006G166700v3 -46.43 LOC18094781 uncharacterized LOC18094781 18094781 POPTR_001G188900v3 -46.39 LOC7464794 protodermal factor 1 7464794 POPTR_005G200900v3 -46.14 LOC18103438 probable glutathione S-transferase parC 18103438 POPTR_011G140600v3 -45.81 LOC7493198 chalcone synthase 1 7493198 POPTR_003G176800v3 -45.59 LOC7465052 probable indole-3-acetic acid-amido synthetase GH3.1 7465052 POPTR_001G298300v3 -44.98 LOC112325615 uncharacterized LOC112325615 112325615 -44.92 LOC7479547 class V chitinase 7479547 POPTR_006G188300v3 -44.87 LOC18097932 uncharacterized LOC18097932 18097932 POPTR_T020000v3 -44.35 LOC18105663 acidic endochitinase 18105663 POPTR_015G024100v3 -44.32 LOC7465826 leucoanthocyanidin dioxygenase 7465826 POPTR_003G119100v3 -43.97 LOC18108208 uncharacterized LOC18108208 18108208 POPTR_019G027000v3 -43.74 LOC18108209 uncharacterized LOC18108209 18108209 POPTR_019G027100v3 -43.51 LOC18108207 uncharacterized LOC18108207 18108207 POPTR_019G026900v3 -43.36 LOC18107416 cinnamoyl-CoA reductase-like SNL6 18107416 POPTR_017G110500v3 -42.18 LOC7490928 leucoanthocyanidin dioxygenase 7490928 POPTR_001G113100v3 -42.17 LOC18101882 major allergen Pru ar 1 18101882 POPTR_008G212300v3 -42.12 LOC7478511 glucan endo-1,3-beta-glucosidase 7478511 POPTR_001G255100v3 -41.90 LOC112324670 butyrate--CoA ligase AAE11, peroxisomal-like 112324670 POPTR_017G138400v3 -41.70 LOC18109964 uncharacterized LOC18109964 18109964 POPTR_T055700v3 -41.56 LOC18106561 butyrate--CoA ligase AAE11, peroxisomal 18106561 POPTR_T116500v3 -41.41 LOC7453765 carbonic anhydrase 2 7453765 POPTR_015G076000v3 -41.35 LOC7472993 dirigent protein 23 7472993 POPTR_001G214600v3 -41.15 LOC7468057 probable 2-oxoglutarate-dependent dioxygenase At5g05600 7468057 POPTR_006G101100v3 -41.04 LOC18106059 anthocyanidin 3-O-glucosyltransferase 2 18106059 POPTR_016G017100v3 -41.01 LOC7484626 non-specific lipid-transfer protein 1 7484626 POPTR_006G108100v3 -40.92 LOC7467474 endochitinase PR4 7467474 POPTR_019G093800v3 -40.86 LOC7479071 cytochrome P450 77A1 7479071 POPTR_004G018800v3 -40.83 LOC7467574 uncharacterized LOC7467574 7467574 POPTR_016G078000v3 -40.64 LOC7478680 pathogenesis-related protein 1 7478680 POPTR_001G288600v3 -40.50 LOC18105664 acidic endochitinase 18105664 POPTR_015G024000v3 -40.49 LOC18100730 UDP-glycosyltransferase 73B4 18100730 POPTR_006G272600v3 -40.22 LOC7493199 chalcone synthase 1 7493199 POPTR_003G176900v3 -39.93 LOC7465055 uncharacterized LOC7465055 7465055 -39.77 LOC7491292 uncharacterized protein At5g01610 7491292 POPTR_014G127500v3 -39.74 LOC18109366 uncharacterized LOC18109366 18109366 POPTR_015G070700v3 -39.68 LOC18109505 uncharacterized LOC18109505 18109505 -39.67 LOC18109264 probable glutathione S-transferase 18109264 POPTR_011G140400v3 -39.63 LOC7469860 apyrase 2 7469860 POPTR_019G031200v3 -39.57 LOC7495526 probable pectinesterase 53 7495526 POPTR_007G015700v3 -39.08 LOC18102535 putative Myb family transcription factor At1g14600 18102535 POPTR_010G099600v3 -38.89 LOC18096340 cucumber peeling cupredoxin 18096340 POPTR_002G150600v3 -38.86 LOC7496976 cytochrome P450 86A8 7496976 POPTR_014G085800v3 -38.67 LOC7475620 leucoanthocyanidin reductase 7475620 POPTR_015G050200v3 -38.46 LOC7458180 cytochrome P450 86A7 7458180 POPTR_003G129100v3 -38.36 LOC7469036 cytochrome P450 71B36 7469036 POPTR_008G184900v3 -38.30 LOC7476433 uncharacterized LOC7476433 7476433 POPTR_005G148400v3 -38.24 LOC7497312 growth-regulating factor 1 7497312 POPTR_014G012800v3 -38.21 LOC18110625 uncharacterized LOC18110625 18110625 POPTR_019G028800v3 -38.17 LOC7487723 GDSL esterase/lipase At5g33370 7487723 POPTR_013G051100v3 -38.16 LOC18106165 glucan endo-1,3-beta-glucosidase, basic isoform 18106165 POPTR_016G057400v3 -38.10 LOC18096165 protodermal factor 1 18096165 POPTR_002G060800v3 -37.96 LOC18094858 protein HOTHEAD 18094858 POPTR_001G200800v3 -37.95 LOC7477191 major allergen Pru ar 1 7477191 POPTR_010G000600v3 -37.82 LOC7470074 36.4 kDa proline-rich protein 7470074 POPTR_018G126000v3 -37.59 LOC18100766 transcription factor WER 18100766 POPTR_006G275900v3 -37.43 LOC7471942 dihydroflavonol 4-reductase 7471942 POPTR_002G033600v3 -37.34 LOC18106559 butyrate--CoA ligase AAE11, peroxisomal 18106559 -37.31 LOC18096598 pectinesterase 18096598 POPTR_003G001900v3 -37.24 LOC18104805 cytochrome b5 18104805 POPTR_014G019200v3 -37.05 LOC7460519 chalcone synthase 1 7460519 POPTR_001G051500v3 -37.04 LOC7497264 myb-related protein 308 7497264 POPTR_002G173900v3 -37.03 LOC18098314 protein DMP3 18098314 POPTR_004G223500v3 -36.93 LOC18111197 pectinesterase 18111197 POPTR_T151500v3 -36.84 LOC7478165 dynamin-related protein 4C 7478165 POPTR_003G024800v3 -36.80 LOC18104574 cytochrome P450 82G1 18104574 POPTR_013G125300v3 -36.76 LOC7466021 WD repeat-containing protein LWD1 7466021 POPTR_006G209000v3 -36.75 LOC7466071 GDSL esterase/lipase CPRD49 7466071 POPTR_016G115800v3 -36.68 LOC18096599 pectinesterase 18096599 POPTR_003G002100v3 -36.56 LOC7477833 transcription factor MYB13 7477833 POPTR_001G086700v3 -36.43 LOC18107881 beta-amyrin 28-oxidase 18107881 POPTR_018G149300v3 -36.40 LOC18102943 (3S,6E)-nerolidol synthase 1 18102943 POPTR_011G032300v3 -36.12 LOC7468120 transcription factor MYB108 7468120 POPTR_010G149900v3 -36.12 LOC7475657 heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic 7475657 POPTR_015G043400v3 -36.10 LOC18098695 shikimate O-hydroxycinnamoyltransferase 18098695 POPTR_005G028000v3 -36.09 LOC7456109 uncharacterized LOC7456109 7456109 -36.07 LOC7475030 flavonoid 3',5'-hydroxylase 1 7475030 POPTR_009G069100v3 -36.07 LOC7491288 endoglucanase 17 7491288 POPTR_014G126900v3 -36.06 LOC7463139 probable WRKY transcription factor 43 7463139 POPTR_015G099200v3 -35.96 LOC7478149 dynamin-related protein 4C 7478149 POPTR_003G024600v3 -35.95 LOC7461977 probable pectinesterase 68 7461977 POPTR_003G076900v3 -35.94 LOC7484857 uncharacterized LOC7484857 7484857 POPTR_012G101800v3 -35.82	Lower 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC7468487 probable pectinesterase/pectinesterase inhibitor 35 7468487 POPTR_014G149700v3 -48.15 LOC7473251 thioredoxin H-type 2 7473251 POPTR_008G194100v3 -44.43 LOC7466811 endochitinase WIN8 7466811 POPTR_004G182100v3 -44.27 LOC7470402 ubiquitin-conjugating enzyme E2 10 7470402 POPTR_004G175000v3 -43.21 LOC18102584 uncharacterized LOC18102584 18102584 -42.69 LOC7492393 galactinol synthase 1 7492393 POPTR_010G042000v3 -41.62 LOC7456784 squamosa promoter-binding-like protein 3 7456784 POPTR_004G046700v3 -41.31 LOC7470239 uncharacterized LOC7470239 7470239 POPTR_004G051500v3 -40.82 LOC18104534 fasciclin-like arabinogalactan protein 13 18104534 POPTR_013G120600v3 -40.66 LOC7483121 calmodulin-like protein 1 7483121 POPTR_007G042900v3 -37.42 LOC18104906 uncharacterized LOC18104906 18104906 POPTR_014G030700v3 -37.28 LOC7462890 phosphatidylserine decarboxylase proenzyme 3 7462890 POPTR_002G127000v3 -37.11 LOC7458209 aluminum-activated malate transporter 9 7458209 POPTR_003G134100v3 -36.08 LOC112324129 extensin-2-like 112324129 -35.92 LOC7461263 MLP-like protein 28 7461263 POPTR_017G051100v3 -35.39 LOC18097045 homeobox protein BEL1 homolog 18097045 POPTR_003G131300v3 -35.01 LOC7476706 uncharacterized LOC7476706 7476706 POPTR_003G138700v3 -34.89 LOC18106407 mannose/glucose-specific lectin 18106407 POPTR_017G011900v3 -34.75 LOC7469331 fasciclin-like arabinogalactan protein 2 7469331 POPTR_014G168100v3 -34.68 LOC7491320 monothiol glutaredoxin-S9 7491320 POPTR_014G134300v3 -34.59 LOC7462325 early nodulin-like protein 1 7462325 POPTR_011G117800v3 -34.41 LOC7473446 auxin-responsive protein IAA14 7473446 POPTR_008G161200v3 -34.28 LOC112324764 uncharacterized LOC112324764 112324764 -34.26 LOC18109646 pathogenesis-related protein 1 18109646 POPTR_009G083100v3 -34.22 LOC7457994 E3 ubiquitin-protein ligase RNF165 7457994 POPTR_014G139400v3 -34.18 LOC18102077 pathogenesis-related protein 1 18102077 POPTR_009G083300v3 -34.16 LOC7488718 abscisic acid receptor PYL4 7488718 POPTR_016G125400v3 -33.90 LOC7479080 kirola 7479080 POPTR_004G020100v3 -33.80 LOC7474736 oxysterol-binding protein-related protein 4C 7474736 POPTR_006G076400v3 -33.60 LOC112327994 probable pectate lyase 18 112327994 POPTR_006G196400v3 -33.45 LOC7487337 abscisic acid receptor PYL4 7487337 POPTR_006G104100v3 -33.36 LOC7480132 protein RADIALIS-like 3 7480132 POPTR_007G023800v3 -33.24 LOC18100732 probable sarcosine oxidase 18100732 POPTR_006G272800v3 -33.07 LOC18111301 monothiol glutaredoxin-S9 18111301 POPTR_002G208400v3 -32.99 LOC7482358 myb-related protein 2 7482358 POPTR_013G060200v3 -32.97 LOC18102024 heavy metal-associated isoprenylated plant protein 16 18102024 POPTR_009G048300v3 -32.87 LOC7486494 probable LRR receptor-like serine/threonine-protein kinase At1g53440 7486494 POPTR_016G092700v3 -32.77 LOC112326113 36.4 kDa proline-rich protein-like 112326113 POPTR_T162900v3 -32.68 LOC7469660 pathogenesis-related protein 1B 7469660 POPTR_009G083000v3 -32.55 LOC18099742 36.4 kDa proline-rich protein 18099742 POPTR_006G008500v3 -32.40 LOC18105965 uncharacterized LOC18105965 18105965 POPTR_015G119800v3 -32.36 LOC18101489 uncharacterized LOC18101489 18101489 -32.31 LOC7465161 expansin-A8 7465161 POPTR_013G154700v3 -32.30 LOC7460537 cytochrome P450 78A5 7460537 POPTR_001G054800v3 -32.25 LOC18104342 metalloendoproteinase 1 18104342 POPTR_013G100400v3 -32.03 LOC7473221 galactinol synthase 1 7473221 POPTR_008G189400v3 -32.01 LOC7469203 pathogen-related protein 7469203 POPTR_005G188300v3 -31.91 LOC112325907 protein JINGUBANG-like 112325907 POPTR_T124000v3 -31.84 LOC7453712 36.4 kDa proline-rich protein 7453712 POPTR_016G015500v3 -31.79 LOC7459236 expansin-A8 7459236 POPTR_019G057500v3 -31.74 LOC112326567 extensin-2 112326567 -31.73 LOC7472750 homeobox protein BEL1 homolog 7472750 POPTR_001G100800v3 -31.70 LOC7469204 pathogen-related protein 7469204 POPTR_005G188400v3 -31.70 LOC7456620 omega-hydroxypalmitate O-feruloyl transferase 7456620 POPTR_015G100800v3 -31.51 LOC18094599 ethylene-responsive transcription factor ERF039 18094599 POPTR_001G155700v3 -31.44 LOC7492797 uncharacterized LOC7492797 7492797 POPTR_014G102500v3 -31.20 LOC7493563 cysteine-rich repeat secretory protein 60 7493563 POPTR_004G086000v3 -31.12 LOC7479183 ABC transporter G family member 11 7479183 POPTR_005G073100v3 -31.10 LOC7489433 uncharacterized LOC7489433 7489433 POPTR_018G104500v3 -31.03 LOC18101639 protein SIEVE ELEMENT OCCLUSION B 18101639 POPTR_008G183200v3 -31.00 LOC7484402 probable (S)-N-methylcoclaurine 3'-hydroxylase isozyme 2 7484402 POPTR_012G136600v3 -30.97 LOC7453588 myb-related protein 2 7453588 POPTR_019G032700v3 -30.89 LOC7460667 myb family transcription factor APL 7460667 POPTR_008G081800v3 -30.82 LOC7496463 uncharacterized protein At1g08160 7496463 POPTR_009G003800v3 -30.40 LOC7481790 protein PHLOEM PROTEIN 2-LIKE A9 7481790 POPTR_015G120200v3 -30.40 LOC7468488 transcription factor IBH1 7468488 POPTR_014G149800v3 -30.39 LOC7462444 crocetin glucosyltransferase, chloroplastic 7462444 POPTR_002G236400v3 -30.37 LOC7464039 organ-specific protein S2 7464039 POPTR_009G114700v3 -30.31 LOC7471699 heavy metal-associated isoprenylated plant protein 47 7471699 POPTR_001G468500v3 -30.29 LOC7475804 gibberellin-regulated protein 9 7475804 POPTR_019G083900v3 -30.14 LOC7479851 probable pectate lyase 13 7479851 POPTR_008G032700v3 -30.13 LOC112324789 berberine bridge enzyme-like 8 112324789 POPTR_001G462400v3 -30.10 LOC7460733 protein JINGUBANG 7460733 POPTR_010G050900v3 -30.09 LOC18099182 thaumatin-like protein 1 18099182 POPTR_005G112700v3 -30.08 LOC7484414 uncharacterized LOC7484414 7484414 POPTR_012G085800v3 -29.96 LOC7492280 ethylene-responsive transcription factor ERF017 7492280 POPTR_006G218200v3 -29.91 LOC112326657 glycine-rich cell wall structural protein 1.8-like 112326657 POPTR_001G141800v3 -29.85 LOC18107565 uncharacterized LOC18107565 18107565 POPTR_018G002700v3 -29.77 LOC7488717 mitoferrin 7488717 POPTR_016G125200v3 -29.68 LOC7488343 lysine histidine transporter-like 6 7488343 POPTR_008G118000v3 -29.63 LOC7456777 uncharacterized LOC7456777 7456777 POPTR_004G048000v3 -29.43 LOC18109666 cytochrome P450 81D11 18109666 POPTR_014G020600v3 -29.42 LOC7482091 jacalin-related lectin 19 7482091 POPTR_012G140000v3 -29.23 LOC7479079 kirola 7479079 POPTR_004G020000v3 -29.13 LOC7473898 cationic amino acid transporter 1 7473898 POPTR_013G030900v3 -29.06 LOC7459548 acid phosphatase 1 7459548 POPTR_002G257700v3 -28.89 LOC112325189 metallothionein-like protein type 3 112325189 POPTR_001G400100v3 -28.88 LOC18107140 NAC domain-containing protein 83 18107140 POPTR_017G063300v3 -28.78 LOC7491921 probable serine/threonine-protein kinase PBL15 7491921 POPTR_003G105400v3 -28.71 LOC7473193 transcription factor HBI1 7473193 POPTR_007G023600v3 -28.67 LOC7463179 probable calcium-binding protein CML29 7463179 POPTR_002G088500v3 -28.60 LOC112326660 glycine-rich cell wall structural protein 1.8-like 112326660 POPTR_001G141700v3 -28.46 LOC7463021 protein trichome birefringence-like 43 7463021 POPTR_004G135600v3 -28.45 LOC7461315 protein SIEVE ELEMENT OCCLUSION B 7461315 POPTR_017G071000v3 -28.30 LOC18101860 monothiol glutaredoxin-S2 18101860 POPTR_008G214600v3 -28.21 LOC7496955 O-glucosyltransferase rumi homolog 7496955 POPTR_014G081600v3 -28.18 LOC7460357 probable 2-oxoglutarate-dependent dioxygenase At5g05600 7460357 POPTR_016G117100v3 -28.10 LOC18105712 zinc finger protein CONSTANS-LIKE 6 18105712 POPTR_015G054600v3 -28.10 LOC7461652 probable sucrose-phosphate synthase 3 7461652 POPTR_001G317600v3 -28.09 LOC18099678 jacalin-related lectin 3 18099678 POPTR_005G232400v3 -28.02	Lower 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC7459521 glycine-rich protein 5 7459521 POPTR_002G252400v3 -35.41 LOC18104130 glycine-rich protein DOT1 18104130 POPTR_013G062100v3 -31.83 LOC18104132 cold-shock protein CS120 18104132 POPTR_013G062300v3 -29.98 LOC7485828 glycine-rich cell wall structural protein 7485828 POPTR_010G146200v3 -27.24 LOC7458168 acid beta-fructofuranosidase 2, vacuolar 7458168 POPTR_003G126300v3 -26.64 LOC7472348 epidermis-specific secreted glycoprotein EP1 7472348 POPTR_011G110000v3 -25.27 LOC7478511 glucan endo-1,3-beta-glucosidase 7478511 POPTR_001G255100v3 -25.02 LOC7483567 dormancy-associated protein homolog 4 7483567 POPTR_003G070500v3 -24.99 LOC7464314 homeobox-leucine zipper protein ATHB-12 7464314 POPTR_012G023700v3 -24.91 LOC7454532 uncharacterized LOC7454532 7454532 POPTR_012G094400v3 -24.86 LOC7494463 uncharacterized LOC7494463 7494463 POPTR_008G061700v3 -24.76 LOC18095468 polyphenol oxidase, chloroplastic 18095468 POPTR_001G388900v3 -24.09 LOC7472351 epidermis-specific secreted glycoprotein EP1 7472351 POPTR_011G110500v3 -23.78 LOC7453944 GATA transcription factor 4 7453944 POPTR_002G142800v3 -23.63 LOC18095889 thioredoxin-like protein CXXS1 18095889 POPTR_001G416500v3 -23.27 LOC7485052 endogenous alpha-amylase/subtilisin inhibitor 7485052 POPTR_007G111500v3 -23.02 LOC18096165 protodermal factor 1 18096165 POPTR_002G060800v3 -22.75 LOC7464794 protodermal factor 1 7464794 POPTR_005G200900v3 -22.68 LOC112327940 uncharacterized LOC112327940 112327940 -22.47 LOC18097308 miraculin 18097308 POPTR_004G000400v3 -22.29 LOC18106964 rust resistance kinase Lr10 18106964 POPTR_017G034700v3 -22.10 LOC18100581 class V chitinase 18100581 POPTR_006G188400v3 -21.95 LOC7471119 putative beta-D-xylosidase 7471119 POPTR_008G108100v3 -21.67 LOC7486082 endogenous alpha-amylase/subtilisin inhibitor 7486082 POPTR_007G111800v3 -21.66 LOC18099013 uncharacterized LOC18099013 18099013 POPTR_005G058200v3 -21.57 LOC7497590 beta-galactosidase 7497590 POPTR_006G144500v3 -21.49 LOC7484381 low-temperature-induced 65 kDa protein 7484381 POPTR_012G141300v3 -21.41 LOC7497320 uncharacterized LOC7497320 7497320 POPTR_014G014500v3 -21.40 LOC7472135 chaperone protein dnaJ 11, chloroplastic 7472135 POPTR_009G131800v3 -21.23 LOC7496123 zeatin O-glucosyltransferase 7496123 POPTR_006G048200v3 -21.02 LOC7461695 kunitz trypsin inhibitor 2 7461695 POPTR_001G309900v3 -21.00 LOC7470970 photosystem II 10 kDa polypeptide, chloroplastic 7470970 POPTR_011G142300v3 -20.90 LOC7498090 basic endochitinase CHB4 7498090 POPTR_019G094100v3 -20.90 LOC7485479 ethylene-responsive transcription factor WIN1 7485479 POPTR_006G069400v3 -20.77 LOC7497748 uncharacterized LOC7497748 7497748 POPTR_007G003600v3 -20.75 LOC18104131 putative glycine-rich cell wall structural protein 1 18104131 POPTR_013G062200v3 -20.75 LOC7478518 protein GAST1 7478518 POPTR_001G254100v3 -20.71 LOC7471192 glycine-rich protein 5 7471192 POPTR_002G252200v3 -20.62 LOC7490642 chaperone protein dnaJ 11, chloroplastic 7490642 POPTR_002G020700v3 -20.61 LOC7488366 transcription factor MYB62 7488366 POPTR_008G122100v3 -20.48 LOC7470586 uncharacterized LOC7470586 7470586 POPTR_001G190700v3 -20.45 LOC7454978 photosystem II 10 kDa polypeptide, chloroplastic 7454978 POPTR_011G142200v3 -20.32 LOC7465525 acid beta-fructofuranosidase 7465525 POPTR_003G112600v3 -20.30 LOC7453636 chaperone protein dnaJ 11, chloroplastic 7453636 POPTR_004G172300v3 -20.21 LOC7477039 4-coumarate--CoA ligase-like 9 7477039 POPTR_010G057000v3 -20.10 LOC7485462 probable galactinol--sucrose galactosyltransferase 6 7485462 POPTR_006G065700v3 -19.84 LOC7456810 stem-specific protein TSJT1 7456810 POPTR_004G040600v3 -19.78 LOC7488407 MLP-like protein 328 7488407 POPTR_008G131300v3 -19.78 LOC18095762 photosystem II 10 kDa polypeptide, chloroplastic 18095762 POPTR_001G438800v3 -19.72 LOC7476361 GDSL esterase/lipase At5g45950 7476361 POPTR_004G051900v3 -19.61 LOC7477401 uncharacterized LOC7477401 7477401 POPTR_004G044300v3 -19.38 LOC7485051 alpha-amylase/subtilisin inhibitor 7485051 POPTR_007G111600v3 -19.25 LOC7454691 malate synthase, glyoxysomal 7454691 POPTR_015G092000v3 -19.24 LOC7491425 light-regulated protein 1, chloroplastic 7491425 POPTR_001G066400v3 -19.00 LOC7469178 NAD(P)H-quinone oxidoreductase subunit M, chloroplastic 7469178 POPTR_005G183000v3 -18.93 LOC18102998 stem-specific protein TSJT1 18102998 POPTR_011G049900v3 -18.78 LOC18095082 leucine-rich repeat extensin-like protein 3 18095082 POPTR_001G260200v3 -18.68 LOC7464286 thylakoid lumenal 17.4 kDa protein, chloroplastic 7464286 POPTR_012G018100v3 -18.57 LOC18097900 proline-rich protein 4 18097900 POPTR_004G168600v3 -18.51 LOC18106572 uncharacterized oxidoreductase At4g09670 18106572 POPTR_017G137300v3 -18.46 LOC7454719 protein SHOOT GRAVITROPISM 5 7454719 POPTR_015G096500v3 -18.41 LOC7482822 ethylene-responsive transcription factor ERF113 7482822 POPTR_001G067600v3 -18.35 LOC18095611 stem-specific protein TSJT1 18095611 POPTR_001G403000v3 -18.25 LOC18106247 NADPH-dependent aldo-keto reductase, chloroplastic 18106247 POPTR_016G102100v3 -18.10 LOC7490956 metallothiol transferase FosB 7490956 POPTR_001G171600v3 -18.09 LOC7470729 oleosin 16 kDa 7470729 POPTR_006G234900v3 -18.07 LOC7460796 repetitive proline-rich cell wall protein 7460796 POPTR_010G072200v3 -17.98 LOC18102048 probable mannitol dehydrogenase 18102048 POPTR_009G063300v3 -17.96 LOC7493352 EG45-like domain containing protein 7493352 POPTR_018G098200v3 -17.92 LOC7488594 cysteine proteinase inhibitor B 7488594 POPTR_002G235800v3 -17.85 LOC7454859 asparagine synthetase [glutamine-hydrolyzing] 1 7454859 POPTR_009G072900v3 -17.77 LOC7461739 uncharacterized LOC7461739 7461739 POPTR_002G152600v3 -17.70 LOC7477614 zinc-finger homeodomain protein 5 7477614 POPTR_005G227900v3 -17.67 LOC7496429 small heat shock protein, chloroplastic 7496429 POPTR_012G022400v3 -17.63 LOC7456215 uncharacterized LOC7456215 7456215 POPTR_001G334500v3 -17.44 LOC18108499 endochitinase EP3 18108499 POPTR_019G093900v3 -17.35 LOC7471736 mitotic spindle checkpoint protein BUBR1 7471736 POPTR_002G002900v3 -17.34 LOC7474182 homocysteine S-methyltransferase 3 7474182 POPTR_010G083600v3 -17.34 LOC7461601 uncharacterized protein At4g14100 7461601 POPTR_T094000v3 -17.25 LOC7454940 uncharacterized LOC7454940 7454940 POPTR_006G087700v3 -17.23 LOC7459996 membrane protein PM19L 7459996 POPTR_010G064200v3 -17.21 LOC7491108 uncharacterized LOC7491108 7491108 POPTR_009G019300v3 -17.21 LOC7497095 endochitinase PR4 7497095 POPTR_019G094000v3 -17.18 LOC7462344 stem-specific protein TSJT1 7462344 POPTR_011G122100v3 -17.11 LOC7484749 isochorismate synthase, chloroplastic 7484749 POPTR_012G070000v3 -17.10 LOC7469550 UDP-glycosyltransferase 74F2 7469550 POPTR_007G140500v3 -17.10 LOC7453998 uncharacterized LOC7453998 7453998 -17.05 LOC7494685 uncharacterized LOC7494685 7494685 POPTR_005G249700v3 -17.04 LOC18105288 caffeoylshikimate esterase 18105288 POPTR_014G129000v3 -17.00 LOC7496687 late embryogenesis abundant protein Lea5 7496687 POPTR_010G012100v3 -16.89 LOC7454855 mitogen-activated protein kinase kinase kinase 18 7454855 POPTR_009G073200v3 -16.83 LOC112327934 ricin-like 112327934 POPTR_006G027800v3 -16.78 LOC7470571 photosynthetic NDH subunit of subcomplex B 3, chloroplastic 7470571 POPTR_001G186800v3 -16.78 LOC7466252 non-specific lipid-transfer protein 1 7466252 POPTR_016G135400v3 -16.71 LOC7487723 GDSL esterase/lipase At5g33370 7487723 POPTR_013G051100v3 -16.71 LOC7492427 glu S.griseus protease inhibitor 7492427 POPTR_010G075400v3 -16.57 LOC18103898 peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic 18103898 POPTR_012G119800v3 -16.55 LOC7495323 uncharacterized protein ycf23 7495323 POPTR_011G080900v3 -16.54 LOC7484850 transcription factor MYB108 7484850 POPTR_008G101400v3 -16.53 LOC18095888 photosynthetic NDH subunit of lumenal location 3, chloroplastic 18095888 POPTR_001G416400v3 -16.52	Lower 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC7494393 22.0 kDa class IV heat shock protein 7494393 POPTR_013G089200v3 -44.91 LOC7496429 small heat shock protein, chloroplastic 7496429 POPTR_012G022400v3 -42.90 LOC18094241 heat shock 70 kDa protein 18094241 POPTR_001G042600v3 -42.78 LOC7479678 gibberellin-regulated protein 1 7479678 POPTR_002G022600v3 -38.04 LOC18096754 protein HOTHEAD 18096754 POPTR_003G039000v3 -32.63 LOC7455411 probable pectinesterase 53 7455411 POPTR_014G117100v3 -32.35 LOC18106465 heat shock protein 83 18106465 POPTR_017G146600v3 -31.88 LOC7463845 cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1 7463845 POPTR_001G265300v3 -31.23 LOC18097975 18.1 kDa class I heat shock protein 18097975 -30.95 LOC7465124 osmotin-like protein 7465124 POPTR_001G237600v3 -30.06 LOC7485724 transcription factor MYB48 7485724 POPTR_001G235500v3 -29.27 LOC7485270 EG45-like domain containing protein 7485270 POPTR_006G179300v3 -29.10 LOC7454971 class I heat shock protein 7454971 POPTR_006G093500v3 -28.90 LOC112326657 glycine-rich cell wall structural protein 1.8-like 112326657 POPTR_001G141800v3 -28.77 LOC7484902 uncharacterized LOC7484902 7484902 POPTR_012G111000v3 -28.58 LOC18104827 isoflavone 2'-hydroxylase 18104827 POPTR_014G021700v3 -28.50 LOC18098895 flavonoid 3'-monooxygenase 18098895 POPTR_005G045800v3 -27.68 LOC7482258 zinc finger protein GIS3 7482258 POPTR_010G140700v3 -27.57 LOC18094242 heat shock 70 kDa protein 18094242 POPTR_001G042700v3 -27.54 LOC112328776 uncharacterized LOC112328776 112328776 -27.39 LOC7473428 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 7473428 POPTR_008G157400v3 -27.38 LOC18110455 patatin-like protein 2 18110455 POPTR_019G015100v3 -27.36 LOC7475781 carboxymethylenebutenolidase homolog 7475781 POPTR_019G079000v3 -27.26 LOC18104880 uncharacterized LOC18104880 18104880 POPTR_014G027800v3 -27.22 LOC18102943 (3S,6E)-nerolidol synthase 1 18102943 POPTR_011G032300v3 -27.06 LOC7462237 17.9 kDa class II heat shock protein 7462237 POPTR_006G223900v3 -27.04 LOC7465527 protein YABBY 4 7465527 POPTR_003G112800v3 -27.04 LOC7475116 26.5 kDa heat shock protein, mitochondrial 7475116 POPTR_001G192600v3 -26.81 LOC7487006 protein NRT1/ PTR FAMILY 5.4 7487006 POPTR_001G027100v3 -26.68 LOC7492467 WAT1-related protein At1g43650 7492467 POPTR_005G192100v3 -26.58 LOC18102765 putative glycine-rich cell wall structural protein 1 18102765 POPTR_010G230400v3 -26.37 LOC7470074 36.4 kDa proline-rich protein 7470074 POPTR_018G126000v3 -26.14 LOC7475947 G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 7475947 POPTR_010G025700v3 -25.89 LOC7469845 bark storage protein A 7469845 POPTR_019G050200v3 -25.82 LOC7472606 UDP-glycosyltransferase 83A1 7472606 POPTR_004G123500v3 -25.37 LOC18108150 patatin-like protein 4 18108150 POPTR_T050800v3 -25.14 LOC7464041 BURP domain protein USPL1 7464041 POPTR_009G114300v3 -24.94 LOC7479202 23.6 kDa heat shock protein, mitochondrial 7479202 POPTR_003G109200v3 -24.94 LOC7493404 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 7493404 POPTR_018G109700v3 -24.92 LOC7459174 probable glutathione S-transferase 7459174 POPTR_001G437400v3 -24.85 LOC7456665 uncharacterized LOC7456665 7456665 POPTR_015G109100v3 -24.85 LOC7467387 18.1 kDa class I heat shock protein 7467387 POPTR_009G049900v3 -24.75 LOC7475946 G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 7475946 POPTR_010G025800v3 -24.68 LOC7498011 G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 7498011 POPTR_010G025500v3 -24.45 LOC18098217 hybrid signal transduction histidine kinase M 18098217 POPTR_004G212900v3 -24.42 LOC7470544 uncharacterized LOC7470544 7470544 POPTR_001G204300v3 -24.36 LOC7480952 cytochrome P450 71B36 7480952 POPTR_008G184400v3 -24.33 LOC7465518 14 kDa proline-rich protein DC2.15 7465518 POPTR_003G111400v3 -24.30 LOC7469930 putative axial regulator YABBY 2 7469930 POPTR_016G067300v3 -24.28 LOC7468108 uncharacterized LOC7468108 7468108 POPTR_010G147200v3 -24.02 LOC7493909 NAC domain-containing protein 71 7493909 POPTR_013G079700v3 -23.88 LOC18094550 cationic amino acid transporter 6, chloroplastic 18094550 POPTR_001G150700v3 -23.73 LOC18104420 NAD(P)H-quinone oxidoreductase subunit T, chloroplastic 18104420 POPTR_013G109000v3 -23.69 LOC18106628 15.7 kDa heat shock protein, peroxisomal 18106628 POPTR_017G130700v3 -23.68 LOC7471940 abscisic acid 8'-hydroxylase 1 7471940 POPTR_002G033000v3 -23.66 LOC18100303 ethylene-responsive transcription factor ERF017 18100303 POPTR_006G138800v3 -23.36 LOC7467676 class I heat shock protein 7467676 POPTR_T125900v3 -23.20 LOC112326660 glycine-rich cell wall structural protein 1.8-like 112326660 POPTR_001G141700v3 -23.02 LOC7458915 butyrate--CoA ligase AAE11, peroxisomal 7458915 POPTR_016G034800v3 -22.97 LOC7472734 cell division control protein 48 homolog C 7472734 POPTR_001G097600v3 -22.91 LOC7494528 heat shock protein 83 7494528 POPTR_004G073600v3 -22.91 LOC18097063 endoglucanase 1 18097063 POPTR_003G147600v3 -22.86 LOC7477819 transcription factor MYC4 7477819 POPTR_001G083500v3 -22.69 LOC7466474 uncharacterized LOC7466474 7466474 POPTR_002G084600v3 -22.65 LOC18109033 18.1 kDa class I heat shock protein 18109033 -22.56 LOC18098202 ubiquitin-like protein 5 18098202 POPTR_004G211600v3 -22.48 LOC7493921 uncharacterized LOC7493921 7493921 POPTR_013G085300v3 -22.42 LOC112326528 uncharacterized LOC112326528 112326528 -22.35 LOC7477210 transcription factor HY5-like 7477210 POPTR_010G004200v3 -22.34 LOC7482599 cytochrome P450 71A1 7482599 POPTR_016G137600v3 -22.31 LOC7463577 protochlorophyllide-dependent translocon component 52, chloroplastic 7463577 POPTR_003G219000v3 -22.07 LOC112328045 uncharacterized LOC112328045 112328045 -22.02 LOC18104124 uncharacterized LOC18104124 18104124 POPTR_013G059500v3 -21.92 LOC7470104 sodium transporter HKT1 7470104 POPTR_018G132200v3 -21.91 LOC18097977 18.1 kDa class I heat shock protein 18097977 POPTR_004G187200v3 -21.82 LOC7485893 uncharacterized LOC7485893 7485893 -21.82 LOC7454912 WAT1-related protein At2g37460 7454912 POPTR_006G082700v3 -21.74 LOC18100161 acylphosphatase 18100161 -21.66 LOC7460940 protein FAM32A-like 7460940 POPTR_005G174400v3 -21.64 LOC7481611 18.1 kDa class I heat shock protein 7481611 POPTR_010G175200v3 -21.64 LOC7494466 18.1 kDa class I heat shock protein 7494466 POPTR_008G062300v3 -21.60 LOC7485716 uncharacterized LOC7485716 7485716 POPTR_001G237300v3 -21.57 LOC18104869 subtilisin-like protease SBT1.9 18104869 POPTR_014G026500v3 -21.46 LOC7463460 probable LRR receptor-like serine/threonine-protein kinase At3g47570 7463460 POPTR_010G228300v3 -21.39 LOC7470743 carotenoid cleavage dioxygenase 8 homolog B, chloroplastic 7470743 POPTR_006G238500v3 -21.32 LOC7479985 cytochrome P450 94A1 7479985 POPTR_002G042200v3 -21.32 LOC7474945 cytochrome P450 94C1 7474945 POPTR_009G145400v3 -21.21 LOC7496589 linoleate 13S-lipoxygenase 2-1, chloroplastic 7496589 POPTR_017G046200v3 -21.17 LOC7463075 vignain 7463075 POPTR_015G087400v3 -20.99 LOC7455674 glucan endo-1,3-beta-glucosidase 7 7455674 POPTR_014G182000v3 -20.99 LOC7455941 pathogen-related protein 7455941 POPTR_011G108900v3 -20.99 LOC18102191 18.1 kDa class I heat shock protein 18102191 POPTR_009G147900v3 -20.90 LOC7483571 17.4 kDa class III heat shock protein 7483571 POPTR_003G071100v3 -20.87 LOC7458129 ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 7458129 POPTR_010G200500v3 -20.81 LOC18098005 putative phospholipid:diacylglycerol acyltransferase 2 18098005 POPTR_004G190100v3 -20.80 LOC18100302 ethylene-responsive transcription factor ERF017 18100302 POPTR_006G138700v3 -20.80 LOC7470735 lachrymatory-factor synthase 7470735 POPTR_006G237100v3 -20.73 LOC18094704 protein TIFY 10A 18094704 POPTR_001G166200v3 -20.71 LOC7494712 glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic 7494712 POPTR_005G254100v3 -20.70 LOC7470027 fructose-bisphosphate aldolase 1, chloroplastic 7470027 POPTR_004G162400v3 -20.67	Lower 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC18104338 bark storage protein A 18104338 POPTR_013G100800v3 -39.55 LOC18104339 bark storage protein A 18104339 POPTR_013G100700v3 -36.33 LOC18107353 leucine-rich repeat extensin-like protein 3 18107353 POPTR_017G100600v3 -33.75 LOC7470239 uncharacterized LOC7470239 7470239 POPTR_004G051500v3 -32.44 LOC112328050 36.4 kDa proline-rich protein-like 112328050 POPTR_006G008300v3 -29.63 LOC18104481 sucrose transport protein SUC8 18104481 POPTR_013G115200v3 -27.95 LOC7495765 TATA-binding protein-associated factor 2N 7495765 POPTR_006G251300v3 -27.73 LOC18097680 proline-rich protein 4 18097680 POPTR_004G114400v3 -26.49 LOC18104906 uncharacterized LOC18104906 18104906 POPTR_014G030700v3 -26.01 LOC7463760 flavonoid 3'-monooxygenase 7463760 POPTR_018G051300v3 -25.96 LOC112328649 uncharacterized LOC112328649 112328649 -25.55 LOC7478832 putative indole-3-acetic acid-amido synthetase GH3.9 7478832 POPTR_002G206400v3 -25.14 LOC7457966 glutaredoxin-C11 7457966 POPTR_014G134200v3 -24.94 LOC7480791 putative dynamin-related protein 4A 7480791 POPTR_003G024900v3 -24.78 LOC7462890 phosphatidylserine decarboxylase proenzyme 3 7462890 POPTR_002G127000v3 -24.45 LOC112327364 formin-2-like 112327364 POPTR_004G114300v3 -24.07 LOC18100050 protein SCARECROW 18100050 POPTR_006G114200v3 -23.84 LOC18100462 probable RNA-dependent RNA polymerase 5 18100462 POPTR_006G164400v3 -23.73 LOC7472673 3-oxo-Delta(4,5)-steroid 5-beta-reductase 7472673 POPTR_002G120700v3 -23.72 LOC7462826 protein SUPPRESSOR OF GENE SILENCING 3 homolog 7462826 POPTR_003G188100v3 -23.49 LOC7496106 uncharacterized LOC7496106 7496106 POPTR_006G045300v3 -23.41 LOC7473878 protein DMP10 7473878 POPTR_013G027200v3 -23.08 LOC18100331 flavonoid 3'-monooxygenase 18100331 POPTR_006G141400v3 -23.06 LOC18095305 gibberellin-regulated protein 14 18095305 POPTR_001G350600v3 -22.92 LOC7455365 NDR1/HIN1-like protein 12 7455365 POPTR_014G106100v3 -22.90 LOC7479079 kirola 7479079 POPTR_004G020000v3 -22.83 LOC7467972 thaumatin-like protein 1 7467972 POPTR_001G220900v3 -22.39 LOC18103683 transcription repressor KAN1 18103683 POPTR_012G042100v3 -22.39 LOC7461263 MLP-like protein 28 7461263 POPTR_017G051100v3 -22.34 LOC7475437 cell wall / vacuolar inhibitor of fructosidase 1 7475437 POPTR_010G063000v3 -22.24 LOC18111301 monothiol glutaredoxin-S9 18111301 POPTR_002G208400v3 -22.12 LOC18099453 non-specific lipid-transfer protein 2 18099453 -22.00 LOC7464012 protein CASPARIAN STRIP INTEGRITY FACTOR 1 7464012 POPTR_009G119900v3 -21.57 LOC7470074 36.4 kDa proline-rich protein 7470074 POPTR_018G126000v3 -21.52 LOC7457876 tetraspanin-6 7457876 POPTR_008G041600v3 -21.41 LOC7486086 ankyrin repeat-containing protein ITN1 7486086 POPTR_007G110000v3 -21.28 LOC7454690 uncharacterized LOC7454690 7454690 POPTR_015G091900v3 -21.18 LOC7477203 late embryogenesis abundant protein D-29 7477203 POPTR_010G002600v3 -21.16 LOC18097400 beta-glucosidase 46 18097400 POPTR_004G019300v3 -21.15 LOC7485290 protein SMAX1-LIKE 3 7485290 POPTR_006G204500v3 -20.81 LOC7471481 uncharacterized LOC7471481 7471481 POPTR_008G146500v3 -20.77 LOC7491733 protein SHORT-ROOT 7491733 POPTR_007G132000v3 -20.58 LOC7468989 glucan endo-1,3-beta-glucosidase, basic isoform 7468989 POPTR_016G057600v3 -20.49 LOC18099825 uncharacterized LOC18099825 18099825 POPTR_006G042300v3 -20.46 LOC7481846 subtilisin-like protease SBT1.3 7481846 POPTR_015G133800v3 -20.44 LOC112324670 butyrate--CoA ligase AAE11, peroxisomal-like 112324670 POPTR_017G138400v3 -20.44 LOC7460785 wall-associated receptor kinase-like 10 7460785 POPTR_010G040500v3 -20.43 LOC7476404 probable LRR receptor-like serine/threonine-protein kinase At4g37250 7476404 POPTR_005G142300v3 -20.35 LOC7482588 non-specific lipid-transfer protein 1 7482588 POPTR_016G135800v3 -20.29 LOC18104130 glycine-rich protein DOT1 18104130 POPTR_013G062100v3 -20.23 LOC18095006 AAA-ATPase At4g25835 18095006 POPTR_001G231200v3 -20.21 LOC112324098 uncharacterized LOC112324098 112324098 -20.08 LOC18094781 uncharacterized LOC18094781 18094781 POPTR_001G188900v3 -20.06 LOC7462301 dehydration-responsive element-binding protein 3 7462301 POPTR_006G238600v3 -19.97 LOC7478165 dynamin-related protein 4C 7478165 POPTR_003G024800v3 -19.95 LOC18103438 probable glutathione S-transferase parC 18103438 POPTR_011G140600v3 -19.80 LOC7479222 21 kDa protein 7479222 POPTR_003G113700v3 -19.79 LOC7483606 probable LRR receptor-like serine/threonine-protein kinase At1g29720 7483606 POPTR_011G075400v3 -19.77 LOC18094669 pectinesterase 18094669 POPTR_001G162500v3 -19.73 LOC112328379 uncharacterized LOC112328379 112328379 -19.71 LOC112328875 uncharacterized LOC112328875 112328875 -19.70 LOC112324099 uncharacterized LOC112324099 112324099 -19.69 LOC7461315 protein SIEVE ELEMENT OCCLUSION B 7461315 POPTR_017G071000v3 -19.62 LOC112327921 uncharacterized LOC112327921 112327921 -19.57 LOC7485454 cation/H(+) antiporter 20 7485454 POPTR_006G054700v3 -19.52 LOC18104336 bark storage protein B 18104336 POPTR_013G101000v3 -19.52 LOC18103796 protein SIEVE ELEMENT OCCLUSION B 18103796 POPTR_012G090400v3 -19.51 LOC112325615 uncharacterized LOC112325615 112325615 -19.49 LOC7456784 squamosa promoter-binding-like protein 3 7456784 POPTR_004G046700v3 -19.49 LOC18099678 jacalin-related lectin 3 18099678 POPTR_005G232400v3 -19.44 LOC18107608 putative GATA transcription factor 22 18107608 POPTR_018G053600v3 -19.27 LOC18108209 uncharacterized LOC18108209 18108209 POPTR_019G027100v3 -19.19 LOC7459521 glycine-rich protein 5 7459521 POPTR_002G252400v3 -19.17 LOC7463603 peroxidase A2 7463603 POPTR_003G214800v3 -19.13 LOC18095330 protein SIEVE ELEMENT OCCLUSION B 18095330 POPTR_001G340500v3 -19.13 LOC7489106 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 7489106 POPTR_011G156600v3 -19.11 LOC18104131 putative glycine-rich cell wall structural protein 1 18104131 POPTR_013G062200v3 -19.10 LOC7486891 protein SMAX1-LIKE 3 7486891 POPTR_008G017600v3 -19.08 LOC18110429 putative UPF0481 protein At3g02645 18110429 POPTR_003G208700v3 -18.91 LOC7464036 BURP domain-containing protein BNM2A 7464036 POPTR_009G114600v3 -18.87 LOC7476748 21 kDa protein 7476748 POPTR_015G128300v3 -18.80 LOC7490961 TATA-binding protein-associated factor 2N 7490961 POPTR_001G172700v3 -18.78 LOC7490311 probable copper-transporting ATPase HMA5 7490311 POPTR_001G105800v3 -18.75 LOC7465124 osmotin-like protein 7465124 POPTR_001G237600v3 -18.74 LOC7492407 CLAVATA3/ESR (CLE)-related protein 25 7492407 POPTR_010G039800v3 -18.73 LOC18100688 pectinesterase 18100688 POPTR_T148200v3 -18.67 LOC18096545 CLAVATA3/ESR (CLE)-related protein 41 18096545 POPTR_002G241300v3 -18.59 LOC7465409 zinc finger protein 1 7465409 POPTR_018G021400v3 -18.58 LOC7457887 salt stress-induced hydrophobic peptide ESI3 7457887 POPTR_008G044300v3 -18.57 LOC18104485 protein DETOXIFICATION 54 18104485 POPTR_013G115600v3 -18.56 LOC7486322 epoxide hydrolase A 7486322 POPTR_005G081000v3 -18.55 LOC7465518 14 kDa proline-rich protein DC2.15 7465518 POPTR_003G111400v3 -18.49 LOC7463179 probable calcium-binding protein CML29 7463179 POPTR_002G088500v3 -18.47 LOC18107806 pectinesterase 18107806 POPTR_001G162600v3 -18.40 LOC112328516 uncharacterized LOC112328516 112328516 -18.35 LOC7459093 probable transmembrane ascorbate ferrireductase 3 7459093 POPTR_010G102400v3 -18.33 LOC7463044 expansin-A10 7463044 POPTR_004G123200v3 -18.30 LOC7468487 probable pectinesterase/pectinesterase inhibitor 35 7468487 POPTR_014G149700v3 -18.27 LOC7467040 cytochrome P450 78A9 7467040 POPTR_001G083900v3 -18.25 LOC7454978 photosystem II 10 kDa polypeptide, chloroplastic 7454978 POPTR_011G142200v3 -18.25	Lower 100 Genes Symbol Function* Entrez Gene ID* Other ID PC ndhB NADH dehydrogenase subunit 2 4929763 Poptr_cp094 -23.22 ycf2 Ycf2 4929768 Poptr_cp098 -23.06 LOC18104481 sucrose transport protein SUC8 18104481 POPTR_013G115200v3 -21.54 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit 4929677 Poptr_cp030 -20.97 ndhB NADH dehydrogenase subunit 2 4929721 Poptr_cp069 -20.88 rpoC1 RNA polymerase beta' subunit 4929644 Poptr_cp011 -20.83 Poptr_cpR019 tRNA-Val 4929673 Poptr_cpR019 -20.81 LOC112327602 uncharacterized LOC112327602 112327602 -20.66 LOC7491169 xyloglucan endotransglucosylase/hydrolase protein 31 7491169 POPTR_009G006600v3 -20.19 atpB ATP synthase CF1 beta subunit 4929676 Poptr_cp029 -20.12 LOC112323823 DNA-directed RNA polymerase subunit beta-like 112323823 -20.05 petA cytochrome f 4929683 Poptr_cp036 -20.01 ycf2 Ycf2 4929717 Poptr_cp066 -19.63 psbE photosystem II protein V 4929687 Poptr_cp040 -19.29 LOC18105360 ATP synthase subunit a 18105360 POPTR_014G168000v3 -19.23 psaJ photosystem I subunit IX 4929692 Poptr_cp043 -19.14 Poptr_cp018 hypothetical protein 4929657 Poptr_cp018 -19.12 Poptr_cpR041 tRNA-Ile 4929756 Poptr_cpR041 -19.01 psbA photosystem II protein D1 4929629 Poptr_cp001 -18.92 LOC7489433 uncharacterized LOC7489433 7489433 POPTR_018G104500v3 -18.91 clpP ATP-dependent Clp protease proteolytic subunit 4929698 Poptr_cp048 -18.86 psbJ photosystem II protein J 4929684 Poptr_cp037 -18.84 rps12 ribosomal protein S12 4929696 Poptr_cp091 -18.78 ndhE NADH dehydrogenase subunit 4L 4929742 Poptr_cp081 -18.58 LOC18101860 monothiol glutaredoxin-S2 18101860 POPTR_008G214600v3 -18.54 ccsA CcsA 4929739 Poptr_cp078 -18.51 trnA tRNA-Ala 4929729 Poptr_cpR028 -18.48 cemA envelope membrane protein 4929682 Poptr_cp035 -18.46 rpoC2 RNA polymerase beta'' subunit 4929643 Poptr_cp010 -18.32 psaA photosystem I P700 chlorophyll a apoprotein A1 4929663 Poptr_cp022 -18.29 LOC18095065 18.2 kDa class I heat shock protein 18095065 POPTR_001G254700v3 -18.21 ndhI NADH dehydrogenase subunit I 4929744 Poptr_cp083 -18.03 rpl20 ribosomal protein L20 4929695 Poptr_cp046 -18.03 rps4 ribosomal protein S4 4929666 Poptr_cp024 -17.97 ndhK NADH dehydrogenase subunit K 4929671 Poptr_cp026 -17.92 rpoB RNA polymerase beta subunit 4929645 Poptr_cp012 -17.84 rps18 ribosomal protein S18 4929694 Poptr_cp045 -17.84 rpl2 ribosomal protein L2 4929771 Poptr_cp100 -17.78 rps12 ribosomal protein S12 4929628 Poptr_cp071 -17.75 atpE ATP synthase CF1 epsilon subunit 4929675 Poptr_cp028 -17.68 rps7 ribosomal protein S7 4929722 Poptr_cp070 -17.67 LOC7464041 BURP domain protein USPL1 7464041 POPTR_009G114300v3 -17.55 LOC112326578 uncharacterized LOC112326578 112326578 -17.53 trnK tRNA-Lys 4929630 Poptr_cpR002 -17.40 Poptr_cpR027 tRNA-Ile 4929727 Poptr_cpR027 -17.38 LOC18104336 bark storage protein B 18104336 POPTR_013G101000v3 -17.37 LOC7459902 protein GLUTAMINE DUMPER 5 7459902 POPTR_006G267900v3 -17.34 trnA tRNA-Ala 4929755 Poptr_cpR040 -17.25 LOC18094550 cationic amino acid transporter 6, chloroplastic 18094550 POPTR_001G150700v3 -17.11 LOC18097015 36.4 kDa proline-rich protein 18097015 POPTR_003G111300v3 -17.01 ndhG NADH dehydrogenase subunit 6 4929743 Poptr_cp082 -16.98 LOC18103031 uncharacterized LOC18103031 18103031 POPTR_011G053300v3 -16.94 LOC112327508 nicotianamine synthase-like 112327508 POPTR_005G017300v3 -16.92 ndhC NADH dehydrogenase subunit 3 4929672 Poptr_cp027 -16.90 psaC photosystem I subunit VII 4929741 Poptr_cp080 -16.89 psaB photosystem I P700 chlorophyll a apoprotein A2 4929662 Poptr_cp021 -16.77 LOC7473268 luminal-binding protein 4 7473268 POPTR_013G018000v3 -16.63 LOC18097894 auxin-responsive protein SAUR24 18097894 POPTR_004G165300v3 -16.50 Poptr_cpR005 tRNA-Gly 4929636 Poptr_cpR005 -16.38 LOC18094242 heat shock 70 kDa protein 18094242 POPTR_001G042700v3 -16.29 LOC7492393 galactinol synthase 1 7492393 POPTR_010G042000v3 -16.19 ndhJ NADH dehydrogenase subunit J 4929670 Poptr_cp025 -16.15 LOC18104619 uncharacterized LOC18104619 18104619 POPTR_013G129900v3 -16.08 LOC7459174 probable glutathione S-transferase 7459174 POPTR_001G437400v3 -16.06 rps7 ribosomal protein S7 4929762 Poptr_cp093 -15.86 LOC112325098 monothiol glutaredoxin-S2-like 112325098 POPTR_018G049400v3 -15.85 Poptr_cpR012 tRNA-Ser 4929656 Poptr_cpR012 -15.84 ycf4 photosystem I assembly protein Ycf4 4929681 Poptr_cp034 -15.83 LOC7492461 vacuolar iron transporter homolog 2 7492461 POPTR_005G190800v3 -15.71 LOC7475437 cell wall / vacuolar inhibitor of fructosidase 1 7475437 POPTR_010G063000v3 -15.60 LOC7463625 homeobox protein SBH1 7463625 POPTR_004G004700v3 -15.52 psbK photosystem II protein K 4929633 Poptr_cp003 -15.45 petB cytochrome b6 4929703 Poptr_cp053 -15.41 psbC photosystem II 44 kDa protein 4929655 Poptr_cp017 -15.37 rps14 ribosomal protein S14 4929661 Poptr_cp020 -15.37 rpl33 ribosomal protein L33 4929693 Poptr_cp044 -15.30 LOC18108550 uncharacterized LOC18108550 18108550 POPTR_019G099600v3 -15.21 ycf3 photosystem I assembly protein Ycf3 4929664 Poptr_cp023 -15.18 ndhD NADH dehydrogenase subunit 4 4929740 Poptr_cp079 -15.16 psbH photosystem II protein H 4929702 Poptr_cp052 -15.15 LOC112327503 nicotianamine synthase-like 112327503 POPTR_005G014300v3 -15.13 psbD photosystem II protein D2 4929654 Poptr_cp016 -15.12 LOC7494289 auxin-responsive protein SAUR50 7494289 POPTR_009G126000v3 -15.11 LOC112323706 small nucleolar RNA U3 112323706 -14.99 LOC7464037 uncharacterized LOC7464037 7464037 POPTR_009G114400v3 -14.93 LOC112323707 small nucleolar RNA U3 112323707 -14.91 LOC7487519 indole-3-acetate O-methyltransferase 1 7487519 POPTR_001G359000v3 -14.91 LOC112328887 uncharacterized LOC112328887 112328887 -14.88 LOC7463180 nitrate reductase [NADH] 7463180 POPTR_002G088600v3 -14.83 psaI photosystem I subunit VIII 4929680 Poptr_cp033 -14.82 LOC18101857 monothiol glutaredoxin-S2 18101857 POPTR_008G214800v3 -14.77 ndhH NADH dehydrogenase subunit 7 4929746 Poptr_cp085 -14.71 petD cytochrome b6/f complex subunit IV 4929704 Poptr_cp054 -14.65 LOC7455905 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 7455905 POPTR_011G066400v3 -14.63 LOC7455621 F-box/kelch-repeat protein At1g15670 7455621 POPTR_006G196900v3 -14.61 LOC7455042 exopolyphosphatase PRUNE1 7455042 POPTR_011G153800v3 -14.59 LOC7468066 ammonium transporter 2 7468066 POPTR_006G102800v3 -14.57 LOC112325374 U1 spliceosomal RNA 112325374 -14.57 rps19 ribosomal protein S19 4929772 Poptr_cp101 -14.51 petG cytochrome b6/f complex subunit V 4929689 Poptr_cp042 -14.51	Lower 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC7496928 probable isoaspartyl peptidase/L-asparaginase 2 7496928 POPTR_014G022900v3 -25.34 LOC7468989 glucan endo-1,3-beta-glucosidase, basic isoform 7468989 POPTR_016G057600v3 -19.47 LOC7454948 L-ascorbate peroxidase, cytosolic 7454948 POPTR_006G089000v3 -17.79 LOC18104574 cytochrome P450 82G1 18104574 POPTR_013G125300v3 -17.29 LOC7465565 nodulation receptor kinase 7465565 POPTR_007G004700v3 -16.41 LOC7459891 uncharacterized LOC7459891 7459891 POPTR_018G130300v3 -15.78 LOC18108447 metalloendoproteinase 2-MMP 18108447 POPTR_019G073800v3 -15.77 LOC7484582 receptor-like protein kinase FERONIA 7484582 POPTR_017G097500v3 -15.61 LOC18110355 receptor-like protein kinase FERONIA 18110355 POPTR_017G097800v3 -15.33 LOC18108208 uncharacterized LOC18108208 18108208 POPTR_019G027000v3 -15.23 LOC7490721 heavy metal-associated isoprenylated plant protein 30 7490721 POPTR_001G452400v3 -15.02 LOC7462301 dehydration-responsive element-binding protein 3 7462301 POPTR_006G238600v3 -14.96 LOC7459174 probable glutathione S-transferase 7459174 POPTR_001G437400v3 -14.83 LOC18094040 omega-hydroxypalmitate O-feruloyl transferase 18094040 POPTR_001G128100v3 -14.64 LOC7472993 dirigent protein 23 7472993 POPTR_001G214600v3 -14.48 LOC18110625 uncharacterized LOC18110625 18110625 POPTR_019G028800v3 -14.44 LOC18094937 thaumatin-like protein 1 18094937 POPTR_001G221900v3 -14.37 LOC112324174 uncharacterized LOC112324174 112324174 -14.29 LOC18097897 60S ribosomal protein L23 18097897 POPTR_004G166200v3 -14.26 rpl2 ribosomal protein L2 4929714 Poptr_cp064 -14.25 LOC7456838 phenolic glucoside malonyltransferase 1 7456838 -14.23 LOC7458755 aldehyde dehydrogenase family 2 member C4 7458755 POPTR_018G075000v3 -14.09 LOC7484626 non-specific lipid-transfer protein 1 7484626 POPTR_006G108100v3 -14.08 LOC18102095 gallate 1-beta-glucosyltransferase 18102095 POPTR_009G095300v3 -14.02 LOC7462249 glutaredoxin-C6 7462249 POPTR_006G226900v3 -13.90 LOC7464826 protein DETOXIFICATION 41 7464826 POPTR_005G207500v3 -13.79 LOC7472470 non-specific lipid-transfer protein 1 7472470 POPTR_016G136000v3 -13.66 LOC18104485 protein DETOXIFICATION 54 18104485 POPTR_013G115600v3 -13.59 LOC18094720 putative receptor-like protein kinase At1g72540 18094720 POPTR_001G168000v3 -13.45 LOC7497272 cytochrome P450 78A3 7497272 POPTR_002G175200v3 -13.42 Poptr_cpR038 4929753 Poptr_cpR038 -13.32 LOC18094938 thaumatin-like protein 1 18094938 POPTR_001G221800v3 -13.12 LOC18104338 bark storage protein A 18104338 POPTR_013G100800v3 -13.10 LOC18103379 MLO-like protein 11 18103379 POPTR_011G121600v3 -13.04 LOC7488718 abscisic acid receptor PYL4 7488718 POPTR_016G125400v3 -13.01 LOC18108207 uncharacterized LOC18108207 18108207 POPTR_019G026900v3 -12.98 rpl2 ribosomal protein L2 4929771 Poptr_cp100 -12.87 LOC7490066 gallate 1-beta-glucosyltransferase 7490066 POPTR_009G095100v3 -12.74 LOC112325615 uncharacterized LOC112325615 112325615 -12.67 LOC18106624 glutamine synthetase cytosolic isozyme 1 18106624 POPTR_017G131100v3 -12.66 LOC7488106 dof zinc finger protein DOF3.6 7488106 POPTR_008G055100v3 -12.65 LOC7484367 protein DETOXIFICATION 35 7484367 POPTR_012G144900v3 -12.48 LOC18106059 anthocyanidin 3-O-glucosyltransferase 2 18106059 POPTR_016G017100v3 -12.46 LOC7477438 LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.4 7477438 POPTR_004G097100v3 -12.45 LOC18095169 serine carboxypeptidase-like 18 18095169 POPTR_001G291800v3 -12.45 LOC7466021 WD repeat-containing protein LWD1 7466021 POPTR_006G209000v3 -12.39 LOC18109505 uncharacterized LOC18109505 18109505 -12.38 LOC7458076 cytochrome P450 71A1 7458076 POPTR_012G090000v3 -12.37 LOC7483928 leucoanthocyanidin reductase 7483928 POPTR_008G116500v3 -12.33 LOC18096192 putative wall-associated receptor kinase-like 16 18096192 POPTR_002G076000v3 -12.10 LOC18109378 heavy metal-associated isoprenylated plant protein 30 18109378 POPTR_011G149500v3 -11.98 LOC112324367 cell surface glycoprotein 1-like 112324367 -11.93 LOC18098005 putative phospholipid:diacylglycerol acyltransferase 2 18098005 POPTR_004G190100v3 -11.90 LOC18110102 rust resistance kinase Lr10 18110102 POPTR_012G003100v3 -11.87 LOC7480382 probable carboxylesterase 18 7480382 POPTR_001G459400v3 -11.71 LOC18109602 putative receptor-like protein kinase At4g00960 18109602 POPTR_004G026300v3 -11.68 LOC7492298 transcription factor MYB114 7492298 POPTR_006G221200v3 -11.57 LOC7494275 aquaporin PIP1-1 7494275 POPTR_009G127900v3 -11.56 LOC7488587 dCTP pyrophosphatase 1 7488587 POPTR_002G235000v3 -11.52 LOC18110744 cytochrome P450 81D11 18110744 POPTR_T096600v3 -11.50 LOC18109964 uncharacterized LOC18109964 18109964 POPTR_T055700v3 -11.48 LOC7463201 uncharacterized LOC7463201 7463201 POPTR_002G092900v3 -11.46 LOC7487268 L-type lectin-domain containing receptor kinase IV.1 7487268 POPTR_006G088900v3 -11.46 LOC18108209 uncharacterized LOC18108209 18108209 POPTR_019G027100v3 -11.46 LOC7482588 non-specific lipid-transfer protein 1 7482588 POPTR_016G135800v3 -11.44 LOC112327231 DNA ligase 1-like 112327231 POPTR_004G206700v3 -11.43 LOC7465006 enolase-phosphatase E1 7465006 POPTR_T072500v3 -11.40 LOC112327707 5.8S ribosomal RNA 112327707 -11.35 LOC18105663 acidic endochitinase 18105663 POPTR_015G024100v3 -11.31 LOC7467597 glutathione S-transferase L3 7467597 POPTR_016G083500v3 -11.29 Poptr_cpR017 tRNA-Leu 4929668 Poptr_cpR017 -11.24 LOC7461821 transcription factor bHLH30 7461821 POPTR_002G105300v3 -11.22 LOC18102534 protein indeterminate-domain 5, chloroplastic 18102534 POPTR_010G099200v3 -11.21 LOC18102145 AAA-ATPase At3g50940 18102145 POPTR_T171900v3 -11.21 LOC7494558 cinnamoyl-CoA reductase-like SNL6 7494558 POPTR_004G105000v3 -11.19 LOC112323790 uncharacterized LOC112323790 112323790 -11.17 LOC18102584 uncharacterized LOC18102584 18102584 -11.16 LOC7475620 leucoanthocyanidin reductase 7475620 POPTR_015G050200v3 -11.14 LOC7465984 cinnamoyl-CoA reductase-like SNL6 7465984 POPTR_006G178700v3 -11.14 LOC18096734 ABC transporter C family member 8 18096734 POPTR_003G034700v3 -11.12 LOC18094936 thaumatin-like protein 1 18094936 POPTR_001G221700v3 -11.01 LOC18094933 thaumatin-like protein 1 18094933 POPTR_001G221400v3 -11.01 LOC18099641 protein DETOXIFICATION 41 18099641 POPTR_005G207600v3 -10.99 LOC7485066 uncharacterized LOC7485066 7485066 POPTR_007G109700v3 -10.97 LOC18099992 L-type lectin-domain containing receptor kinase IV.1 18099992 POPTR_T083600v3 -10.97 LOC18104819 uncharacterized LOC18104819 18104819 POPTR_014G020900v3 -10.94 LOC18102719 dof zinc finger protein DOF3.6 18102719 POPTR_010G205400v3 -10.87 clpP ATP-dependent Clp protease proteolytic subunit 4929698 Poptr_cp048 -10.77 Poptr_cpR030 4929731 Poptr_cpR030 -10.76 LOC7494570 cytochrome P450 82G1 7494570 POPTR_004G106600v3 -10.74 LOC18103048 squamosa promoter-binding-like protein 3 18103048 POPTR_011G055900v3 -10.72 LOC7496829 UDP-glycosyltransferase 90A1 7496829 POPTR_001G348100v3 -10.72 LOC18108365 protein DETOXIFICATION 29 18108365 POPTR_019G063500v3 -10.71 LOC18098616 dnaJ homolog subfamily B member 3 18098616 POPTR_005G020300v3 -10.69 LOC7492142 STS14 protein 7492142 POPTR_005G130100v3 -10.69 LOC18101383 uncharacterized LOC18101383 18101383 -10.67 LOC7494361 UDP-glycosyltransferase 88A1 7494361 POPTR_004G069600v3 -10.64 LOC7480140 salicylate carboxymethyltransferase 7480140 POPTR_007G021300v3 -10.55 LOC18106527 silicon efflux transporter LSI2 18106527 POPTR_017G141600v3 -10.54 LOC7492088 alkane hydroxylase MAH1 7492088 POPTR_005G094500v3 -10.52