Illumina HiSeq 2500 paired end sequencing; Effect of heat stress on developing wheat grain
External Id SAMEA6235356 | Submitter Id E-MTAB-8520:Sample 4 | age 10 days post anthesis | environmental stress control | sample name E-MTAB-8520:Sample 4
Illumina HiSeq 2500 paired end sequencing; Effect of heat stress on developing wheat grain
External Id SAMEA6235362 | Submitter Id E-MTAB-8520:Sample 11 | age 14 days post anthesis | environmental stress control | sample name E-MTAB-8520:Sample 11
Illumina HiSeq 2500 paired end sequencing; Effect of heat stress on developing wheat grain
External Id SAMEA6235363 | Submitter Id E-MTAB-8520:Sample 9 | age 14 days post anthesis | environmental stress control | sample name E-MTAB-8520:Sample 9
Illumina HiSeq 2500 paired end sequencing; Effect of heat stress on developing wheat grain
External Id SAMEA6235368 | Submitter Id E-MTAB-8520:Sample 2 | age 6 days post anthesis | environmental stress control | sample name E-MTAB-8520:Sample 2
Illumina HiSeq 2500 paired end sequencing; Effect of heat stress on developing wheat grain
External Id SAMEA6235361 | Submitter Id E-MTAB-8520:Sample 10 | age 14 days post anthesis | environmental stress control | sample name E-MTAB-8520:Sample 10
Illumina HiSeq 2500 paired end sequencing; Effect of heat stress on developing wheat grain
External Id SAMEA6235358 | Submitter Id E-MTAB-8520:Sample 6 | age 10 days post anthesis | environmental stress warm/hot temperature regimen | sample name E-MTAB-8520:Sample 6
2 SRP173230 Characterization of QTL and eQTL linked with early Fusarium graminearum infection and deoxynivalenol levels in a Wuhan -1 x Nyubai doubled-haploid wheat population at two days post inoculation
cultivar BIO_4036 | cultivar_category Experimental line | Fusarium_head_blight_resistance_group Resistant | geo_loc_name France | treatment point inoculation with Fusarium graminearum | treatment_replication Fusarium_inoculation_Replication_1 | tissue collection time 48 hours after inoculation
cultivar Premio | cultivar_category CULTIVAR | Fusarium_head_blight_resistance_group susceptible | geo_loc_name France | treatment point inoculation with Fusarium graminearum | treatment_replication Fusarium_inoculation_Replication_1 | tissue collection time 48 hours after inoculation
4 SRP111489 Crown transcriptome analysis of Norstar (NO), Manitou (MA), and the near-isogenic lines (NIL) spring Norstar (SN) and winter Manitou (WM) under field conditions
source_name 2013_NO_t4 | line NO | sampling data 21-Oct-13
5 ERP013829 RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
Illumina HiSeq 2000 paired end sequencing; RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
External Id SAMEA3724152 | INSDC last update 2016-01-11T18:47:09Z | Submitter Id E-MTAB-4222:NIL38_F12_R2 | cultivar NIL38 | infect Fusarium graminearum | sample name E-MTAB-4222:NIL38_F12_R2 | time 12
Illumina HiSeq 2000 paired end sequencing; RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
External Id SAMEA3724203 | INSDC last update 2016-01-11T18:47:10Z | Submitter Id E-MTAB-4222:NIL51_F6_R2 | cultivar NIL51 | infect Fusarium graminearum | sample name E-MTAB-4222:NIL51_F6_R2 | time 6
Illumina HiSeq 2000 paired end sequencing; RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
External Id SAMEA3724216 | INSDC last update 2016-01-11T18:47:11Z | Submitter Id E-MTAB-4222:NIL51_M3_R3 | cultivar NIL51 | infect mock inoculation | sample name E-MTAB-4222:NIL51_M3_R3 | time 3
Illumina HiSeq 2000 paired end sequencing; RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
External Id SAMEA3724188 | INSDC last update 2016-01-11T18:47:10Z | Submitter Id E-MTAB-4222:NIL51_F12_R2 | cultivar NIL51 | infect Fusarium graminearum | sample name E-MTAB-4222:NIL51_F12_R2 | time 12
Illumina HiSeq 2000 paired end sequencing; RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
External Id SAMEA3724171 | INSDC last update 2016-01-11T18:47:09Z | Submitter Id E-MTAB-4222:NIL38_M12_R3 | cultivar NIL38 | infect mock inoculation | sample name E-MTAB-4222:NIL38_M12_R3 | time 12
Illumina HiSeq 2000 paired end sequencing; RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
External Id SAMEA3724189 | INSDC last update 2016-01-11T18:47:10Z | Submitter Id E-MTAB-4222:NIL51_F12_R3 | cultivar NIL51 | infect Fusarium graminearum | sample name E-MTAB-4222:NIL51_F12_R3 | time 12
6 ERP104851 Differential gene expression studies for identifying genes imparting heat stress tolerance in wheat during grain filling.
Illumina HiSeq 4000 paired end sequencing; Differential gene expression studies for identifying genes imparting heat stress tolerance in wheat during grain filling.
External Id SAMEA104356097 | INSDC last update 2017-10-19T16:36:46Z | Submitter Id E-MTAB-6140:VS011 | cultivar Banks | developmental stage beginning of whole plant fruit ripening stage | sample name E-MTAB-6140:VS011
Illumina HiSeq 4000 paired end sequencing; Differential gene expression studies for identifying genes imparting heat stress tolerance in wheat during grain filling.
External Id SAMEA104356109 | INSDC last update 2017-10-19T16:36:46Z | Submitter Id E-MTAB-6140:VS031 | cultivar Fang-60 | developmental stage beginning of whole plant fruit ripening stage | sample name E-MTAB-6140:VS031
Illumina HiSeq 4000 paired end sequencing; Differential gene expression studies for identifying genes imparting heat stress tolerance in wheat during grain filling.
External Id SAMEA104356101 | INSDC last update 2017-10-19T16:36:46Z | Submitter Id E-MTAB-6140:VS132 | cultivar Banks | developmental stage beginning of whole plant fruit ripening stage | sample name E-MTAB-6140:VS132
Illumina HiSeq 4000 paired end sequencing; Differential gene expression studies for identifying genes imparting heat stress tolerance in wheat during grain filling.
External Id SAMEA104356110 | INSDC last update 2017-10-19T16:36:46Z | Submitter Id E-MTAB-6140:VS061 | cultivar Fang-60 | developmental stage beginning of whole plant fruit ripening stage | sample name E-MTAB-6140:VS061
7 SRP141021 MicroRNA-guided regulation of heat stress response in wheat
Illumina Genome Analyzer IIx sequencing; mRNA-Seq for Associative Transcriptomics in hexaploid wheat
ENA first public 2014-01-31 | ENA last update 2018-03-08 | ENA-CHECKLIST ERC000011 | External Id SAMEA2341747 | INSDC center alias TGAC | INSDC center name The Genome Analysis Centre | INSDC first public 2014-01-31T17:00:55Z | INSDC last update 2018-03-08T17:10:36Z | INSDC status public | Submitter Id W043_GLAD | common name bread wheat | sample name W043_GLAD
Illumina Genome Analyzer IIx sequencing; mRNA-Seq for Associative Transcriptomics in hexaploid wheat
ENA first public 2014-01-31 | ENA last update 2018-03-08 | ENA-CHECKLIST ERC000011 | External Id SAMEA2341731 | INSDC center alias TGAC | INSDC center name The Genome Analysis Centre | INSDC first public 2014-01-31T17:00:55Z | INSDC last update 2018-03-08T17:10:29Z | INSDC status public | Submitter Id W011_BAT | common name bread wheat | sample name W011_BAT
genotype NuyBai | treatment water (mock) inoculation
PCA Loading
1 SRP173230 Characterization of QTL and eQTL linked with early Fusarium graminearum infection and deoxynivalenol levels in a Wuhan -1 x Nyubai doubled-haploid wheat population at two days post inoculation
cultivar 260-1-1-2 | dev_stage 12 hours after inoculation | tissue Spikelet | treatment Water inoculated
4 SRP156347 Integrated transcriptome and hormone profiling highlight the role of multiple phytohormone pathways in wheat resistance against fusarium head blight
Illumina Genome Analyzer IIx sequencing; transcriptomic analysis of F. graminearum disease response in near-isogenic resistant and susceptible hexaploid wheat lines
External Id SAMEA104555649 | INSDC last update 2018-01-30T11:47:33Z | Submitter Id E-MTAB-6383:2618_FG_RACH_01 | infect Fusarium graminearum isolate DAOM 180378 | organism part leaf rachis | sample name E-MTAB-6383:2618_FG_RACH_01
Illumina Genome Analyzer IIx sequencing; transcriptomic analysis of F. graminearum disease response in near-isogenic resistant and susceptible hexaploid wheat lines
External Id SAMEA104555652 | INSDC last update 2018-01-30T11:47:33Z | Submitter Id E-MTAB-6383:2618_FG_SP_01 | infect Fusarium graminearum isolate DAOM 180378 | organism part spikelet | sample name E-MTAB-6383:2618_FG_SP_01
Illumina Genome Analyzer IIx sequencing; transcriptomic analysis of F. graminearum disease response in near-isogenic resistant and susceptible hexaploid wheat lines
External Id SAMEA104555650 | INSDC last update 2018-01-30T11:47:33Z | Submitter Id E-MTAB-6383:2618_FG_RACH_02 | infect Fusarium graminearum isolate DAOM 180378 | organism part leaf rachis | sample name E-MTAB-6383:2618_FG_RACH_02
Illumina Genome Analyzer IIx sequencing; transcriptomic analysis of F. graminearum disease response in near-isogenic resistant and susceptible hexaploid wheat lines
External Id SAMEA104555659 | INSDC last update 2018-01-30T11:47:34Z | Submitter Id E-MTAB-6383:2618_H2O_SP_03 | organism part spikelet | sample name E-MTAB-6383:2618_H2O_SP_03
Illumina Genome Analyzer IIx sequencing; transcriptomic analysis of F. graminearum disease response in near-isogenic resistant and susceptible hexaploid wheat lines
External Id SAMEA104555658 | INSDC last update 2018-01-30T11:47:34Z | Submitter Id E-MTAB-6383:2618_H2O_SP_02 | organism part spikelet | sample name E-MTAB-6383:2618_H2O_SP_02
Illumina Genome Analyzer IIx sequencing; transcriptomic analysis of F. graminearum disease response in near-isogenic resistant and susceptible hexaploid wheat lines
External Id SAMEA104555657 | INSDC last update 2018-01-30T11:47:33Z | Submitter Id E-MTAB-6383:2618_H2O_SP_01 | organism part spikelet | sample name E-MTAB-6383:2618_H2O_SP_01
9 ERP013829 RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
Illumina HiSeq 2000 paired end sequencing; RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
External Id SAMEA3724164 | INSDC last update 2016-01-11T18:47:09Z | Submitter Id E-MTAB-4222:NIL38_F48_R2 | cultivar NIL38 | infect Fusarium graminearum | sample name E-MTAB-4222:NIL38_F48_R2 | time 48
Illumina HiSeq 2000 paired end sequencing; RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
External Id SAMEA3724200 | INSDC last update 2016-01-11T18:47:10Z | Submitter Id E-MTAB-4222:NIL51_F48_R2 | cultivar NIL51 | infect Fusarium graminearum | sample name E-MTAB-4222:NIL51_F48_R2 | time 48
Illumina HiSeq 2000 paired end sequencing; RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
External Id SAMEA3724201 | INSDC last update 2016-01-11T18:47:10Z | Submitter Id E-MTAB-4222:NIL51_F48_R3 | cultivar NIL51 | infect Fusarium graminearum | sample name E-MTAB-4222:NIL51_F48_R3 | time 48
Illumina HiSeq 2000 paired end sequencing; RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
External Id SAMEA3724210 | INSDC last update 2016-01-11T18:47:11Z | Submitter Id E-MTAB-4222:NIL51_M24_R3 | cultivar NIL51 | infect mock inoculation | sample name E-MTAB-4222:NIL51_M24_R3 | time 24
Illumina HiSeq 2000 paired end sequencing; RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
External Id SAMEA3724218 | INSDC last update 2016-01-11T18:47:11Z | Submitter Id E-MTAB-4222:NIL51_M48_R2 | cultivar NIL51 | infect mock inoculation | sample name E-MTAB-4222:NIL51_M48_R2 | time 48
Illumina HiSeq 2000 paired end sequencing; RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
External Id SAMEA3724219 | INSDC last update 2016-01-11T18:47:11Z | Submitter Id E-MTAB-4222:NIL51_M48_R3 | cultivar NIL51 | infect mock inoculation | sample name E-MTAB-4222:NIL51_M48_R3 | time 48
10 SRP223022 Transcriptomic and phytohormone profiling reveal early stage molecular variations upon co-application of abscisic or gibberellic acids with Fusarium graminearum-challenge of wheat
Illumina HiSeq 2500 sequencing; RNA-seq of wheat leaves and roots in response to Xanthomonas translucens infection
External Id SAMEA104167304 | Submitter Id E-MTAB-5891:Control_Wheat_Leaves_Replicate2 | organism part leaf | sample name E-MTAB-5891:Control_Wheat_Leaves_Replicate2
Illumina HiSeq 2500 sequencing; RNA-seq of wheat leaves and roots in response to Xanthomonas translucens infection
External Id SAMEA104167303 | Submitter Id E-MTAB-5891:Control_Wheat_Leaves_Replicate1 | organism part leaf | sample name E-MTAB-5891:Control_Wheat_Leaves_Replicate1
Illumina HiSeq 2500 sequencing; RNA-seq of wheat leaves and roots in response to Xanthomonas translucens infection
External Id SAMEA104167305 | Submitter Id E-MTAB-5891:Control_Wheat_Leaves_Replicate3 | organism part leaf | sample name E-MTAB-5891:Control_Wheat_Leaves_Replicate3
Illumina HiSeq 2500 sequencing; RNA-seq of wheat leaves and roots in response to Xanthomonas translucens infection
External Id SAMEA104167312 | Submitter Id E-MTAB-5891:Xt_Wheat_Roots_Replicate1 | organism part root | sample name E-MTAB-5891:Xt_Wheat_Roots_Replicate1
Illumina HiSeq 2500 sequencing; RNA-seq of wheat leaves and roots in response to Xanthomonas translucens infection
External Id SAMEA104167308 | Submitter Id E-MTAB-5891:Control_Wheat_Roots_Replicate3 | organism part root | sample name E-MTAB-5891:Control_Wheat_Roots_Replicate3
Illumina HiSeq 2500 sequencing; RNA-seq of wheat leaves and roots in response to Xanthomonas translucens infection
External Id SAMEA104167314 | Submitter Id E-MTAB-5891:Xt_Wheat_Roots_Replicate3 | organism part root | sample name E-MTAB-5891:Xt_Wheat_Roots_Replicate3
5 SRP115390 Tissue-specific expression and phylogeny of ammonium and nitrate transporter genes in wheat
6 SRP304900 Next-Generation Sequencing Facilitates Quantitative Analysis of Transcriptomes Mechanism for Autophagy Inhibition Enhanced Salt Stress Sensitivity of Wheat Seedling
7 ERP024175 RNAseq of roots and leaves of tender wheat (Triticum aestivum cv chinese Spring) during interactions with mycorhizal fungi (Funneliformis mossae) with and without a pathogen attack by Xanthomonas translucens
Illumina HiSeq 2500 sequencing; RNAseq of roots and leaves of tender wheat (Triticum aestivum cv chinese Spring) during interactions with mycorhizal fungi (Funneliformis mossae) with and without a pathogen attack by Xanthomonas translucens
External Id SAMEA104168704 | INSDC last update 2017-07-20T14:28:29Z | Submitter Id E-MTAB-5898:Wheat+MycorhizalFungi+Xanthomonas_Leaves_Replicate1 | organism part leaf | sample name E-MTAB-5898:Wheat+MycorhizalFungi+Xanthomonas_Leaves_Replicate1
Illumina HiSeq 2500 sequencing; RNAseq of roots and leaves of tender wheat (Triticum aestivum cv chinese Spring) during interactions with mycorhizal fungi (Funneliformis mossae) with and without a pathogen attack by Xanthomonas translucens
External Id SAMEA104168705 | INSDC last update 2017-07-20T14:28:29Z | Submitter Id E-MTAB-5898:Wheat+MycorhizalFungi+Xanthomonas_Leaves_Replicate2 | organism part leaf | sample name E-MTAB-5898:Wheat+MycorhizalFungi+Xanthomonas_Leaves_Replicate2
Illumina HiSeq 2500 sequencing; RNAseq of roots and leaves of tender wheat (Triticum aestivum cv chinese Spring) during interactions with mycorhizal fungi (Funneliformis mossae) with and without a pathogen attack by Xanthomonas translucens
External Id SAMEA104168710 | INSDC last update 2017-07-20T14:28:29Z | Submitter Id E-MTAB-5898:Wheat+MycorhizalFungi_Leaves_Replicate1 | organism part leaf | sample name E-MTAB-5898:Wheat+MycorhizalFungi_Leaves_Replicate1
Illumina HiSeq 2500 sequencing; RNAseq of roots and leaves of tender wheat (Triticum aestivum cv chinese Spring) during interactions with mycorhizal fungi (Funneliformis mossae) with and without a pathogen attack by Xanthomonas translucens
External Id SAMEA104168715 | INSDC last update 2017-07-20T14:28:30Z | Submitter Id E-MTAB-5898:Wheat+MycorhizalFungi_Roots_Replicate3 | organism part root | sample name E-MTAB-5898:Wheat+MycorhizalFungi_Roots_Replicate3
Illumina HiSeq 2500 sequencing; RNAseq of roots and leaves of tender wheat (Triticum aestivum cv chinese Spring) during interactions with mycorhizal fungi (Funneliformis mossae) with and without a pathogen attack by Xanthomonas translucens
External Id SAMEA104168709 | INSDC last update 2017-07-20T14:28:29Z | Submitter Id E-MTAB-5898:Wheat+MycorhizalFungi+Xanthomonas_Roots_Replicate3 | organism part root | sample name E-MTAB-5898:Wheat+MycorhizalFungi+Xanthomonas_Roots_Replicate3
Illumina HiSeq 2500 sequencing; RNAseq of roots and leaves of tender wheat (Triticum aestivum cv chinese Spring) during interactions with mycorhizal fungi (Funneliformis mossae) with and without a pathogen attack by Xanthomonas translucens
External Id SAMEA104168707 | INSDC last update 2017-07-20T14:28:29Z | Submitter Id E-MTAB-5898:Wheat+MycorhizalFungi+Xanthomonas_Roots_Replicate1 | organism part root | sample name E-MTAB-5898:Wheat+MycorhizalFungi+Xanthomonas_Roots_Replicate1
8 SRP293922 Iron Deficiency Triggered Transcriptome Changes in Bread Wheat
9 DRP000768 Characterisation of the wheat (Triticum aestivum L.) transcriptome by de novo assembly for the discovery of phosphate starvation-responsive genes
1 SRP173230 Characterization of QTL and eQTL linked with early Fusarium graminearum infection and deoxynivalenol levels in a Wuhan -1 x Nyubai doubled-haploid wheat population at two days post inoculation
5 SRP223022 Transcriptomic and phytohormone profiling reveal early stage molecular variations upon co-application of abscisic or gibberellic acids with Fusarium graminearum-challenge of wheat
Illumina HiSeq 4000 paired end sequencing; Differential gene expression studies for identifying genes imparting heat stress tolerance in wheat during grain filling.
External Id SAMEA104356102 | INSDC last update 2017-10-19T16:36:46Z | Submitter Id E-MTAB-6140:VS162 | cultivar Banks | developmental stage beginning of whole plant fruit ripening stage | sample name E-MTAB-6140:VS162
Illumina HiSeq 4000 paired end sequencing; Differential gene expression studies for identifying genes imparting heat stress tolerance in wheat during grain filling.
External Id SAMEA104356129 | INSDC last update 2017-10-19T16:36:47Z | Submitter Id E-MTAB-6140:VS263 | cultivar Gregory | developmental stage beginning of whole plant fruit ripening stage | sample name E-MTAB-6140:VS263
Illumina HiSeq 4000 paired end sequencing; Differential gene expression studies for identifying genes imparting heat stress tolerance in wheat during grain filling.
External Id SAMEA104356114 | INSDC last update 2017-10-19T16:36:46Z | Submitter Id E-MTAB-6140:VS182 | cultivar Fang-60 | developmental stage beginning of whole plant fruit ripening stage | sample name E-MTAB-6140:VS182
10 SRP155866 The global wheat gene expressional responses to fusaoctaxin A
2 SRP223022 Transcriptomic and phytohormone profiling reveal early stage molecular variations upon co-application of abscisic or gibberellic acids with Fusarium graminearum-challenge of wheat
Illumina HiSeq 2000 sequencing; ble HiSeq 2000 Simple ou Paire multiplex
External Id SAMEA2342265 | INSDC last update 2018-03-08T17:10:02Z | Submitter Id sample_ATW_4565_m-RNA Graines | sample name sample_ATW_4565_m-RNA Graines
Illumina HiSeq 2000 sequencing; ble HiSeq 2000 Simple ou Paire multiplex
External Id SAMEA2342265 | INSDC last update 2018-03-08T17:10:02Z | Submitter Id sample_ATW_4565_m-RNA Graines | sample name sample_ATW_4565_m-RNA Graines
Illumina HiSeq 2000 sequencing; ble HiSeq 2000 Simple ou Paire multiplex
External Id SAMEA2342265 | INSDC last update 2018-03-08T17:10:02Z | Submitter Id sample_ATW_4565_m-RNA Graines | sample name sample_ATW_4565_m-RNA Graines
Illumina HiSeq 2000 paired end sequencing; ble HiSeq 2000 Simple ou Paire multiplex
External Id SAMEA2342242 | INSDC last update 2018-03-08T17:09:49Z | Submitter Id sample_ATW_4565_MR1 | sample name sample_ATW_4565_MR1
6 SRP173230 Characterization of QTL and eQTL linked with early Fusarium graminearum infection and deoxynivalenol levels in a Wuhan -1 x Nyubai doubled-haploid wheat population at two days post inoculation
Illumina Genome Analyzer IIx sequencing; transcriptomic analysis of F. graminearum disease response in near-isogenic resistant and susceptible hexaploid wheat lines
External Id SAMEA104555666 | INSDC last update 2018-01-30T11:47:34Z | Submitter Id E-MTAB-6383:2890_H2O_SP_02 | cultivar 2890 | organism part spikelet | phenotype susceptible to Fusarium head blight | sample name E-MTAB-6383:2890_H2O_SP_02
Illumina Genome Analyzer IIx sequencing; transcriptomic analysis of F. graminearum disease response in near-isogenic resistant and susceptible hexaploid wheat lines
External Id SAMEA104555665 | INSDC last update 2018-01-30T11:47:34Z | Submitter Id E-MTAB-6383:2890_H2O_SP_01 | cultivar 2890 | organism part spikelet | phenotype susceptible to Fusarium head blight | sample name E-MTAB-6383:2890_H2O_SP_01
Illumina Genome Analyzer IIx sequencing; transcriptomic analysis of F. graminearum disease response in near-isogenic resistant and susceptible hexaploid wheat lines
External Id SAMEA104555652 | INSDC last update 2018-01-30T11:47:33Z | Submitter Id E-MTAB-6383:2618_FG_SP_01 | cultivar 2618 | infect Fusarium graminearum isolate DAOM 180378 | organism part spikelet | phenotype resistant to Fusarium head blight | sample name E-MTAB-6383:2618_FG_SP_01
Illumina Genome Analyzer IIx sequencing; transcriptomic analysis of F. graminearum disease response in near-isogenic resistant and susceptible hexaploid wheat lines
External Id SAMEA104555668 | INSDC last update 2018-01-30T11:47:34Z | Submitter Id E-MTAB-6383:2890_H2O_RACH_01 | cultivar 2890 | organism part leaf rachis | phenotype susceptible to Fusarium head blight | sample name E-MTAB-6383:2890_H2O_RACH_01
Illumina Genome Analyzer IIx sequencing; transcriptomic analysis of F. graminearum disease response in near-isogenic resistant and susceptible hexaploid wheat lines
External Id SAMEA104555669 | INSDC last update 2018-01-30T11:47:34Z | Submitter Id E-MTAB-6383:2890_H2O_RACH_02 | cultivar 2890 | organism part leaf rachis | phenotype susceptible to Fusarium head blight | sample name E-MTAB-6383:2890_H2O_RACH_02
Illumina Genome Analyzer IIx sequencing; transcriptomic analysis of F. graminearum disease response in near-isogenic resistant and susceptible hexaploid wheat lines
External Id SAMEA104555655 | INSDC last update 2018-01-30T11:47:33Z | Submitter Id E-MTAB-6383:2618_H2O_RACH_01 | cultivar 2618 | organism part leaf rachis | phenotype resistant to Fusarium head blight | sample name E-MTAB-6383:2618_H2O_RACH_01
9 ERP118497 Effect of heat stress on developing wheat grain
Illumina HiSeq 2500 paired end sequencing; Effect of heat stress on developing wheat grain
External Id SAMEA6235358 | Submitter Id E-MTAB-8520:Sample 6 | age 10 days post anthesis | environmental stress warm/hot temperature regimen | sample name E-MTAB-8520:Sample 6
Illumina HiSeq 2500 paired end sequencing; Effect of heat stress on developing wheat grain
External Id SAMEA6235368 | Submitter Id E-MTAB-8520:Sample 2 | age 6 days post anthesis | environmental stress control | sample name E-MTAB-8520:Sample 2
Illumina HiSeq 2500 paired end sequencing; Effect of heat stress on developing wheat grain
External Id SAMEA6235367 | Submitter Id E-MTAB-8520:Sample 1 | age 6 days post anthesis | environmental stress control | sample name E-MTAB-8520:Sample 1
Illumina HiSeq 2500 paired end sequencing; Effect of heat stress on developing wheat grain
External Id SAMEA6235366 | Submitter Id E-MTAB-8520:Sample 14 | age 14 days post anthesis | environmental stress warm/hot temperature regimen | sample name E-MTAB-8520:Sample 14
Illumina HiSeq 2500 paired end sequencing; Effect of heat stress on developing wheat grain
External Id SAMEA6235364 | Submitter Id E-MTAB-8520:Sample 12 | age 14 days post anthesis | environmental stress warm/hot temperature regimen | sample name E-MTAB-8520:Sample 12
Illumina HiSeq 2500 paired end sequencing; Effect of heat stress on developing wheat grain
External Id SAMEA6235363 | Submitter Id E-MTAB-8520:Sample 9 | age 14 days post anthesis | environmental stress control | sample name E-MTAB-8520:Sample 9
10 ERP013829 RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
Illumina HiSeq 2000 paired end sequencing; RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
External Id SAMEA3724181 | INSDC last update 2016-01-11T18:47:10Z | Submitter Id E-MTAB-4222:NIL38_M48_R1 | cultivar NIL38 | infect mock inoculation | sample name E-MTAB-4222:NIL38_M48_R1 | time 48
Illumina HiSeq 2000 paired end sequencing; RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
External Id SAMEA3724200 | INSDC last update 2016-01-11T18:47:10Z | Submitter Id E-MTAB-4222:NIL51_F48_R2 | cultivar NIL51 | infect Fusarium graminearum | sample name E-MTAB-4222:NIL51_F48_R2 | time 48
Illumina HiSeq 2000 paired end sequencing; RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
External Id SAMEA3724217 | INSDC last update 2016-01-11T18:47:11Z | Submitter Id E-MTAB-4222:NIL51_M48_R1 | cultivar NIL51 | infect mock inoculation | sample name E-MTAB-4222:NIL51_M48_R1 | time 48
Illumina HiSeq 2000 paired end sequencing; RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
External Id SAMEA3724215 | INSDC last update 2016-01-11T18:47:11Z | Submitter Id E-MTAB-4222:NIL51_M3_R2 | cultivar NIL51 | infect mock inoculation | sample name E-MTAB-4222:NIL51_M3_R2 | time 3
Illumina HiSeq 2000 paired end sequencing; RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
External Id SAMEA3724197 | INSDC last update 2016-01-11T18:47:10Z | Submitter Id E-MTAB-4222:NIL51_F3_R2 | cultivar NIL51 | infect Fusarium graminearum | sample name E-MTAB-4222:NIL51_F3_R2 | time 3
Illumina HiSeq 2000 paired end sequencing; RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
External Id SAMEA3724214 | INSDC last update 2016-01-11T18:47:11Z | Submitter Id E-MTAB-4222:NIL51_M3_R1 | cultivar NIL51 | infect mock inoculation | sample name E-MTAB-4222:NIL51_M3_R1 | time 3
PCA Loading
1 SRP223022 Transcriptomic and phytohormone profiling reveal early stage molecular variations upon co-application of abscisic or gibberellic acids with Fusarium graminearum-challenge of wheat
Illumina HiSeq 2000 paired end sequencing; ble HiSeq 2000 Simple ou Paire multiplex
External Id SAMEA2342263 | INSDC last update 2018-03-08T17:10:02Z | Submitter Id sample_ATW_4565_G700G1 - grain | sample name sample_ATW_4565_G700G1 - grain
4 SRP246168 Transcriptomic and anatomic profiling reveal germination process of different wheat varieties in response to waterlogging stress
5 SRP111489 Crown transcriptome analysis of Norstar (NO), Manitou (MA), and the near-isogenic lines (NIL) spring Norstar (SN) and winter Manitou (WM) under field conditions
Illumina HiSeq 4000 paired end sequencing; Differential gene expression studies for identifying genes imparting heat stress tolerance in wheat during grain filling.
External Id SAMEA104356117 | INSDC last update 2017-10-19T16:36:46Z | Submitter Id E-MTAB-6140:VS273 | cultivar Fang-60 | developmental stage beginning of whole plant fruit ripening stage | sample name E-MTAB-6140:VS273
Illumina HiSeq 4000 paired end sequencing; Differential gene expression studies for identifying genes imparting heat stress tolerance in wheat during grain filling.
External Id SAMEA104356097 | INSDC last update 2017-10-19T16:36:46Z | Submitter Id E-MTAB-6140:VS011 | cultivar Banks | developmental stage beginning of whole plant fruit ripening stage | sample name E-MTAB-6140:VS011
Illumina HiSeq 4000 paired end sequencing; Differential gene expression studies for identifying genes imparting heat stress tolerance in wheat during grain filling.
External Id SAMEA104356113 | INSDC last update 2017-10-19T16:36:46Z | Submitter Id E-MTAB-6140:VS152 | cultivar Fang-60 | developmental stage beginning of whole plant fruit ripening stage | sample name E-MTAB-6140:VS152
Illumina HiSeq 4000 paired end sequencing; Differential gene expression studies for identifying genes imparting heat stress tolerance in wheat during grain filling.
External Id SAMEA104356124 | INSDC last update 2017-10-19T16:36:47Z | Submitter Id E-MTAB-6140:VS111 | cultivar Gregory | developmental stage mid whole plant fruit ripening stage | sample name E-MTAB-6140:VS111
10 ERP013829 RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
Illumina HiSeq 2000 paired end sequencing; RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
External Id SAMEA3724193 | INSDC last update 2016-01-11T18:47:10Z | Submitter Id E-MTAB-4222:NIL51_F36_R1 | cultivar NIL51 | infect Fusarium graminearum | sample name E-MTAB-4222:NIL51_F36_R1 | time 36
Illumina HiSeq 2000 paired end sequencing; RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
External Id SAMEA3724157 | INSDC last update 2016-01-11T18:47:09Z | Submitter Id E-MTAB-4222:NIL38_F36_R1 | cultivar NIL38 | infect Fusarium graminearum | sample name E-MTAB-4222:NIL38_F36_R1 | time 36
Illumina HiSeq 2000 paired end sequencing; RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
External Id SAMEA3724158 | INSDC last update 2016-01-11T18:47:09Z | Submitter Id E-MTAB-4222:NIL38_F36_R2 | cultivar NIL38 | infect Fusarium graminearum | sample name E-MTAB-4222:NIL38_F36_R2 | time 36
Illumina HiSeq 2000 paired end sequencing; RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
External Id SAMEA3724206 | INSDC last update 2016-01-11T18:47:10Z | Submitter Id E-MTAB-4222:NIL51_M12_R2 | cultivar NIL51 | infect mock inoculation | sample name E-MTAB-4222:NIL51_M12_R2 | time 12
Illumina HiSeq 2000 paired end sequencing; RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
External Id SAMEA3724202 | INSDC last update 2016-01-11T18:47:10Z | Submitter Id E-MTAB-4222:NIL51_F6_R1 | cultivar NIL51 | infect Fusarium graminearum | sample name E-MTAB-4222:NIL51_F6_R1 | time 6
Illumina HiSeq 2000 paired end sequencing; RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
External Id SAMEA3724205 | INSDC last update 2016-01-11T18:47:10Z | Submitter Id E-MTAB-4222:NIL51_M12_R1 | cultivar NIL51 | infect mock inoculation | sample name E-MTAB-4222:NIL51_M12_R1 | time 12
PCA Loading
1 ERP004714 Whole transcriptome sequencing of wheat 3B chromosome
Illumina Genome Analyzer IIx sequencing; mRNA-Seq for Associative Transcriptomics in hexaploid wheat
ENA first public 2014-01-31 | ENA last update 2018-03-08 | ENA-CHECKLIST ERC000011 | External Id SAMEA2341731 | INSDC center alias TGAC | INSDC center name The Genome Analysis Centre | INSDC first public 2014-01-31T17:00:55Z | INSDC last update 2018-03-08T17:10:29Z | INSDC status public | Submitter Id W011_BAT | common name bread wheat | sample name W011_BAT
Illumina Genome Analyzer IIx sequencing; mRNA-Seq for Associative Transcriptomics in hexaploid wheat
ENA first public 2014-01-31 | ENA last update 2018-03-08 | ENA-CHECKLIST ERC000011 | External Id SAMEA2341725 | INSDC center alias TGAC | INSDC center name The Genome Analysis Centre | INSDC first public 2014-01-31T17:00:55Z | INSDC last update 2018-03-08T17:10:21Z | INSDC status public | Submitter Id W003_ALB | common name bread wheat | sample name W003_ALB
Illumina Genome Analyzer IIx sequencing; mRNA-Seq for Associative Transcriptomics in hexaploid wheat
ENA first public 2014-01-31 | ENA last update 2018-03-08 | ENA-CHECKLIST ERC000011 | External Id SAMEA2341750 | INSDC center alias TGAC | INSDC center name The Genome Analysis Centre | INSDC first public 2014-01-31T17:00:55Z | INSDC last update 2018-03-08T17:10:36Z | INSDC status public | Submitter Id W050_HUM | common name bread wheat | sample name W050_HUM
5 DRP000768 Characterisation of the wheat (Triticum aestivum L.) transcriptome by de novo assembly for the discovery of phosphate starvation-responsive genes
Illumina Genome Analyzer IIx sequencing; transcriptomic analysis of F. graminearum disease response in near-isogenic resistant and susceptible hexaploid wheat lines
External Id SAMEA104555654 | INSDC last update 2018-01-30T11:47:33Z | Submitter Id E-MTAB-6383:2618_FG_SP_03 | cultivar 2618 | infect Fusarium graminearum isolate DAOM 180378 | organism part spikelet | phenotype resistant to Fusarium head blight | sample name E-MTAB-6383:2618_FG_SP_03
Illumina Genome Analyzer IIx sequencing; transcriptomic analysis of F. graminearum disease response in near-isogenic resistant and susceptible hexaploid wheat lines
External Id SAMEA104555652 | INSDC last update 2018-01-30T11:47:33Z | Submitter Id E-MTAB-6383:2618_FG_SP_01 | cultivar 2618 | infect Fusarium graminearum isolate DAOM 180378 | organism part spikelet | phenotype resistant to Fusarium head blight | sample name E-MTAB-6383:2618_FG_SP_01
Illumina Genome Analyzer IIx sequencing; transcriptomic analysis of F. graminearum disease response in near-isogenic resistant and susceptible hexaploid wheat lines
External Id SAMEA104555653 | INSDC last update 2018-01-30T11:47:33Z | Submitter Id E-MTAB-6383:2618_FG_SP_02 | cultivar 2618 | infect Fusarium graminearum isolate DAOM 180378 | organism part spikelet | phenotype resistant to Fusarium head blight | sample name E-MTAB-6383:2618_FG_SP_02
Illumina Genome Analyzer IIx sequencing; transcriptomic analysis of F. graminearum disease response in near-isogenic resistant and susceptible hexaploid wheat lines
External Id SAMEA104555669 | INSDC last update 2018-01-30T11:47:34Z | Submitter Id E-MTAB-6383:2890_H2O_RACH_02 | cultivar 2890 | organism part leaf rachis | phenotype susceptible to Fusarium head blight | sample name E-MTAB-6383:2890_H2O_RACH_02
Illumina Genome Analyzer IIx sequencing; transcriptomic analysis of F. graminearum disease response in near-isogenic resistant and susceptible hexaploid wheat lines
External Id SAMEA104555668 | INSDC last update 2018-01-30T11:47:34Z | Submitter Id E-MTAB-6383:2890_H2O_RACH_01 | cultivar 2890 | organism part leaf rachis | phenotype susceptible to Fusarium head blight | sample name E-MTAB-6383:2890_H2O_RACH_01
Illumina Genome Analyzer IIx sequencing; transcriptomic analysis of F. graminearum disease response in near-isogenic resistant and susceptible hexaploid wheat lines
External Id SAMEA104555670 | INSDC last update 2018-01-30T11:47:34Z | Submitter Id E-MTAB-6383:2890_H2O_RACH_03 | cultivar 2890 | organism part leaf rachis | phenotype susceptible to Fusarium head blight | sample name E-MTAB-6383:2890_H2O_RACH_03
7 SRP304900 Next-Generation Sequencing Facilitates Quantitative Analysis of Transcriptomes Mechanism for Autophagy Inhibition Enhanced Salt Stress Sensitivity of Wheat Seedling
9 ERP024175 RNAseq of roots and leaves of tender wheat (Triticum aestivum cv chinese Spring) during interactions with mycorhizal fungi (Funneliformis mossae) with and without a pathogen attack by Xanthomonas translucens
Illumina HiSeq 2500 sequencing; RNAseq of roots and leaves of tender wheat (Triticum aestivum cv chinese Spring) during interactions with mycorhizal fungi (Funneliformis mossae) with and without a pathogen attack by Xanthomonas translucens
External Id SAMEA104168711 | INSDC last update 2017-07-20T14:28:29Z | Submitter Id E-MTAB-5898:Wheat+MycorhizalFungi_Leaves_Replicate2 | organism part leaf | sample name E-MTAB-5898:Wheat+MycorhizalFungi_Leaves_Replicate2
Illumina HiSeq 2500 sequencing; RNAseq of roots and leaves of tender wheat (Triticum aestivum cv chinese Spring) during interactions with mycorhizal fungi (Funneliformis mossae) with and without a pathogen attack by Xanthomonas translucens
External Id SAMEA104168710 | INSDC last update 2017-07-20T14:28:29Z | Submitter Id E-MTAB-5898:Wheat+MycorhizalFungi_Leaves_Replicate1 | organism part leaf | sample name E-MTAB-5898:Wheat+MycorhizalFungi_Leaves_Replicate1
Illumina HiSeq 2500 sequencing; RNAseq of roots and leaves of tender wheat (Triticum aestivum cv chinese Spring) during interactions with mycorhizal fungi (Funneliformis mossae) with and without a pathogen attack by Xanthomonas translucens
External Id SAMEA104168712 | INSDC last update 2017-07-20T14:28:29Z | Submitter Id E-MTAB-5898:Wheat+MycorhizalFungi_Leaves_Replicate3 | organism part leaf | sample name E-MTAB-5898:Wheat+MycorhizalFungi_Leaves_Replicate3
Illumina HiSeq 2500 sequencing; RNAseq of roots and leaves of tender wheat (Triticum aestivum cv chinese Spring) during interactions with mycorhizal fungi (Funneliformis mossae) with and without a pathogen attack by Xanthomonas translucens
External Id SAMEA104168709 | INSDC last update 2017-07-20T14:28:29Z | Submitter Id E-MTAB-5898:Wheat+MycorhizalFungi+Xanthomonas_Roots_Replicate3 | organism part root | sample name E-MTAB-5898:Wheat+MycorhizalFungi+Xanthomonas_Roots_Replicate3
Illumina HiSeq 2500 sequencing; RNAseq of roots and leaves of tender wheat (Triticum aestivum cv chinese Spring) during interactions with mycorhizal fungi (Funneliformis mossae) with and without a pathogen attack by Xanthomonas translucens
External Id SAMEA104168715 | INSDC last update 2017-07-20T14:28:30Z | Submitter Id E-MTAB-5898:Wheat+MycorhizalFungi_Roots_Replicate3 | organism part root | sample name E-MTAB-5898:Wheat+MycorhizalFungi_Roots_Replicate3
Illumina HiSeq 2500 sequencing; RNAseq of roots and leaves of tender wheat (Triticum aestivum cv chinese Spring) during interactions with mycorhizal fungi (Funneliformis mossae) with and without a pathogen attack by Xanthomonas translucens
External Id SAMEA104168708 | INSDC last update 2017-07-20T14:28:29Z | Submitter Id E-MTAB-5898:Wheat+MycorhizalFungi+Xanthomonas_Roots_Replicate2 | organism part root | sample name E-MTAB-5898:Wheat+MycorhizalFungi+Xanthomonas_Roots_Replicate2
10 SRP156347 Integrated transcriptome and hormone profiling highlight the role of multiple phytohormone pathways in wheat resistance against fusarium head blight
cultivar 260-1-1-2 | dev_stage 12 hours after inoculation | tissue Spikelet | treatment DON inoculated
2 SRP156347 Integrated transcriptome and hormone profiling highlight the role of multiple phytohormone pathways in wheat resistance against fusarium head blight
Illumina HiSeq 2000 sequencing; mRNA-Seq for Associative Transcriptomics in hexaploid wheat
ENA first public 2014-01-31 | ENA last update 2018-03-08 | ENA-CHECKLIST ERC000011 | External Id SAMEA2341790 | INSDC center alias TGAC | INSDC center name The Genome Analysis Centre | INSDC first public 2014-01-31T17:00:55Z | INSDC last update 2018-03-08T17:10:46Z | INSDC status public | Submitter Id W1_Acc | common name bread wheat | sample name W1_Acc
Illumina HiSeq 2000 sequencing; mRNA-Seq for Associative Transcriptomics in hexaploid wheat
ENA first public 2014-01-31 | ENA last update 2018-03-08 | ENA-CHECKLIST ERC000011 | External Id SAMEA2341804 | INSDC center alias TGAC | INSDC center name The Genome Analysis Centre | INSDC first public 2014-01-31T17:00:55Z | INSDC last update 2018-03-08T17:10:46Z | INSDC status public | Submitter Id W55_Ist | common name bread wheat | sample name W55_Ist
Illumina Genome Analyzer IIx sequencing; mRNA-Seq for Associative Transcriptomics in hexaploid wheat
ENA first public 2014-01-31 | ENA last update 2018-03-08 | ENA-CHECKLIST ERC000011 | External Id SAMEA2341731 | INSDC center alias TGAC | INSDC center name The Genome Analysis Centre | INSDC first public 2014-01-31T17:00:55Z | INSDC last update 2018-03-08T17:10:29Z | INSDC status public | Submitter Id W011_BAT | common name bread wheat | sample name W011_BAT
4 ERP013829 RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
Illumina HiSeq 2000 paired end sequencing; RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
External Id SAMEA3724181 | INSDC last update 2016-01-11T18:47:10Z | Submitter Id E-MTAB-4222:NIL38_M48_R1 | cultivar NIL38 | infect mock inoculation | sample name E-MTAB-4222:NIL38_M48_R1 | time 48
Illumina HiSeq 2000 paired end sequencing; RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
External Id SAMEA3724183 | INSDC last update 2016-01-11T18:47:10Z | Submitter Id E-MTAB-4222:NIL38_M48_R3 | cultivar NIL38 | infect mock inoculation | sample name E-MTAB-4222:NIL38_M48_R3 | time 48
Illumina HiSeq 2000 paired end sequencing; RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
External Id SAMEA3724219 | INSDC last update 2016-01-11T18:47:11Z | Submitter Id E-MTAB-4222:NIL51_M48_R3 | cultivar NIL51 | infect mock inoculation | sample name E-MTAB-4222:NIL51_M48_R3 | time 48
Illumina HiSeq 2000 paired end sequencing; RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
External Id SAMEA3724204 | INSDC last update 2016-01-11T18:47:10Z | Submitter Id E-MTAB-4222:NIL51_F6_R3 | cultivar NIL51 | infect Fusarium graminearum | sample name E-MTAB-4222:NIL51_F6_R3 | time 6
Illumina HiSeq 2000 paired end sequencing; RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
External Id SAMEA3724188 | INSDC last update 2016-01-11T18:47:10Z | Submitter Id E-MTAB-4222:NIL51_F12_R2 | cultivar NIL51 | infect Fusarium graminearum | sample name E-MTAB-4222:NIL51_F12_R2 | time 12
Illumina HiSeq 2000 paired end sequencing; RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
External Id SAMEA3724186 | INSDC last update 2016-01-11T18:47:10Z | Submitter Id E-MTAB-4222:NIL38_M6_R3 | cultivar NIL38 | infect mock inoculation | sample name E-MTAB-4222:NIL38_M6_R3 | time 6
5 SRP321728 Triticum aestivum Transcriptome or Gene expression
Illumina Genome Analyzer IIx sequencing; transcriptomic analysis of F. graminearum disease response in near-isogenic resistant and susceptible hexaploid wheat lines
External Id SAMEA104555656 | INSDC last update 2018-01-30T11:47:33Z | Submitter Id E-MTAB-6383:2618_H2O_RACH_03 | cultivar 2618 | organism part leaf rachis | phenotype resistant to Fusarium head blight | sample name E-MTAB-6383:2618_H2O_RACH_03
Illumina Genome Analyzer IIx sequencing; transcriptomic analysis of F. graminearum disease response in near-isogenic resistant and susceptible hexaploid wheat lines
External Id SAMEA104555655 | INSDC last update 2018-01-30T11:47:33Z | Submitter Id E-MTAB-6383:2618_H2O_RACH_01 | cultivar 2618 | organism part leaf rachis | phenotype resistant to Fusarium head blight | sample name E-MTAB-6383:2618_H2O_RACH_01
Illumina Genome Analyzer IIx sequencing; transcriptomic analysis of F. graminearum disease response in near-isogenic resistant and susceptible hexaploid wheat lines
External Id SAMEA104555668 | INSDC last update 2018-01-30T11:47:34Z | Submitter Id E-MTAB-6383:2890_H2O_RACH_01 | cultivar 2890 | organism part leaf rachis | phenotype susceptible to Fusarium head blight | sample name E-MTAB-6383:2890_H2O_RACH_01
Illumina Genome Analyzer IIx sequencing; transcriptomic analysis of F. graminearum disease response in near-isogenic resistant and susceptible hexaploid wheat lines
External Id SAMEA104555654 | INSDC last update 2018-01-30T11:47:33Z | Submitter Id E-MTAB-6383:2618_FG_SP_03 | cultivar 2618 | infect Fusarium graminearum isolate DAOM 180378 | organism part spikelet | phenotype resistant to Fusarium head blight | sample name E-MTAB-6383:2618_FG_SP_03
Illumina Genome Analyzer IIx sequencing; transcriptomic analysis of F. graminearum disease response in near-isogenic resistant and susceptible hexaploid wheat lines
External Id SAMEA104555665 | INSDC last update 2018-01-30T11:47:34Z | Submitter Id E-MTAB-6383:2890_H2O_SP_01 | cultivar 2890 | organism part spikelet | phenotype susceptible to Fusarium head blight | sample name E-MTAB-6383:2890_H2O_SP_01
Illumina Genome Analyzer IIx sequencing; transcriptomic analysis of F. graminearum disease response in near-isogenic resistant and susceptible hexaploid wheat lines
External Id SAMEA104555653 | INSDC last update 2018-01-30T11:47:33Z | Submitter Id E-MTAB-6383:2618_FG_SP_02 | cultivar 2618 | infect Fusarium graminearum isolate DAOM 180378 | organism part spikelet | phenotype resistant to Fusarium head blight | sample name E-MTAB-6383:2618_FG_SP_02
8 SRP015990 Triticum aestivum strain:Kukri, Excalibur, Jagger, Chinese Spring, RAC875, Bobwhite, CAP7, CAP8, CAP11, CAP12 Transcriptome or Gene expression
source_name 4_DAT_heat_leaf | exposed to 37°C heat stress for 5 days | time point 4 day after treatment (DAT)
10 SRP173230 Characterization of QTL and eQTL linked with early Fusarium graminearum infection and deoxynivalenol levels in a Wuhan -1 x Nyubai doubled-haploid wheat population at two days post inoculation
1 SRP111489 Crown transcriptome analysis of Norstar (NO), Manitou (MA), and the near-isogenic lines (NIL) spring Norstar (SN) and winter Manitou (WM) under field conditions
4 SRP157692 Insights into transcriptional characteristics and homoeolog expression bias of embryo and endosperm in developing grain through mRNA-Seq and Iso-Seq
strain kenong9204 | phenotype K-deficiency tolerant | treatment normal potassium
10 SRP156347 Integrated transcriptome and hormone profiling highlight the role of multiple phytohormone pathways in wheat resistance against fusarium head blight
1 SRP111489 Crown transcriptome analysis of Norstar (NO), Manitou (MA), and the near-isogenic lines (NIL) spring Norstar (SN) and winter Manitou (WM) under field conditions
source_name 2013_WM_t2 | line WM | sampling data 7-Oct-13
2 ERP013829 RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
Illumina HiSeq 2000 paired end sequencing; RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
External Id SAMEA3724213 | INSDC last update 2016-01-11T18:47:11Z | Submitter Id E-MTAB-4222:NIL51_M36_R3 | cultivar NIL51 | infect mock inoculation | sample name E-MTAB-4222:NIL51_M36_R3 | time 36
Illumina HiSeq 2000 paired end sequencing; RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
External Id SAMEA3724175 | INSDC last update 2016-01-11T18:47:10Z | Submitter Id E-MTAB-4222:NIL38_M36_R1 | cultivar NIL38 | infect mock inoculation | sample name E-MTAB-4222:NIL38_M36_R1 | time 36
Illumina HiSeq 2000 paired end sequencing; RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
External Id SAMEA3724183 | INSDC last update 2016-01-11T18:47:10Z | Submitter Id E-MTAB-4222:NIL38_M48_R3 | cultivar NIL38 | infect mock inoculation | sample name E-MTAB-4222:NIL38_M48_R3 | time 48
Illumina HiSeq 2000 paired end sequencing; RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
External Id SAMEA3724185 | INSDC last update 2016-01-11T18:47:10Z | Submitter Id E-MTAB-4222:NIL38_M6_R2 | cultivar NIL38 | infect mock inoculation | sample name E-MTAB-4222:NIL38_M6_R2 | time 6
Illumina HiSeq 2000 paired end sequencing; RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
External Id SAMEA3724167 | INSDC last update 2016-01-11T18:47:09Z | Submitter Id E-MTAB-4222:NIL38_F6_R2 | cultivar NIL38 | infect Fusarium graminearum | sample name E-MTAB-4222:NIL38_F6_R2 | time 6
Illumina HiSeq 2000 paired end sequencing; RNA-seq of coding RNA of wheat heads from 3, 6, 12, 24, 36, and 48 hours after inoculation of fungal pathogen Fusarium graminearum or mock inoculation
External Id SAMEA3724202 | INSDC last update 2016-01-11T18:47:10Z | Submitter Id E-MTAB-4222:NIL51_F6_R1 | cultivar NIL51 | infect Fusarium graminearum | sample name E-MTAB-4222:NIL51_F6_R1 | time 6
3 ERP116792 RNAseq from endosperm and pericarp of 3 wheat genotypes: Cadenza, triple stack of TaiRX9b knock-out alleles, null segregant control
Illumina HiSeq 4000 paired end sequencing; RNAseq from endosperm and pericarp of 3 wheat genotypes: Cadenza, triple stack of TaiRX9b knock-out alleles, null segregant control
External Id SAMEA5860525 | Submitter Id E-MTAB-8237:Sample 17 | genotype wild type genotype | organism part pericarp | sample name E-MTAB-8237:Sample 17
Illumina HiSeq 4000 paired end sequencing; RNAseq from endosperm and pericarp of 3 wheat genotypes: Cadenza, triple stack of TaiRX9b knock-out alleles, null segregant control
External Id SAMEA5860532 | Submitter Id E-MTAB-8237:Sample 16 | genotype null segregant control | organism part pericarp | sample name E-MTAB-8237:Sample 16
Illumina HiSeq 4000 paired end sequencing; RNAseq from endosperm and pericarp of 3 wheat genotypes: Cadenza, triple stack of TaiRX9b knock-out alleles, null segregant control
External Id SAMEA5860530 | Submitter Id E-MTAB-8237:Sample 10 | genotype null segregant control | organism part pericarp | sample name E-MTAB-8237:Sample 10
Illumina HiSeq 4000 paired end sequencing; RNAseq from endosperm and pericarp of 3 wheat genotypes: Cadenza, triple stack of TaiRX9b knock-out alleles, null segregant control
External Id SAMEA5860529 | Submitter Id E-MTAB-8237:Sample 1 | genotype null segregant control | organism part endosperm | sample name E-MTAB-8237:Sample 1
Illumina HiSeq 4000 paired end sequencing; RNAseq from endosperm and pericarp of 3 wheat genotypes: Cadenza, triple stack of TaiRX9b knock-out alleles, null segregant control
External Id SAMEA5860533 | Submitter Id E-MTAB-8237:Sample 4 | genotype null segregant control | organism part endosperm | sample name E-MTAB-8237:Sample 4
Illumina HiSeq 4000 paired end sequencing; RNAseq from endosperm and pericarp of 3 wheat genotypes: Cadenza, triple stack of TaiRX9b knock-out alleles, null segregant control
External Id SAMEA5860529 | Submitter Id E-MTAB-8237:Sample 1 | genotype null segregant control | organism part endosperm | sample name E-MTAB-8237:Sample 1
4 SRP321728 Triticum aestivum Transcriptome or Gene expression
Illumina HiSeq 2500 paired end sequencing; Effect of heat stress on developing wheat grain
External Id SAMEA6235363 | Submitter Id E-MTAB-8520:Sample 9 | age 14 days post anthesis | environmental stress control | sample name E-MTAB-8520:Sample 9
Illumina HiSeq 2500 paired end sequencing; Effect of heat stress on developing wheat grain
External Id SAMEA6235361 | Submitter Id E-MTAB-8520:Sample 10 | age 14 days post anthesis | environmental stress control | sample name E-MTAB-8520:Sample 10
Illumina HiSeq 2500 paired end sequencing; Effect of heat stress on developing wheat grain
External Id SAMEA6235364 | Submitter Id E-MTAB-8520:Sample 12 | age 14 days post anthesis | environmental stress warm/hot temperature regimen | sample name E-MTAB-8520:Sample 12
Illumina HiSeq 2500 paired end sequencing; Effect of heat stress on developing wheat grain
External Id SAMEA6235359 | Submitter Id E-MTAB-8520:Sample 7 | age 10 days post anthesis | environmental stress warm/hot temperature regimen | sample name E-MTAB-8520:Sample 7
Illumina HiSeq 2500 paired end sequencing; Effect of heat stress on developing wheat grain
External Id SAMEA6235368 | Submitter Id E-MTAB-8520:Sample 2 | age 6 days post anthesis | environmental stress control | sample name E-MTAB-8520:Sample 2
Illumina HiSeq 2500 paired end sequencing; Effect of heat stress on developing wheat grain
External Id SAMEA6235358 | Submitter Id E-MTAB-8520:Sample 6 | age 10 days post anthesis | environmental stress warm/hot temperature regimen | sample name E-MTAB-8520:Sample 6
7 SRP156347 Integrated transcriptome and hormone profiling highlight the role of multiple phytohormone pathways in wheat resistance against fusarium head blight
9 SRP173230 Characterization of QTL and eQTL linked with early Fusarium graminearum infection and deoxynivalenol levels in a Wuhan -1 x Nyubai doubled-haploid wheat population at two days post inoculation