Coexpression PCA detail

osa 

Platform: osa-r.c5-0

PC1	PC2	PC3	PC4	PC5	PC6	PC7	PC8	PC9	PC10
DownloadCoexMap	DownloadCoexMap	DownloadCoexMap	DownloadCoexMap	DownloadCoexMap	DownloadCoexMap	DownloadCoexMap	DownloadCoexMap	DownloadCoexMap	DownloadCoexMap
Loading 1 SRP056884 Host transcriptional reprogramming across diverse strains of the rice bacterial leaf streak pathogen Xanthomonas oryzae pv.oryzicola loading run annotation attributes 2.1474 SRR1952779 source_name 48 hrs after inoculation with BLS256 2.1233 SRR1952798 source_name 48 hrs after inoculation with BXOR1 1.7058 SRR1952785 source_name 48 hrs after inoculation with CFBP2286 -2.2988 SRR1952789 source_name 48 hrs after inoculation with B8-12 -2.5578 SRR1952801 source_name 48 hrs after inoculation with CFBP7331 -2.6413 SRR1952788 source_name 48 hrs after inoculation with B8-12 2 ERP013234 Rice perception of symbiotic arbuscular mychorrhizal fungi requires the karrikin receptor complex loading run annotation attributes 2.037 ERR1142042 Illumina HiSeq 2000 paired end sequencing; Rice perception of symbiotic arbuscular mychorrhizal fungi requires the karrikin receptor complex External Id SAMEA3670717 | Submitter Id E-MTAB-4072:hebibaAOC + GSE Time 06 hpt | genotype mutant | sample name E-MTAB-4072:hebibaAOC + GSE Time 06 hpt 1.4763 ERR1142046 Illumina HiSeq 2000 paired end sequencing; Rice perception of symbiotic arbuscular mychorrhizal fungi requires the karrikin receptor complex External Id SAMEA3670721 | Submitter Id E-MTAB-4072:hebibaAOC Mock Time 00 hpt | genotype mutant | sample name E-MTAB-4072:hebibaAOC Mock Time 00 hpt 1.2048 ERR1142067 Illumina HiSeq 2000 paired end sequencing; Rice perception of symbiotic arbuscular mychorrhizal fungi requires the karrikin receptor complex External Id SAMEA3670742 | Submitter Id E-MTAB-4072:WT Mock Time 24 hpt | genotype wild type genotype | sample name E-MTAB-4072:WT Mock Time 24 hpt -1.9319 ERR1142066 Illumina HiSeq 2000 paired end sequencing; Rice perception of symbiotic arbuscular mychorrhizal fungi requires the karrikin receptor complex External Id SAMEA3670741 | Submitter Id E-MTAB-4072:WT Mock Time 12 hpt | genotype wild type genotype | sample name E-MTAB-4072:WT Mock Time 12 hpt -2.4741 ERR1142065 Illumina HiSeq 2000 paired end sequencing; Rice perception of symbiotic arbuscular mychorrhizal fungi requires the karrikin receptor complex External Id SAMEA3670740 | Submitter Id E-MTAB-4072:WT Mock Time 09 hpt | genotype wild type genotype | sample name E-MTAB-4072:WT Mock Time 09 hpt -2.5439 ERR1142058 Illumina HiSeq 2000 paired end sequencing; Rice perception of symbiotic arbuscular mychorrhizal fungi requires the karrikin receptor complex External Id SAMEA3670733 | Submitter Id E-MTAB-4072:WT + karrikin Time 06 hpt | genotype wild type genotype | sample name E-MTAB-4072:WT + karrikin Time 06 hpt 3 SRP083700 Characterize novel lncRNAs responding to stresses in Oryza sativa at transcriptional and post-transcriptional levels loading run annotation attributes 1.5214 SRR4098174 treatment No treatment 1.1599 SRR4098185 treatment Heat (50℃) 1.1494 SRR4098180 treatment Drought (air-dried) -1.9042 SRR4098189 treatment Highlight (50000 Lux) -2.0679 SRR4098186 treatment Heat (50℃) -2.541 SRR4098178 treatment Cold (4℃) 4 SRP320302 The RNA-seq analysis of rice roots colonized by the endophytic bacterium Azoarcus olearius BH72 after one-, three- and seven-days post inoculation and after three days of boosted colonization. loading run annotation attributes 0.8363 SRR14575489 source_name 6 rice roots, non-inoculated (sterile) | age 12 days after planting the seeds | days of incubation 7 days | treatment non-inoculated plants 0.8278 SRR14575461 source_name 6 rice roots, non-inoculated (sterile) | age 6 days after planting the seeds | days of incubation 1 day | treatment non-inoculated plants 0.7837 SRR14575490 source_name 6 rice roots, non-inoculated (sterile) | age 12 days after planting the seeds | days of incubation 7 days | treatment non-inoculated plants -2.3923 SRR14575464 source_name 6 rice roots, colonized with Azoarcus olearius BH72 | age 8 days after planting the seeds | days of incubation 3 days | treatment plants inoculated with Azoarcus olearius BH72 -2.4636 SRR14575468 source_name 6 rice roots, non-inoculated (sterile) | age 8 days after planting the seeds | days of incubation 3 days | treatment non-inoculated plants -2.4895 SRR14575466 source_name 6 rice roots, colonized with Azoarcus olearius BH72 | age 8 days after planting the seeds | days of incubation 3 days | treatment plants inoculated with Azoarcus olearius BH74 5 SRP115210 mRNA sequencing of whole 15 d old Oryza sativa shoots loading run annotation attributes 1.6192 SRR5925597 genotype M202(Sub1) | time point midday 1.5511 SRR5925621 genotype M202(Sub1) | time point control 1.5455 SRR5925453 genotype M202(Sub1) | time point midday -2.0618 SRR5925493 genotype M202(Sub1) | time point dusk -2.4397 SRR5925490 genotype M202(Sub1) | time point dusk -2.4567 SRR5925472 genotype M202 | time point dusk 6 SRP331960 The Evening Complex integrates photoperiod signals to control flowering in rice [RNA-Seq] loading run annotation attributes 0.8948 SRR15411212 photoperiod LD | timepoint ZT10 | genotype WT (Rice Japonica cv. Nipponbare) 0.7894 SRR15411209 photoperiod SD | timepoint ZT6 | genotype WT (Rice Japonica cv. Nipponbare) 0.719 SRR15411206 photoperiod LD | timepoint ZT6 | genotype WT (Rice Japonica cv. Nipponbare) -0.7878 SRR15411195 photoperiod LD | timepoint ZT18 | genotype OsphyB-/- -1.1592 SRR15411175 photoperiod SD | timepoint ZT14 | genotype Oself3-1 -/- Oself3-2 -/- -1.9619 SRR15411188 photoperiod LD | timepoint ZT14 | genotype OsphyB-/- 7 SRP041468 Oryza sativa Japonica Group Transcriptome or Gene expression loading run annotation attributes 0.7921 SRR1264033 0.7583 SRR1264026 0.7484 SRR1563137 treatment ethylene | mutant mhz3_ET -0.8544 SRR1264034 -1.1468 SRR1985031 treatment air | mutant mhz3 -1.5959 SRR1985021 8 SRP093884 PREMATURE INTERNODE ELONGATION 1 coordinates internode elongation in response to florigenic signals at the shoot apex of rice loading run annotation attributes 2.2042 SRR5052737 cultivar Taichung 65 | days after shift 12 | sample number used in data processing 37,38,39 (data merged for analysis) 2.056 SRR5052718 cultivar Nipponbare | days after shift 8 | sample number used in data processing 15,16,17 (data merged for analysis) 2.0307 SRR5052716 cultivar Nipponbare | days after shift 8 | sample number used in data processing 15,16,17 (data merged for analysis) -1.2625 SRR5052710 cultivar Nipponbare | days after shift 0 | sample number used in data processing 5 -1.3665 SRR5052708 cultivar Nipponbare | days after shift 0 | sample number used in data processing 1 -1.4674 SRR5052713 cultivar Nipponbare | days after shift 4 | sample number used in data processing 10 9 SRP258176 Cysteine and methionine biosynthetic enzymes have distinct effects on seed nutritional quality and on molecular phenotypes associated with accumulation of a methionine-rich seed storage protein in rice. loading run annotation attributes 0.6012 SRR11601210 line CGSxSSA | replicate 4 0.5606 SRR11601209 line CGSxSSA | replicate 3 0.5558 SRR11601219 line SAT | replicate 3 -0.6213 SRR11601223 line SSA | replicate 3 -0.6376 SRR11601222 line CGS | replicate 5 -1.3752 SRR11601224 line SATxSSA | replicate 3 10 SRP092175 Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice loading run annotation attributes 1.3203 SRR4457264 source_name 2nd leaf, DAH44 | tissue 2nd leaf | time DAH44 | replicate 1 1.2549 SRR4457248 source_name Flag leaf, DAH44 | tissue Flag leaf | time DAH44 | replicate 3 1.2369 SRR4457266 source_name 2nd leaf, DAH44 | tissue 2nd leaf | time DAH44 | replicate 3 -1.0966 SRR4457258 source_name 2nd leaf, DAH28 | tissue 2nd leaf | time DAH28 | replicate 1 -1.1231 SRR4457252 source_name 2nd leaf, DAH12 | tissue 2nd leaf | time DAH12 | replicate 1 -1.3586 SRR4457237 source_name Flag leaf, DAH20 | tissue Flag leaf | time DAH20 | replicate 1	Loading 1 SRP049054 Oryza sativa Japonica Group cultivar:Nipponbare Transcriptome or Gene expression loading run annotation attributes 0.7554 SRR1616572 tissue shoots | treatment control hydoponic media, containing no 6-benzylaminopurine 0.7533 SRR1616574 tissue shoots | treatment control hydoponic media, containing no 6-benzylaminopurine 0.7478 SRR1616168 tissue shoots | treatment 2 hours in hydroponic media containing 5 micro molar 6-benzylaminopurine -0.7711 SRR1616169 tissue roots | treatment control hydoponic media, containing no 6-benzylaminopurine -0.8163 SRR1616570 tissue roots | treatment control hydoponic media, containing no 6-benzylaminopurine -0.8178 SRR1616571 tissue roots | treatment control hydoponic media, containing no 6-benzylaminopurine 2 SRP254459 Next Generation Sequencing Facilitates Quantitative Analysis of bHLH6 OV, spx4, and wild-type Transcriptomes loading run annotation attributes 0.7492 SRR11444602 source_name Shoot | tissue shoot | genotype spx4 T-DNA 0.7353 SRR11444601 source_name Shoot | tissue shoot | genotype spx4 T-DNA 0.7322 SRR11444597 source_name Shoot | tissue shoot | genotype wild type -0.7976 SRR11444583 source_name Root | tissue root | genotype wild type -0.7987 SRR11444585 source_name Root | tissue root | genotype wild type -0.8028 SRR11444584 source_name Root | tissue root | genotype wild type 3 SRP131107 Adaptation Versus Senescence In Rice: Early Signalling Events Play A Role In Inducing Specificity And Tolerance To Salinity loading run annotation attributes 0.7542 SRR6502088 source_name leaf blade and sheath | cultivar Vialone Nano | tissue leaf 0.7491 SRR6502102 source_name leaf blade and sheath | cultivar Baldo | tissue leaf 0.746 SRR6502090 source_name leaf blade and sheath | cultivar Vialone Nano | tissue leaf -0.759 SRR6502095 source_name roots | cultivar Vialone Nano | tissue root -0.7715 SRR6502094 source_name roots | cultivar Vialone Nano | tissue root -0.7921 SRR6502096 source_name roots | cultivar Vialone Nano | tissue root 4 DRP001141 Gene expression profiling of the early cadmium response includes abiotic stress signaling pathway in rice loading run annotation attributes 0.7001 DRR013399 sample_name DRS012060 | sample comment Cd_1hr_shoot 0.6972 DRR013400 sample_name DRS012060 | sample comment Cd_1hr_shoot 0.6944 DRR013398 sample_name DRS012059 | sample comment Cd_0hr_shoot -0.639 DRR013390 sample_name DRS012057 | sample comment Cd_1hr_root -0.6398 DRR013389 sample_name DRS012056 | sample comment Cd_0hr_root -0.7071 DRR013388 sample_name DRS012056 | sample comment Cd_0hr_root 5 SRP331960 The Evening Complex integrates photoperiod signals to control flowering in rice [RNA-Seq] loading run annotation attributes 0.3726 SRR15411187 photoperiod SD | timepoint ZT6 | genotype OsphyB-/- 0.3441 SRR15411184 photoperiod LD | timepoint ZT6 | genotype OsphyB-/- 0.2932 SRR15411211 photoperiod SD | timepoint ZT6 | genotype WT (Rice Japonica cv. Nipponbare) -0.6624 SRR18358777 photoperiod SD | timepoint ZT14 | genotype OsLUX-/- -0.6697 SRR18358778 photoperiod SD | timepoint ZT14 | genotype OsLUX-/- -0.7011 SRR18358776 photoperiod SD | timepoint ZT14 | genotype OsLUX-/- 6 DRP000716 Diversity in the complexity of phosphate starvation transcriptomes among rice cultivars based on RNA-Seq profiles loading run annotation attributes 0.7124 DRR002693 run No.74 sample_name DRS002156 | sample comment Nipponbare_shoot_22day 0.706 DRR002694 run No.74 sample_name DRS002156 | sample comment Nipponbare_shoot_22day 0.6944 DRR002695 run No.74 sample_name DRS002156 | sample comment Nipponbare_shoot_22day -0.6688 DRR002714 run No.74 sample_name DRS002162 | sample comment Vary Lava 701_root_22day -0.6727 DRR002715 run No.74 sample_name DRS002162 | sample comment Vary Lava 701_root_22day -0.6946 DRR002716 run No.74 sample_name DRS002162 | sample comment Vary Lava 701_root_22day 7 DRP000315 Transcriptome analysis of rice seedlings during Pi-starvation and Pi-sufficient stress loading run annotation attributes 0.7856 DRR000759 sample_name DRS000420 | sample comment Total mRNA from shoot of rice (Oryza sativa ssp. Japonica cv. Nipponbare) seedling | tissue shoot 0.7643 DRR000768 sample_name DRS000420 | sample comment Total mRNA from shoot of rice (Oryza sativa ssp. Japonica cv. Nipponbare) seedling | tissue shoot 0.762 DRR000752 sample_name DRS000420 | sample comment Total mRNA from shoot of rice (Oryza sativa ssp. Japonica cv. Nipponbare) seedling | tissue shoot -0.6886 DRR000763 sample_name DRS000419 | sample comment Total mRNA from root of rice (Oryza sativa ssp. Japonica cv. Nipponbare) seedling | tissue root -0.6888 DRR000753 sample_name DRS000419 | sample comment Total mRNA from root of rice (Oryza sativa ssp. Japonica cv. Nipponbare) seedling | tissue root -0.6919 DRR000761 sample_name DRS000419 | sample comment Total mRNA from root of rice (Oryza sativa ssp. Japonica cv. Nipponbare) seedling | tissue root 8 SRP083700 Characterize novel lncRNAs responding to stresses in Oryza sativa at transcriptional and post-transcriptional levels loading run annotation attributes 0.5372 SRR4098195 source_name Leaves of seedlings | tissue Leaves of seedlings 0.4709 SRR4098194 source_name Leaves of seedlings | tissue Leaves of seedlings 0.3124 SRR4098193 source_name Leaves of seedlings | tissue Leaves of seedlings -0.4873 SRR4098199 source_name Roots of seedlings | tissue Roots of seedlings -0.5317 SRR4098200 source_name Roots of seedlings | tissue Roots of seedlings -0.6506 SRR4098201 source_name Roots of seedlings | tissue Roots of seedlings 9 SRP041468 Oryza sativa Japonica Group Transcriptome or Gene expression loading run annotation attributes 0.6798 SRR1985044 tissue seedling | treatment air | mutant mhz5 0.6597 SRR1985032 tissue seedling | treatment air | mutant mhz3 0.6299 SRR1985015 tissue seedling -0.6048 SRR1564293 tissue root | treatment mock | mutant Wild type -0.607 SRR1564270 tissue seedling | treatment ethylene | mutant mhz5_ET -0.6083 SRR1564274 tissue seedling | treatment air | mutant mhz6 10 SRP356482 A plant-specific splicing factor RS33 regulates abiotic stress responses in rice loading run annotation attributes 0.3979 SRR17720818 genotype rs33 -/- | treatment 4ºC, 6hours 0.3046 SRR17720827 genotype rs33 -/- | treatment 4ºC, 3hours 0.2678 SRR17720816 genotype WT | treatment 4ºC, 3hours -0.221 SRR17720825 genotype rs33 -/- | treatment Mock, 6hours -0.2704 SRR17720826 genotype rs33 -/- | treatment Mock, 6hours -0.4186 SRR17720814 genotype WT | treatment Mock, 6hours	Loading 1 SRP220388 Oryza sativa Transcriptome or Gene expression loading run annotation attributes 0.5157 SRR10058415 tissue NIP_Cd_Flag leaf 0.5131 SRR10058418 tissue NIP_Si_Flag leaf 0.5122 SRR10058411 tissue NIP_Cd+Si_Flag leaf -0.2839 SRR10058414 tissue NIP_Cd_Last node -0.2845 SRR10058419 tissue NIP_CK_Spikelet -0.3759 SRR10058417 tissue NIP_Si_Last node 2 SRP327364 Differentiation of the high night temperature response in leaf segments of rice cultivars with contrasting tolerance loading run annotation attributes 0.492 SRR15060389 cultivar Nipponbare | tissue Tip | hnt-sensitivity tolerant | treatment HNT 0.4244 SRR15060375 cultivar CT9993-5-10-1M | tissue Tip | hnt-sensitivity sensitive | treatment HNT 0.424 SRR15060405 cultivar Nipponbare | tissue Middle | hnt-sensitivity tolerant | treatment HNT -0.4638 SRR15060454 cultivar Nipponbare | tissue Sheath | hnt-sensitivity tolerant | treatment HNT -0.4722 SRR15060456 cultivar Nipponbare | tissue Sheath | hnt-sensitivity tolerant | treatment HNT -0.5342 SRR15060373 cultivar Nipponbare | tissue Sheath | hnt-sensitivity tolerant | treatment Control 3 SRP357677 Transcriptome differences between wild-type and ERF096 transgenic rice before and after cold treatment loading run annotation attributes 0.4624 SRR17843178 source_name wild type | genotype wild type 0.2685 SRR17843164 source_name ERF096-RNAi | genotype ERF096-RNAi 0.1652 SRR17843162 source_name ERF096-RNAi | genotype ERF096-RNAi -0.2232 SRR17843170 source_name wild type | genotype wild type -0.262 SRR17843171 source_name ERF096-RNAi | genotype ERF096-RNAi -0.2913 SRR17843172 source_name ERF096-RNAi | genotype ERF096-RNAi 4 SRP170932 A combined small RNA and transcriptome sequencing analysis illuminates the response of resistance to brown planthopper in rice [RNA-seq] loading run annotation attributes 0.4591 SRR8247783 bph feeding status late feeding stage (48-72h) 0.3977 SRR8247784 bph feeding status late feeding stage (48-72h) 0.3881 SRR8247782 bph feeding status late feeding stage (48-72h) -0.3576 SRR8247777 bph feeding status non-infested (0h) -0.3749 SRR8247776 bph feeding status non-infested (0h) -0.4273 SRR8247778 bph feeding status non-infested (0h) 5 SRP115210 mRNA sequencing of whole 15 d old Oryza sativa shoots loading run annotation attributes 0.4493 SRR5925539 time point control 0.4468 SRR5925541 time point control 0.4458 SRR5925540 time point control -0.2994 SRR5925620 time point midnight -0.2994 SRR5925618 time point midnight -0.3024 SRR5925619 time point midnight 6 SRP331960 The Evening Complex integrates photoperiod signals to control flowering in rice [RNA-Seq] loading run annotation attributes 0.4278 SRR15411214 photoperiod LD | timepoint ZT10 | genotype WT (Rice Japonica cv. Nipponbare) 0.3993 SRR15411215 photoperiod SD | timepoint ZT10 | genotype WT (Rice Japonica cv. Nipponbare) 0.3962 SRR15411188 photoperiod LD | timepoint ZT14 | genotype OsphyB-/- -0.4065 SRR18358778 photoperiod SD | timepoint ZT14 | genotype OsLUX-/- -0.4099 SRR15411221 photoperiod SD | timepoint ZT14 | genotype WT (Rice Japonica cv. Nipponbare) -0.4371 SRR18358776 photoperiod SD | timepoint ZT14 | genotype OsLUX-/- 7 SRP041468 Oryza sativa Japonica Group Transcriptome or Gene expression loading run annotation attributes 0.4219 SRR1564280 treatment ethylene | mutant mhz6_ET 0.4158 SRR1987332 0.4068 SRR1264030 -0.4709 SRR1985026 -0.4827 SRR1985012 -0.4832 SRR1985030 8 SRP254459 Next Generation Sequencing Facilitates Quantitative Analysis of bHLH6 OV, spx4, and wild-type Transcriptomes loading run annotation attributes 0.3935 SRR11444598 source_name Shoot | tissue shoot | age 21-day-old seedlings grown in 200 μM Pi | genotype bHLH6 OV 0.3588 SRR11444604 source_name Shoot | tissue shoot | age 7-day-old seedlings treated with 10 μM Pi for 2 weeks | genotype wild type 0.3427 SRR11444599 source_name Shoot | tissue shoot | age 21-day-old seedlings grown in 200 μM Pi | genotype bHLH6 OV -0.2609 SRR11444584 source_name Root | tissue root | age 21-day-old seedlings grown in 200 μM Pi | genotype wild type -0.282 SRR11444594 source_name Root | tissue root | age 7-day-old seedlings treated with 10 μM Pi for 2 weeks | genotype wild type -0.303 SRR11444592 source_name Root | tissue root | age 7-day-old seedlings treated with 10 μM Pi for 2 weeks | genotype wild type 9 SRP056884 Host transcriptional reprogramming across diverse strains of the rice bacterial leaf streak pathogen Xanthomonas oryzae pv.oryzicola loading run annotation attributes 0.3911 SRR1952788 source_name 48 hrs after inoculation with B8-12 0.3854 SRR1952789 source_name 48 hrs after inoculation with B8-12 0.385 SRR1952801 source_name 48 hrs after inoculation with CFBP7331 -0.2238 SRR1952779 source_name 48 hrs after inoculation with BLS256 -0.24 SRR1952798 source_name 48 hrs after inoculation with BXOR1 -0.2732 SRR1952799 source_name 48 hrs after inoculation with CFBP7331 10 SRP115030 A viral protein promotes host SAMS1 activity and ethylene production for the benefit of virus infection loading run annotation attributes 0.3752 SRR5909335 source_name Oryza sativa, RDV-infected (inoculated with insect carrying RDV) | age 42 days old seedling (4 weeks post inoculation) | genotype RDV-infected (inoculated with insect carrying RDV) 0.3735 SRR5909334 source_name Oryza sativa, RDV-infected (inoculated with insect carrying RDV) | age 42 days old seedling (4 weeks post inoculation) | genotype RDV-infected (inoculated with insect carrying RDV) 0.2403 SRR5909333 source_name Oryza sativa, RDV-infected (inoculated with insect carrying RDV) | age 42 days old seedling (4 weeks post inoculation) | genotype RDV-infected (inoculated with insect carrying RDV) -0.2026 SRR5909343 source_name Oryza sativa, OsSAMS1 CRISPR/Cas9 transgene | age 42 days old seedling | genotype OsSAMS1 CRISPR/Cas9 transgene -0.2382 SRR5909346 source_name Oryza sativa, S11 overexpression transgene | age 42 days old seedling | genotype S11 overexpression transgene -0.4081 SRR5909342 source_name Oryza sativa, OsSAMS1 CRISPR/Cas9 transgene | age 42 days old seedling | genotype OsSAMS1 CRISPR/Cas9 transgene	Loading 1 SRP229366 Next Generation Sequencing Facilitates Quantitative Analysis of ZH11 and ONAC127/ONAC129 transgenic plants Transcriptomes loading run annotation attributes 0.5405 SRR10423445 condition Normal cultivation condition 0.5394 SRR10423447 condition Normal cultivation condition 0.486 SRR10423446 condition Normal cultivation condition -0.5369 SRR10423444 condition Natural heat stress -0.552 SRR10423442 condition Natural heat stress -0.5521 SRR10423443 condition Natural heat stress 2 SRP327364 Differentiation of the high night temperature response in leaf segments of rice cultivars with contrasting tolerance loading run annotation attributes 0.4736 SRR15060438 cultivar CT9993-5-10-1M | tissue Sheath | hnt-sensitivity sensitive | treatment HNT 0.46 SRR15060439 cultivar CT9993-5-10-1M | tissue Sheath | hnt-sensitivity sensitive | treatment HNT 0.4122 SRR15060436 cultivar CT9993-5-10-1M | tissue Sheath | hnt-sensitivity sensitive | treatment HNT -0.447 SRR15060340 cultivar Nipponbare | tissue Middle | hnt-sensitivity tolerant | treatment Control -0.4759 SRR15060328 cultivar Nipponbare | tissue Tip | hnt-sensitivity tolerant | treatment Control -0.4809 SRR15060329 cultivar Nipponbare | tissue Tip | hnt-sensitivity tolerant | treatment Control 3 ERP013234 Rice perception of symbiotic arbuscular mychorrhizal fungi requires the karrikin receptor complex loading run annotation attributes 0.3364 ERR1142045 Illumina HiSeq 2000 paired end sequencing; Rice perception of symbiotic arbuscular mychorrhizal fungi requires the karrikin receptor complex External Id SAMEA3670720 | INSDC last update 2018-03-09T09:27:00Z | Submitter Id E-MTAB-4072:hebibaAOC + GSE Time 24 hpt | genotype mutant | sample name E-MTAB-4072:hebibaAOC + GSE Time 24 hpt 0.2809 ERR1142061 Illumina HiSeq 2000 paired end sequencing; Rice perception of symbiotic arbuscular mychorrhizal fungi requires the karrikin receptor complex External Id SAMEA3670736 | INSDC last update 2018-03-09T09:26:55Z | Submitter Id E-MTAB-4072:WT + karrikin Time 24 hpt | genotype wild type genotype | sample name E-MTAB-4072:WT + karrikin Time 24 hpt 0.2231 ERR1142058 Illumina HiSeq 2000 paired end sequencing; Rice perception of symbiotic arbuscular mychorrhizal fungi requires the karrikin receptor complex External Id SAMEA3670733 | INSDC last update 2018-03-09T09:26:55Z | Submitter Id E-MTAB-4072:WT + karrikin Time 06 hpt | genotype wild type genotype | sample name E-MTAB-4072:WT + karrikin Time 06 hpt -0.2023 ERR1142059 Illumina HiSeq 2000 paired end sequencing; Rice perception of symbiotic arbuscular mychorrhizal fungi requires the karrikin receptor complex External Id SAMEA3670734 | INSDC last update 2018-03-09T09:26:55Z | Submitter Id E-MTAB-4072:WT + karrikin Time 09 hpt | genotype wild type genotype | sample name E-MTAB-4072:WT + karrikin Time 09 hpt -0.3106 ERR1142041 Illumina HiSeq 2000 paired end sequencing; Rice perception of symbiotic arbuscular mychorrhizal fungi requires the karrikin receptor complex External Id SAMEA3670716 | INSDC last update 2018-03-09T09:27:07Z | Submitter Id E-MTAB-4072:hebibaAOC + GSE Time 03 hpt | genotype mutant | sample name E-MTAB-4072:hebibaAOC + GSE Time 03 hpt -0.4321 ERR1142057 Illumina HiSeq 2000 paired end sequencing; Rice perception of symbiotic arbuscular mychorrhizal fungi requires the karrikin receptor complex External Id SAMEA3670732 | INSDC last update 2018-03-09T09:26:55Z | Submitter Id E-MTAB-4072:WT + karrikin Time 03 hpt | genotype wild type genotype | sample name E-MTAB-4072:WT + karrikin Time 03 hpt 4 SRP309118 A mycorrhiza-associated receptor-like kinase with an ancient origin in the green lineage loading run annotation attributes 0.3445 SRR13847363 genotype ark2 mutant 0.3116 SRR13847381 genotype wild type 0.3071 SRR13847386 genotype wild type -0.2188 SRR13847375 genotype ark1ark2 double mutant -0.2226 SRR13847378 genotype wild type -0.4142 SRR13847368 genotype ark1ark2 double mutant 5 SRP115030 A viral protein promotes host SAMS1 activity and ethylene production for the benefit of virus infection loading run annotation attributes 0.3651 SRR5909340 source_name Oryza sativa, OsSAMS1 overexpression transgene | age 42 days old seedling | genotype OsSAMS1 overexpression transgene 0.3221 SRR5909337 source_name Oryza sativa, wild type | age 42 days old seedling | genotype wild type 0.3123 SRR5909339 source_name Oryza sativa, OsSAMS1 overexpression transgene | age 42 days old seedling | genotype OsSAMS1 overexpression transgene -0.295 SRR5909334 source_name Oryza sativa, RDV-infected (inoculated with insect carrying RDV) | age 42 days old seedling (4 weeks post inoculation) | genotype RDV-infected (inoculated with insect carrying RDV) -0.3881 SRR5909332 source_name Oryza sativa, wild type (inoculated with virus free insect) | age 42 days old seedling (4 weeks post inoculation) | genotype wild type (inoculated with virus free insect) -0.4079 SRR5909331 source_name Oryza sativa, wild type (inoculated with virus free insect) | age 42 days old seedling (4 weeks post inoculation) | genotype wild type (inoculated with virus free insect) 6 SRP356482 A plant-specific splicing factor RS33 regulates abiotic stress responses in rice loading run annotation attributes 0.2781 SRR17720816 genotype WT | treatment 4ºC, 3hours 0.269 SRR17720822 genotype WT | treatment 200mM NaCl, 3hours 0.2083 SRR17720823 genotype WT | treatment Mock, 3hours -0.1979 SRR17720832 genotype rs33 -/- | treatment Mock, 3hours -0.402 SRR17720826 genotype rs33 -/- | treatment Mock, 6hours -0.4064 SRR17720825 genotype rs33 -/- | treatment Mock, 6hours 7 SRP331960 The Evening Complex integrates photoperiod signals to control flowering in rice [RNA-Seq] loading run annotation attributes 0.5222 SRR15411233 photoperiod SD | timepoint ZT24 | genotype WT (Rice Japonica cv. Nipponbare) 0.4978 SRR15411234 photoperiod SD | timepoint ZT24 | genotype WT (Rice Japonica cv. Nipponbare) 0.4824 SRR15411230 photoperiod LD | timepoint ZT24 | genotype WT (Rice Japonica cv. Nipponbare) -0.3245 SRR15411219 photoperiod LD | timepoint ZT14 | genotype WT (Rice Japonica cv. Nipponbare) -0.3301 SRR15411173 photoperiod SD | timepoint ZT14 | genotype Oself3-1 -/- Oself3-2 -/- -0.3922 SRR15411223 photoperiod SD | timepoint ZT14 | genotype WT (Rice Japonica cv. Nipponbare) 8 SRP167327 A novel positive feed-back loop mediated by the membrane-associated transcription factor NTL3 is important for heat stress tolerance in rice loading run annotation attributes 0.2899 SRR8140289 genotype NTL3-/- 0.2896 SRR8140285 genotype NTL3-/- 0.2852 SRR8140290 genotype NTL3-/- -0.2962 SRR8140268 genotype wild type -0.3879 SRR8140269 genotype wild type -0.391 SRR8140270 genotype wild type 9 SRP083700 Characterize novel lncRNAs responding to stresses in Oryza sativa at transcriptional and post-transcriptional levels loading run annotation attributes 0.5676 SRR4098183 source_name Seedlings | tissue Seedlings | treatment Drought (air-dried) 0.3992 SRR4098175 source_name Seedlings | tissue Seedlings | treatment No treatment 0.3453 SRR4098192 source_name Seedlings | tissue Seedlings | treatment High-salt (300 mM NaCl) -0.3119 SRR4098197 source_name Panicles of seedlings | tissue Panicles of seedlings | treatment No treatment -0.3453 SRR4098196 source_name Panicles of seedlings | tissue Panicles of seedlings | treatment No treatment -0.3846 SRR4098188 source_name Seedlings | tissue Seedlings | treatment Highlight (50000 Lux) 10 SRP106796 Co-overexpression of the constitutively active form of OsbZIP46 and ABA-activated protein kinase SAPK6 improves drought and temperature stress resistance in rice loading run annotation attributes 0.3043 SRR5526305 genotype OsbZIP46CA1 Overexpressing line -4 | treatment Normal 0.2942 SRR5526309 genotype SAPK6 Overexpressing line -19 | treatment Normal 0.2594 SRR5526307 genotype OsbZIP46CA1 Overexpressing line -19 | treatment Normal -0.3452 SRR5526304 genotype OsbZIP46CA1 Overexpressing line -4 | treatment Drought -0.3537 SRR5526314 genotype OsbZIP46CA1 and SAPK6 Co-overexpressing line -138 | treatment Drought -0.3771 SRR5526306 genotype OsbZIP46CA1 Overexpressing line -19 | treatment Drought	Loading 1 SRP331960 The Evening Complex integrates photoperiod signals to control flowering in rice [RNA-Seq] loading run annotation attributes 0.593 SRR15411180 photoperiod SD | timepoint ZT18 | genotype Oself3-1 -/- Oself3-2 -/- 0.5555 SRR15411222 photoperiod SD | timepoint ZT14 | genotype WT (Rice Japonica cv. Nipponbare) 0.5312 SRR15411174 photoperiod SD | timepoint ZT14 | genotype Oself3-1 -/- Oself3-2 -/- -0.439 SRR15411184 photoperiod LD | timepoint ZT6 | genotype OsphyB-/- -0.4416 SRR15411168 photoperiod SD | timepoint ZT6 | genotype Oself3-1 -/- Oself3-2 -/- -0.4788 SRR15411206 photoperiod LD | timepoint ZT6 | genotype WT (Rice Japonica cv. Nipponbare) 2 SRP320302 The RNA-seq analysis of rice roots colonized by the endophytic bacterium Azoarcus olearius BH72 after one-, three- and seven-days post inoculation and after three days of boosted colonization. loading run annotation attributes 0.4566 SRR14575486 source_name 6 rice roots, colonized with Azoarcus olearius BH72 | age 12 days after planting the seeds | days of incubation 7 days | treatment plants inoculated with Azoarcus olearius BH74 0.4522 SRR14575484 source_name 6 rice roots, colonized with Azoarcus olearius BH72 | age 12 days after planting the seeds | days of incubation 7 days | treatment plants inoculated with Azoarcus olearius BH74 0.4439 SRR14575487 source_name 6 rice roots, colonized with Azoarcus olearius BH72 | age 12 days after planting the seeds | days of incubation 7 days | treatment plants inoculated with Azoarcus olearius BH74 -0.3339 SRR14575453 source_name 6 rice roots, non-inoculated (sterile) | age 6 days after planting the seeds | days of incubation 1 day | treatment non-inoculated plants -0.3405 SRR14575455 source_name 6 rice roots, non-inoculated (sterile) | age 6 days after planting the seeds | days of incubation 1 day | treatment non-inoculated plants -0.3407 SRR14575454 source_name 6 rice roots, non-inoculated (sterile) | age 6 days after planting the seeds | days of incubation 1 day | treatment non-inoculated plants 3 SRP115210 mRNA sequencing of whole 15 d old Oryza sativa shoots loading run annotation attributes 0.4545 SRR5925554 time point 3d_sub 0.4525 SRR5925553 time point 3d_sub 0.4508 SRR5925552 time point 3d_sub -0.4232 SRR5925562 time point midday -0.4302 SRR5925565 time point midday -0.432 SRR5925564 time point midday 4 SRP170932 A combined small RNA and transcriptome sequencing analysis illuminates the response of resistance to brown planthopper in rice [RNA-seq] loading run annotation attributes 0.4008 SRR8247783 bph feeding status late feeding stage (48-72h) 0.3583 SRR8247784 bph feeding status late feeding stage (48-72h) 0.3546 SRR8247782 bph feeding status late feeding stage (48-72h) -0.3539 SRR8247776 bph feeding status non-infested (0h) -0.3965 SRR8247777 bph feeding status non-infested (0h) -0.4294 SRR8247778 bph feeding status non-infested (0h) 5 SRP356482 A plant-specific splicing factor RS33 regulates abiotic stress responses in rice loading run annotation attributes 0.3096 SRR17720811 genotype WT | treatment 200mM NaCl, 6hours 0.2777 SRR17720813 genotype WT | treatment Mock, 6hours 0.2574 SRR17720820 genotype rs33 -/- | treatment 200mM NaCl, 6hours -0.2286 SRR17720816 genotype WT | treatment 4ºC, 3hours -0.3021 SRR17720828 genotype rs33 -/- | treatment 4ºC, 3hours -0.334 SRR17720827 genotype rs33 -/- | treatment 4ºC, 3hours 6 ERP024350 Transcriptome profiling of short-term response to chilling stress in resistant and susceptible rice seedlings loading run annotation attributes 0.308 ERR2061593 Illumina HiSeq 3000 paired end sequencing; Transcriptome profiling of short-term response to chilling stress in resistant and susceptible rice seedlings External Id SAMEA104190769 | Submitter Id E-MTAB-5941:Thaibonnet_02h_1 | cultivar Thaibonnet | phenotype cold stress sensitive | replicate 1 | sample name E-MTAB-5941:Thaibonnet_02h_1 0.2209 ERR2061602 Illumina HiSeq 3000 paired end sequencing; Transcriptome profiling of short-term response to chilling stress in resistant and susceptible rice seedlings External Id SAMEA104190778 | Submitter Id E-MTAB-5941:Volano_02h_1 | cultivar Volano | phenotype cold stress tolerant | replicate 1 | sample name E-MTAB-5941:Volano_02h_1 0.1977 ERR2061595 Illumina HiSeq 3000 paired end sequencing; Transcriptome profiling of short-term response to chilling stress in resistant and susceptible rice seedlings External Id SAMEA104190771 | Submitter Id E-MTAB-5941:Thaibonnet_02h_3 | cultivar Thaibonnet | phenotype cold stress sensitive | replicate 3 | sample name E-MTAB-5941:Thaibonnet_02h_3 -0.1558 ERR2061590 Illumina HiSeq 3000 paired end sequencing; Transcriptome profiling of short-term response to chilling stress in resistant and susceptible rice seedlings External Id SAMEA104190766 | Submitter Id E-MTAB-5941:Thaibonnet_00h_1 | cultivar Thaibonnet | phenotype cold stress sensitive | replicate 1 | sample name E-MTAB-5941:Thaibonnet_00h_1 -0.1563 ERR2061591 Illumina HiSeq 3000 paired end sequencing; Transcriptome profiling of short-term response to chilling stress in resistant and susceptible rice seedlings External Id SAMEA104190767 | Submitter Id E-MTAB-5941:Thaibonnet_00h_2 | cultivar Thaibonnet | phenotype cold stress sensitive | replicate 2 | sample name E-MTAB-5941:Thaibonnet_00h_2 -0.2014 ERR2061607 Illumina HiSeq 3000 paired end sequencing; Transcriptome profiling of short-term response to chilling stress in resistant and susceptible rice seedlings External Id SAMEA104190783 | Submitter Id E-MTAB-5941:Volano_10h_3 | cultivar Volano | phenotype cold stress tolerant | replicate 3 | sample name E-MTAB-5941:Volano_10h_3 7 SRP309118 A mycorrhiza-associated receptor-like kinase with an ancient origin in the green lineage loading run annotation attributes 0.2965 SRR13847373 genotype ark1ark2 double mutant 0.2826 SRR13847372 genotype ark1ark2 double mutant 0.2202 SRR13847385 genotype wild type -0.2425 SRR13847387 genotype wild type -0.2461 SRR13847359 genotype ark2 mutant -0.2556 SRR13847383 genotype wild type 8 SRP151597 Chromosomal deletions drove parallel domestication of plant architecture in Asian and African rice loading run annotation attributes 0.286 SRR7450906 genotype transgenic plants of ZnF5 | phenotype semi-prostrate growth 0.2724 SRR7450910 genotype control plants of ZnF5 and ZnF7 transgenic lines | phenotype erect growth 0.2684 SRR7450911 genotype control plants of ZnF5 and ZnF7 transgenic lines | phenotype erect growth -0.2673 SRR7450898 genotype transgenic plants of PROG1 | phenotype prostrate growth -0.2741 SRR7450900 genotype transgenic plants of PROG1 | phenotype prostrate growth -0.3008 SRR7450899 genotype transgenic plants of PROG1 | phenotype prostrate growth 9 SRP041468 Oryza sativa Japonica Group Transcriptome or Gene expression loading run annotation attributes 0.277 SRR1987333 0.2499 SRR1985045 treatment ethylene | mutant mhz5_ET 0.2351 SRR1985046 treatment ethylene | mutant mhz5_ET -0.2767 SRR1264034 -0.2827 SRR1264036 -0.288 SRR1563135 treatment air | mutant mhz3 10 SRP020657 Gene expression profiles in growth-inhibition rice seedling implanted by the low-energy N+ beam loading run annotation attributes 0.263 SRR823555 response Significant damage | treatment implantation with ion fluence of 6×1017N+/cm2 and 8×1017N+/cm2 0.2625 SRR823552 response Significant damage | treatment implantation with ion fluence of 6×1017N+/cm2 and 8×1017N+/cm2 0.2566 SRR823554 response Significant damage | treatment implantation with ion fluence of 6×1017N+/cm2 and 8×1017N+/cm2 -0.2546 SRR823545 response control | treatment control -0.2569 SRR823543 response control | treatment control -0.2581 SRR823546 response control | treatment control	Loading 1 SRP167327 A novel positive feed-back loop mediated by the membrane-associated transcription factor NTL3 is important for heat stress tolerance in rice loading run annotation attributes 0.4931 SRR8140269 genotype wild type 0.493 SRR8140270 genotype wild type 0.4831 SRR8140272 genotype wild type -0.4418 SRR8140289 genotype NTL3-/- -0.4431 SRR8140286 genotype NTL3-/- -0.4445 SRR8140285 genotype NTL3-/- 2 SRP056884 Host transcriptional reprogramming across diverse strains of the rice bacterial leaf streak pathogen Xanthomonas oryzae pv.oryzicola loading run annotation attributes 0.4196 SRR1952796 source_name 48 hrs after inoculation with BXOR1 0.3761 SRR1952808 source_name 48 hrs after mock-inoculation 0.2985 SRR1952809 source_name 48 hrs after mock-inoculation -0.2332 SRR1952787 source_name 48 hrs after inoculation with B8-12 -0.2408 SRR1952780 source_name 48 hrs after inoculation with BLS256 -0.2852 SRR1952789 source_name 48 hrs after inoculation with B8-12 3 SRP106796 Co-overexpression of the constitutively active form of OsbZIP46 and ABA-activated protein kinase SAPK6 improves drought and temperature stress resistance in rice loading run annotation attributes 0.407 SRR5526311 genotype SAPK6 Overexpressing line -33 | treatment Normal 0.3515 SRR5526313 genotype OsbZIP46CA1 and SAPK6 Co-overexpressing line -125 | treatment Normal 0.3184 SRR5526305 genotype OsbZIP46CA1 Overexpressing line -4 | treatment Normal -0.3874 SRR5526312 genotype OsbZIP46CA1 and SAPK6 Co-overexpressing line -125 | treatment Drought -0.404 SRR5526308 genotype SAPK6 Overexpressing line -19 | treatment Drought -0.4072 SRR5526310 genotype SAPK6 Overexpressing line -33 | treatment Drought 4 SRP331960 The Evening Complex integrates photoperiod signals to control flowering in rice [RNA-Seq] loading run annotation attributes 0.364 SRR15411235 photoperiod SD | timepoint ZT24 | genotype WT (Rice Japonica cv. Nipponbare) 0.3618 SRR15411231 photoperiod LD | timepoint ZT24 | genotype WT (Rice Japonica cv. Nipponbare) 0.2787 SRR15411230 photoperiod LD | timepoint ZT24 | genotype WT (Rice Japonica cv. Nipponbare) -0.4023 SRR15411165 photoperiod LD | timepoint ZT6 | genotype Oself3-1 -/- Oself3-2 -/- -0.4028 SRR15411216 photoperiod SD | timepoint ZT10 | genotype WT (Rice Japonica cv. Nipponbare) -0.4108 SRR15411217 photoperiod SD | timepoint ZT10 | genotype WT (Rice Japonica cv. Nipponbare) 5 SRP357677 Transcriptome differences between wild-type and ERF096 transgenic rice before and after cold treatment loading run annotation attributes 0.3328 SRR17843179 source_name wild type | genotype wild type 0.293 SRR17843175 source_name ERF096-OX | genotype ERF096-OX 0.2441 SRR17843177 source_name wild type | genotype wild type -0.248 SRR17843167 source_name ERF096-OX | genotype ERF096-OX -0.2485 SRR17843165 source_name ERF096-OX | genotype ERF096-OX -0.2527 SRR17843162 source_name ERF096-RNAi | genotype ERF096-RNAi 6 SRP327364 Differentiation of the high night temperature response in leaf segments of rice cultivars with contrasting tolerance loading run annotation attributes 0.3024 SRR15060410 cultivar CT9993-5-10-1M | tissue Base 0.2873 SRR15060409 cultivar CT9993-5-10-1M | tissue Base 0.2843 SRR15060412 cultivar CT9993-5-10-1M | tissue Base -0.3793 SRR15060387 cultivar M202 | tissue Tip -0.3931 SRR15060388 cultivar M202 | tissue Tip -0.4278 SRR15060386 cultivar M202 | tissue Tip 7 SRP115210 mRNA sequencing of whole 15 d old Oryza sativa shoots loading run annotation attributes 0.2939 SRR5925553 genotype M202(Sub1) | time point 3d_sub 0.2866 SRR5925550 genotype M202(Sub1) | time point 3d_sub 0.2862 SRR5925554 genotype M202(Sub1) | time point 3d_sub -0.3645 SRR5925476 genotype M202 | time point dusk -0.3726 SRR5925473 genotype M202 | time point dusk -0.3799 SRR5925471 genotype M202 | time point dusk 8 SRP362107 Oryza sativa Transcriptome or Gene expression loading run annotation attributes 0.2809 SRR18189506 isolate Nip-CK2 0.2604 SRR18189505 isolate OE5-GA1 0.2555 SRR18189503 isolate Nip-GA1 -0.1565 SRR18189500 isolate OE2-CK2 -0.2288 SRR18189497 isolate OE5-CK1 -0.2332 SRR18189496 isolate OE5-CK2 9 SRP356482 A plant-specific splicing factor RS33 regulates abiotic stress responses in rice loading run annotation attributes 0.2739 SRR17720823 genotype WT | treatment Mock, 3hours 0.2516 SRR17720825 genotype rs33 -/- | treatment Mock, 6hours 0.2515 SRR17720814 genotype WT | treatment Mock, 6hours -0.2034 SRR17720818 genotype rs33 -/- | treatment 4ºC, 6hours -0.2137 SRR17720829 genotype rs33 -/- | treatment 200mM NaCl, 3hours -0.2858 SRR17720810 genotype WT | treatment 4ºC, 6hours 10 SRP083700 Characterize novel lncRNAs responding to stresses in Oryza sativa at transcriptional and post-transcriptional levels loading run annotation attributes 0.2709 SRR4098186 source_name Seedlings | tissue Seedlings | treatment Heat (50℃) 0.1156 SRR4098200 source_name Roots of seedlings | tissue Roots of seedlings | treatment No treatment 0.093 SRR4098199 source_name Roots of seedlings | tissue Roots of seedlings | treatment No treatment -0.1957 SRR4098183 source_name Seedlings | tissue Seedlings | treatment Drought (air-dried) -0.2482 SRR4098190 source_name Seedlings | tissue Seedlings | treatment High-salt (300 mM NaCl) -0.2975 SRR4098179 source_name Seedlings | tissue Seedlings | treatment Drought (air-dried)	Loading 1 SRP229366 Next Generation Sequencing Facilitates Quantitative Analysis of ZH11 and ONAC127/ONAC129 transgenic plants Transcriptomes loading run annotation attributes 0.3254 SRR10423437 condition Normal cultivation condition | genotype ONAC127 mutant 0.3031 SRR10423422 condition Natural heat stress | genotype ONAC129 over expressed 0.2992 SRR10423443 condition Natural heat stress | genotype wildtype -0.409 SRR10423426 condition Normal cultivation condition | genotype ONAC127 over expressed -0.4122 SRR10423427 condition Normal cultivation condition | genotype ONAC129 over expressed -0.4167 SRR10423425 condition Normal cultivation condition | genotype ONAC127 over expressed 2 SRP167327 A novel positive feed-back loop mediated by the membrane-associated transcription factor NTL3 is important for heat stress tolerance in rice loading run annotation attributes 0.3773 SRR8140278 genotype wild type 0.3745 SRR8140277 genotype wild type 0.2776 SRR8140276 genotype wild type -0.3982 SRR8140283 genotype NTL3-/- -0.4079 SRR8140282 genotype NTL3-/- -0.408 SRR8140281 genotype NTL3-/- 3 SRP331960 The Evening Complex integrates photoperiod signals to control flowering in rice [RNA-Seq] loading run annotation attributes 0.4103 SRR15411234 photoperiod SD | timepoint ZT24 | genotype WT (Rice Japonica cv. Nipponbare) 0.3716 SRR15411233 photoperiod SD | timepoint ZT24 | genotype WT (Rice Japonica cv. Nipponbare) 0.3033 SRR15411231 photoperiod LD | timepoint ZT24 | genotype WT (Rice Japonica cv. Nipponbare) -0.3423 SRR15411217 photoperiod SD | timepoint ZT10 | genotype WT (Rice Japonica cv. Nipponbare) -0.3502 SRR15411215 photoperiod SD | timepoint ZT10 | genotype WT (Rice Japonica cv. Nipponbare) -0.3792 SRR15411165 photoperiod LD | timepoint ZT6 | genotype Oself3-1 -/- Oself3-2 -/- 4 SRP357677 Transcriptome differences between wild-type and ERF096 transgenic rice before and after cold treatment loading run annotation attributes 0.2455 SRR17843169 source_name wild type | genotype wild type 0.2097 SRR17843164 source_name ERF096-RNAi | genotype ERF096-RNAi 0.2093 SRR17843163 source_name ERF096-RNAi | genotype ERF096-RNAi -0.1763 SRR17843174 source_name ERF096-OX | genotype ERF096-OX -0.3008 SRR17843178 source_name wild type | genotype wild type -0.355 SRR17843176 source_name ERF096-OX | genotype ERF096-OX 5 SRP092175 Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice loading run annotation attributes 0.1837 SRR4457234 source_name Flag leaf, DAH12 | tissue Flag leaf | time DAH12 | replicate 1 0.1826 SRR4457255 source_name 2nd leaf, DAH20 | tissue 2nd leaf | time DAH20 | replicate 1 0.1586 SRR4457256 source_name 2nd leaf, DAH20 | tissue 2nd leaf | time DAH20 | replicate 2 -0.1586 SRR4457251 source_name 2nd leaf, DAH4 | tissue 2nd leaf | time DAH4 | replicate 3 -0.2581 SRR4457265 source_name 2nd leaf, DAH44 | tissue 2nd leaf | time DAH44 | replicate 2 -0.277 SRR4457263 source_name 2nd leaf, DAH36 | tissue 2nd leaf | time DAH36 | replicate 3 6 SRP356482 A plant-specific splicing factor RS33 regulates abiotic stress responses in rice loading run annotation attributes 0.1766 SRR17720828 genotype rs33 -/- | treatment 4ºC, 3hours 0.1486 SRR17720817 genotype rs33 -/- | treatment 4ºC, 6hours 0.1407 SRR17720811 genotype WT | treatment 200mM NaCl, 6hours -0.2028 SRR17720825 genotype rs33 -/- | treatment Mock, 6hours -0.2651 SRR17720826 genotype rs33 -/- | treatment Mock, 6hours -0.2748 SRR17720814 genotype WT | treatment Mock, 6hours 7 SRP083700 Characterize novel lncRNAs responding to stresses in Oryza sativa at transcriptional and post-transcriptional levels loading run annotation attributes 0.3822 SRR4098191 treatment High-salt (300 mM NaCl) 0.3617 SRR4098181 treatment Drought (air-dried) 0.2409 SRR4098188 treatment Highlight (50000 Lux) -0.2099 SRR4098183 treatment Drought (air-dried) -0.2178 SRR4098187 treatment Highlight (50000 Lux) -0.2738 SRR4098173 treatment No treatment 8 SRP041468 Oryza sativa Japonica Group Transcriptome or Gene expression loading run annotation attributes 0.2864 SRR1987333 0.2853 SRR1987329 treatment air | mutant mhz9 0.2827 SRR1987327 treatment ethylene | mutant mhz9_ET -0.2363 SRR1563138 treatment ethylene | mutant mhz3_ET -0.252 SRR1563142 treatment air | mutant mhz4 -0.2734 SRR1985042 treatment ethylene | mutant mhz4_ET 9 ERP024350 Transcriptome profiling of short-term response to chilling stress in resistant and susceptible rice seedlings loading run annotation attributes 0.3342 ERR2061597 Illumina HiSeq 3000 paired end sequencing; Transcriptome profiling of short-term response to chilling stress in resistant and susceptible rice seedlings External Id SAMEA104190773 | Submitter Id E-MTAB-5941:Thaibonnet_10h_2 | cultivar Thaibonnet | phenotype cold stress sensitive | replicate 2 | sample name E-MTAB-5941:Thaibonnet_10h_2 0.334 ERR2061596 Illumina HiSeq 3000 paired end sequencing; Transcriptome profiling of short-term response to chilling stress in resistant and susceptible rice seedlings External Id SAMEA104190772 | Submitter Id E-MTAB-5941:Thaibonnet_10h_1 | cultivar Thaibonnet | phenotype cold stress sensitive | replicate 1 | sample name E-MTAB-5941:Thaibonnet_10h_1 0.2597 ERR2061606 Illumina HiSeq 3000 paired end sequencing; Transcriptome profiling of short-term response to chilling stress in resistant and susceptible rice seedlings External Id SAMEA104190782 | Submitter Id E-MTAB-5941:Volano_10h_2 | cultivar Volano | phenotype cold stress tolerant | replicate 2 | sample name E-MTAB-5941:Volano_10h_2 -0.2311 ERR2061599 Illumina HiSeq 3000 paired end sequencing; Transcriptome profiling of short-term response to chilling stress in resistant and susceptible rice seedlings External Id SAMEA104190775 | Submitter Id E-MTAB-5941:Volano_00h_1 | cultivar Volano | phenotype cold stress tolerant | replicate 1 | sample name E-MTAB-5941:Volano_00h_1 -0.2625 ERR2061591 Illumina HiSeq 3000 paired end sequencing; Transcriptome profiling of short-term response to chilling stress in resistant and susceptible rice seedlings External Id SAMEA104190767 | Submitter Id E-MTAB-5941:Thaibonnet_00h_2 | cultivar Thaibonnet | phenotype cold stress sensitive | replicate 2 | sample name E-MTAB-5941:Thaibonnet_00h_2 -0.2725 ERR2061601 Illumina HiSeq 3000 paired end sequencing; Transcriptome profiling of short-term response to chilling stress in resistant and susceptible rice seedlings External Id SAMEA104190777 | Submitter Id E-MTAB-5941:Volano_00h_3 | cultivar Volano | phenotype cold stress tolerant | replicate 3 | sample name E-MTAB-5941:Volano_00h_3 10 SRP131107 Adaptation Versus Senescence In Rice: Early Signalling Events Play A Role In Inducing Specificity And Tolerance To Salinity loading run annotation attributes 0.1623 SRR6502091 source_name roots | agent 100 mM NaCl | cultivar Vialone Nano | tissue root 0.1543 SRR6502093 source_name roots | agent 100 mM NaCl | cultivar Vialone Nano | tissue root 0.1394 SRR6502104 source_name roots | agent 100 mM NaCl | cultivar Baldo | tissue root -0.1201 SRR6502101 source_name leaf blade and sheath | agent none | cultivar Baldo | tissue leaf -0.1438 SRR6502090 source_name leaf blade and sheath | agent none | cultivar Vialone Nano | tissue leaf -0.2582 SRR6502099 source_name leaf blade and sheath | agent 100 mM NaCl | cultivar Baldo | tissue leaf	Loading 1 SRP115210 mRNA sequencing of whole 15 d old Oryza sativa shoots loading run annotation attributes 0.4031 SRR5925635 genotype M202(Sub1) | time point midnight 0.3978 SRR5925638 genotype M202(Sub1) | time point midnight 0.3958 SRR5925637 genotype M202(Sub1) | time point midnight -0.4484 SRR5925535 genotype M202 | time point 3d_sub -0.4504 SRR5925534 genotype M202 | time point 3d_sub -0.4553 SRR5925533 genotype M202 | time point 3d_sub 2 SRP331960 The Evening Complex integrates photoperiod signals to control flowering in rice [RNA-Seq] loading run annotation attributes 0.3441 SRR15411229 photoperiod SD | timepoint ZT18 0.3265 SRR15411228 photoperiod SD | timepoint ZT18 0.3255 SRR15411224 photoperiod LD | timepoint ZT18 -0.2711 SRR15411211 photoperiod SD | timepoint ZT6 -0.2734 SRR15411207 photoperiod LD | timepoint ZT6 -0.2853 SRR15411208 photoperiod LD | timepoint ZT6 3 SRP115030 A viral protein promotes host SAMS1 activity and ethylene production for the benefit of virus infection loading run annotation attributes 0.3103 SRR5909346 source_name Oryza sativa, S11 overexpression transgene | genotype S11 overexpression transgene 0.233 SRR5909343 source_name Oryza sativa, OsSAMS1 CRISPR/Cas9 transgene | genotype OsSAMS1 CRISPR/Cas9 transgene 0.1221 SRR5909342 source_name Oryza sativa, OsSAMS1 CRISPR/Cas9 transgene | genotype OsSAMS1 CRISPR/Cas9 transgene -0.0966 SRR5909339 source_name Oryza sativa, OsSAMS1 overexpression transgene | genotype OsSAMS1 overexpression transgene -0.0992 SRR5909336 source_name Oryza sativa, wild type | genotype wild type -0.1003 SRR5909340 source_name Oryza sativa, OsSAMS1 overexpression transgene | genotype OsSAMS1 overexpression transgene 4 SRP170932 A combined small RNA and transcriptome sequencing analysis illuminates the response of resistance to brown planthopper in rice [RNA-seq] loading run annotation attributes 0.2841 SRR8247767 bph feeding status non-infested (0h) 0.2532 SRR8247768 bph feeding status non-infested (0h) 0.2371 SRR8247769 bph feeding status non-infested (0h) -0.1756 SRR8247771 bph feeding status early feeding stage (6-24h) -0.1855 SRR8247770 bph feeding status early feeding stage (6-24h) -0.1901 SRR8247772 bph feeding status early feeding stage (6-24h) 5 SRP041468 Oryza sativa Japonica Group Transcriptome or Gene expression loading run annotation attributes 0.2474 SRR1563137 treatment ethylene | mutant mhz3_ET 0.19 SRR1563138 treatment ethylene | mutant mhz3_ET 0.1771 SRR1264023 -0.2282 SRR1985035 treatment air | mutant mhz4 -0.248 SRR1985021 -0.275 SRR1985041 treatment ethylene | mutant mhz4_ET 6 SRP357677 Transcriptome differences between wild-type and ERF096 transgenic rice before and after cold treatment loading run annotation attributes 0.246 SRR17843171 source_name ERF096-RNAi | genotype ERF096-RNAi 0.2306 SRR17843173 source_name ERF096-RNAi | genotype ERF096-RNAi 0.22 SRR17843172 source_name ERF096-RNAi | genotype ERF096-RNAi -0.198 SRR17843165 source_name ERF096-OX | genotype ERF096-OX -0.199 SRR17843164 source_name ERF096-RNAi | genotype ERF096-RNAi -0.2049 SRR17843166 source_name ERF096-OX | genotype ERF096-OX 7 SRP167327 A novel positive feed-back loop mediated by the membrane-associated transcription factor NTL3 is important for heat stress tolerance in rice loading run annotation attributes 0.2054 SRR8140283 genotype NTL3-/- 0.2018 SRR8140284 genotype NTL3-/- 0.1307 SRR8140271 genotype wild type -0.1309 SRR8140278 genotype wild type -0.1338 SRR8140277 genotype wild type -0.1341 SRR8140287 genotype NTL3-/- 8 SRP151597 Chromosomal deletions drove parallel domestication of plant architecture in Asian and African rice loading run annotation attributes 0.1986 SRR7450911 genotype control plants of ZnF5 and ZnF7 transgenic lines 0.1873 SRR7450910 genotype control plants of ZnF5 and ZnF7 transgenic lines 0.1852 SRR7450912 genotype control plants of ZnF5 and ZnF7 transgenic lines -0.249 SRR7450918 genotype control plants of ZnF8 transgenic lines -0.2543 SRR7450917 genotype control plants of ZnF8 transgenic lines -0.3179 SRR7450916 genotype control plants of ZnF8 transgenic lines 9 SRP093884 PREMATURE INTERNODE ELONGATION 1 coordinates internode elongation in response to florigenic signals at the shoot apex of rice loading run annotation attributes 0.184 SRR5052718 cultivar Nipponbare | days after shift 8 | sample number used in data processing 15,16,17 (data merged for analysis) 0.1815 SRR5052737 cultivar Taichung 65 | days after shift 12 | sample number used in data processing 37,38,39 (data merged for analysis) 0.1527 SRR5052716 cultivar Nipponbare | days after shift 8 | sample number used in data processing 15,16,17 (data merged for analysis) -0.1128 SRR5052734 cultivar Taichung 65 | days after shift 12 | sample number used in data processing 36 -0.1221 SRR5052713 cultivar Nipponbare | days after shift 4 | sample number used in data processing 10 -0.1248 SRR5052733 cultivar Taichung 65 | days after shift 8 | sample number used in data processing 35 10 ERP024350 Transcriptome profiling of short-term response to chilling stress in resistant and susceptible rice seedlings loading run annotation attributes 0.1833 ERR2061599 Illumina HiSeq 3000 paired end sequencing; Transcriptome profiling of short-term response to chilling stress in resistant and susceptible rice seedlings External Id SAMEA104190775 | Submitter Id E-MTAB-5941:Volano_00h_1 | cultivar Volano | phenotype cold stress tolerant | replicate 1 | sample name E-MTAB-5941:Volano_00h_1 0.1819 ERR2061591 Illumina HiSeq 3000 paired end sequencing; Transcriptome profiling of short-term response to chilling stress in resistant and susceptible rice seedlings External Id SAMEA104190767 | Submitter Id E-MTAB-5941:Thaibonnet_00h_2 | cultivar Thaibonnet | phenotype cold stress sensitive | replicate 2 | sample name E-MTAB-5941:Thaibonnet_00h_2 0.1696 ERR2061601 Illumina HiSeq 3000 paired end sequencing; Transcriptome profiling of short-term response to chilling stress in resistant and susceptible rice seedlings External Id SAMEA104190777 | Submitter Id E-MTAB-5941:Volano_00h_3 | cultivar Volano | phenotype cold stress tolerant | replicate 3 | sample name E-MTAB-5941:Volano_00h_3 -0.1048 ERR2061597 Illumina HiSeq 3000 paired end sequencing; Transcriptome profiling of short-term response to chilling stress in resistant and susceptible rice seedlings External Id SAMEA104190773 | Submitter Id E-MTAB-5941:Thaibonnet_10h_2 | cultivar Thaibonnet | phenotype cold stress sensitive | replicate 2 | sample name E-MTAB-5941:Thaibonnet_10h_2 -0.1124 ERR2061598 Illumina HiSeq 3000 paired end sequencing; Transcriptome profiling of short-term response to chilling stress in resistant and susceptible rice seedlings External Id SAMEA104190774 | Submitter Id E-MTAB-5941:Thaibonnet_10h_3 | cultivar Thaibonnet | phenotype cold stress sensitive | replicate 3 | sample name E-MTAB-5941:Thaibonnet_10h_3 -0.1268 ERR2061607 Illumina HiSeq 3000 paired end sequencing; Transcriptome profiling of short-term response to chilling stress in resistant and susceptible rice seedlings External Id SAMEA104190783 | Submitter Id E-MTAB-5941:Volano_10h_3 | cultivar Volano | phenotype cold stress tolerant | replicate 3 | sample name E-MTAB-5941:Volano_10h_3	Loading 1 SRP356482 A plant-specific splicing factor RS33 regulates abiotic stress responses in rice loading run annotation attributes 0.3999 SRR17720819 genotype rs33 -/- | treatment 200mM NaCl, 6hours 0.3863 SRR17720820 genotype rs33 -/- | treatment 200mM NaCl, 6hours 0.2315 SRR17720812 genotype WT | treatment 200mM NaCl, 6hours -0.313 SRR17720815 genotype WT | treatment 4ºC, 3hours -0.3152 SRR17720810 genotype WT | treatment 4ºC, 6hours -0.3501 SRR17720809 genotype WT | treatment 4ºC, 6hours 2 SRP115210 mRNA sequencing of whole 15 d old Oryza sativa shoots loading run annotation attributes 0.3573 SRR5925560 time point control 0.3531 SRR5925556 time point control 0.35 SRR5925557 time point control -0.3192 SRR5925442 time point dawn -0.323 SRR5925443 time point dawn -0.3234 SRR5925445 time point dawn 3 SRP357677 Transcriptome differences between wild-type and ERF096 transgenic rice before and after cold treatment loading run annotation attributes 0.3396 SRR17843179 source_name wild type | genotype wild type 0.2817 SRR17843177 source_name wild type | genotype wild type 0.1965 SRR17843174 source_name ERF096-OX | genotype ERF096-OX -0.1907 SRR17843162 source_name ERF096-RNAi | genotype ERF096-RNAi -0.2227 SRR17843170 source_name wild type | genotype wild type -0.2267 SRR17843169 source_name wild type | genotype wild type 4 SRP327364 Differentiation of the high night temperature response in leaf segments of rice cultivars with contrasting tolerance loading run annotation attributes 0.326 SRR15060455 cultivar Nipponbare | tissue Sheath | hnt-sensitivity tolerant 0.3237 SRR15060454 cultivar Nipponbare | tissue Sheath | hnt-sensitivity tolerant 0.3227 SRR15060456 cultivar Nipponbare | tissue Sheath | hnt-sensitivity tolerant -0.2971 SRR15060411 cultivar CT9993-5-10-1M | tissue Base | hnt-sensitivity sensitive -0.2985 SRR15060412 cultivar CT9993-5-10-1M | tissue Base | hnt-sensitivity sensitive -0.3032 SRR15060409 cultivar CT9993-5-10-1M | tissue Base | hnt-sensitivity sensitive 5 ERP024350 Transcriptome profiling of short-term response to chilling stress in resistant and susceptible rice seedlings loading run annotation attributes 0.3208 ERR2061599 Illumina HiSeq 3000 paired end sequencing; Transcriptome profiling of short-term response to chilling stress in resistant and susceptible rice seedlings External Id SAMEA104190775 | Submitter Id E-MTAB-5941:Volano_00h_1 | cultivar Volano | phenotype cold stress tolerant | replicate 1 | sample name E-MTAB-5941:Volano_00h_1 0.2634 ERR2061601 Illumina HiSeq 3000 paired end sequencing; Transcriptome profiling of short-term response to chilling stress in resistant and susceptible rice seedlings External Id SAMEA104190777 | Submitter Id E-MTAB-5941:Volano_00h_3 | cultivar Volano | phenotype cold stress tolerant | replicate 3 | sample name E-MTAB-5941:Volano_00h_3 0.2633 ERR2061600 Illumina HiSeq 3000 paired end sequencing; Transcriptome profiling of short-term response to chilling stress in resistant and susceptible rice seedlings External Id SAMEA104190776 | Submitter Id E-MTAB-5941:Volano_00h_2 | cultivar Volano | phenotype cold stress tolerant | replicate 2 | sample name E-MTAB-5941:Volano_00h_2 -0.2169 ERR2061597 Illumina HiSeq 3000 paired end sequencing; Transcriptome profiling of short-term response to chilling stress in resistant and susceptible rice seedlings External Id SAMEA104190773 | Submitter Id E-MTAB-5941:Thaibonnet_10h_2 | cultivar Thaibonnet | phenotype cold stress sensitive | replicate 2 | sample name E-MTAB-5941:Thaibonnet_10h_2 -0.2468 ERR2061596 Illumina HiSeq 3000 paired end sequencing; Transcriptome profiling of short-term response to chilling stress in resistant and susceptible rice seedlings External Id SAMEA104190772 | Submitter Id E-MTAB-5941:Thaibonnet_10h_1 | cultivar Thaibonnet | phenotype cold stress sensitive | replicate 1 | sample name E-MTAB-5941:Thaibonnet_10h_1 -0.2766 ERR2061598 Illumina HiSeq 3000 paired end sequencing; Transcriptome profiling of short-term response to chilling stress in resistant and susceptible rice seedlings External Id SAMEA104190774 | Submitter Id E-MTAB-5941:Thaibonnet_10h_3 | cultivar Thaibonnet | phenotype cold stress sensitive | replicate 3 | sample name E-MTAB-5941:Thaibonnet_10h_3 6 SRP220388 Oryza sativa Transcriptome or Gene expression loading run annotation attributes 0.3042 SRR10058420 tissue NIP_CK_Last node 0.2233 SRR10058417 tissue NIP_Si_Last node 0.1791 SRR10058414 tissue NIP_Cd_Last node -0.1709 SRR10058415 tissue NIP_Cd_Flag leaf -0.1971 SRR10058421 tissue NIP_CK_Flag leaf -0.2256 SRR10058411 tissue NIP_Cd+Si_Flag leaf 7 SRP331960 The Evening Complex integrates photoperiod signals to control flowering in rice [RNA-Seq] loading run annotation attributes 0.3014 SRR15411194 photoperiod LD | timepoint ZT18 | genotype OsphyB-/- 0.2962 SRR15411196 photoperiod LD | timepoint ZT18 | genotype OsphyB-/- 0.2873 SRR15411195 photoperiod LD | timepoint ZT18 | genotype OsphyB-/- -0.2535 SRR15411228 photoperiod SD | timepoint ZT18 | genotype WT (Rice Japonica cv. Nipponbare) -0.2584 SRR15411232 photoperiod LD | timepoint ZT24 | genotype WT (Rice Japonica cv. Nipponbare) -0.2754 SRR15411204 photoperiod SD | timepoint ZT2 | genotype WT (Rice Japonica cv. Nipponbare) 8 SRP092175 Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice loading run annotation attributes 0.2727 SRR4457262 source_name 2nd leaf, DAH36 | tissue 2nd leaf | time DAH36 | replicate 2 0.2239 SRR4457261 source_name 2nd leaf, DAH36 | tissue 2nd leaf | time DAH36 | replicate 1 0.1836 SRR4457245 source_name Flag leaf, DAH36 | tissue Flag leaf | time DAH36 | replicate 3 -0.1413 SRR4457242 source_name Flag leaf, DAH28 | tissue Flag leaf | time DAH28 | replicate 3 -0.1455 SRR4457241 source_name Flag leaf, DAH28 | tissue Flag leaf | time DAH28 | replicate 2 -0.1762 SRR4457237 source_name Flag leaf, DAH20 | tissue Flag leaf | time DAH20 | replicate 1 9 SRP106796 Co-overexpression of the constitutively active form of OsbZIP46 and ABA-activated protein kinase SAPK6 improves drought and temperature stress resistance in rice loading run annotation attributes 0.2677 SRR5526308 genotype SAPK6 Overexpressing line -19 | treatment Drought 0.2572 SRR5526310 genotype SAPK6 Overexpressing line -33 | treatment Drought 0.255 SRR5526314 genotype OsbZIP46CA1 and SAPK6 Co-overexpressing line -138 | treatment Drought -0.2433 SRR5526309 genotype SAPK6 Overexpressing line -19 | treatment Normal -0.2521 SRR5526305 genotype OsbZIP46CA1 Overexpressing line -4 | treatment Normal -0.2639 SRR5526307 genotype OsbZIP46CA1 Overexpressing line -19 | treatment Normal 10 DRP001141 Gene expression profiling of the early cadmium response includes abiotic stress signaling pathway in rice loading run annotation attributes 0.2419 DRR013402 sample_name DRS012061 | sample comment Cd_24hr_shoot 0.2237 DRR013404 sample_name DRS012061 | sample comment Cd_24hr_shoot 0.2208 DRR013403 sample_name DRS012061 | sample comment Cd_24hr_shoot -0.1008 DRR013392 sample_name DRS012057 | sample comment Cd_1hr_root -0.1087 DRR013390 sample_name DRS012057 | sample comment Cd_1hr_root -0.1091 DRR013391 sample_name DRS012057 | sample comment Cd_1hr_root	Loading 1 SRP167327 A novel positive feed-back loop mediated by the membrane-associated transcription factor NTL3 is important for heat stress tolerance in rice loading run annotation attributes 0.3808 SRR8140273 genotype wild type 0.3804 SRR8140274 genotype wild type 0.2865 SRR8140285 genotype NTL3-/- -0.4072 SRR8140284 genotype NTL3-/- -0.4095 SRR8140280 genotype NTL3-/- -0.4099 SRR8140279 genotype NTL3-/- 2 SRP331960 The Evening Complex integrates photoperiod signals to control flowering in rice [RNA-Seq] loading run annotation attributes 0.3073 SRR15411233 photoperiod SD | timepoint ZT24 | genotype WT (Rice Japonica cv. Nipponbare) 0.2758 SRR15411234 photoperiod SD | timepoint ZT24 | genotype WT (Rice Japonica cv. Nipponbare) 0.2646 SRR15411204 photoperiod SD | timepoint ZT2 | genotype WT (Rice Japonica cv. Nipponbare) -0.2979 SRR15411172 photoperiod LD | timepoint ZT14 | genotype Oself3-1 -/- Oself3-2 -/- -0.3082 SRR15411171 photoperiod LD | timepoint ZT14 | genotype Oself3-1 -/- Oself3-2 -/- -0.3288 SRR15411219 photoperiod LD | timepoint ZT14 | genotype WT (Rice Japonica cv. Nipponbare) 3 SRP357677 Transcriptome differences between wild-type and ERF096 transgenic rice before and after cold treatment loading run annotation attributes 0.2921 SRR17843175 source_name ERF096-OX | genotype ERF096-OX 0.2587 SRR17843174 source_name ERF096-OX | genotype ERF096-OX 0.2233 SRR17843172 source_name ERF096-RNAi | genotype ERF096-RNAi -0.2225 SRR17843166 source_name ERF096-OX | genotype ERF096-OX -0.2674 SRR17843164 source_name ERF096-RNAi | genotype ERF096-RNAi -0.323 SRR17843163 source_name ERF096-RNAi | genotype ERF096-RNAi 4 SRP083700 Characterize novel lncRNAs responding to stresses in Oryza sativa at transcriptional and post-transcriptional levels loading run annotation attributes 0.2674 SRR4098192 treatment High-salt (300 mM NaCl) 0.2514 SRR4098183 treatment Drought (air-dried) 0.2058 SRR4098182 treatment Drought (air-dried) -0.1936 SRR4098191 treatment High-salt (300 mM NaCl) -0.2988 SRR4098188 treatment Highlight (50000 Lux) -0.3169 SRR4098174 treatment No treatment 5 SRP229366 Next Generation Sequencing Facilitates Quantitative Analysis of ZH11 and ONAC127/ONAC129 transgenic plants Transcriptomes loading run annotation attributes 0.2131 SRR10423447 condition Normal cultivation condition | genotype wildtype 0.1979 SRR10423445 condition Normal cultivation condition | genotype wildtype 0.1872 SRR10423424 condition Normal cultivation condition | genotype ONAC127 over expressed -0.2807 SRR10423433 condition Natural heat stress | genotype ONAC129 mutant -0.2831 SRR10423434 condition Natural heat stress | genotype ONAC129 mutant -0.3158 SRR10423435 condition Natural heat stress | genotype ONAC129 mutant 6 SRP170932 A combined small RNA and transcriptome sequencing analysis illuminates the response of resistance to brown planthopper in rice [RNA-seq] loading run annotation attributes 0.1059 SRR8247768 source_name BPH6-transgenic line | cultivar BPH6-transgenic line | bph feeding status non-infested (0h) 0.0991 SRR8247782 source_name Nipponbare | cultivar Nipponbare | bph feeding status late feeding stage (48-72h) 0.0936 SRR8247767 source_name BPH6-transgenic line | cultivar BPH6-transgenic line | bph feeding status non-infested (0h) -0.1852 SRR8247778 source_name Nipponbare | cultivar Nipponbare | bph feeding status non-infested (0h) -0.2064 SRR8247777 source_name Nipponbare | cultivar Nipponbare | bph feeding status non-infested (0h) -0.2836 SRR8247776 source_name Nipponbare | cultivar Nipponbare | bph feeding status non-infested (0h) 7 SRP327364 Differentiation of the high night temperature response in leaf segments of rice cultivars with contrasting tolerance loading run annotation attributes 0.1993 SRR15060315 cultivar CT9993-5-10-1M | tissue Tip | hnt-sensitivity sensitive | treatment Control 0.198 SRR15060330 cultivar CT9993-5-10-1M | tissue Middle | hnt-sensitivity sensitive | treatment Control 0.1959 SRR15060316 cultivar CT9993-5-10-1M | tissue Tip | hnt-sensitivity sensitive | treatment Control -0.2211 SRR15060374 cultivar Nipponbare | tissue Sheath | hnt-sensitivity tolerant | treatment Control -0.2594 SRR15060433 cultivar Nipponbare | tissue Base | hnt-sensitivity tolerant | treatment HNT -0.2705 SRR15060373 cultivar Nipponbare | tissue Sheath | hnt-sensitivity tolerant | treatment Control 8 SRP151597 Chromosomal deletions drove parallel domestication of plant architecture in Asian and African rice loading run annotation attributes 0.2757 SRR7450898 genotype transgenic plants of PROG1 | phenotype prostrate growth 0.2374 SRR7450900 genotype transgenic plants of PROG1 | phenotype prostrate growth 0.2277 SRR7450899 genotype transgenic plants of PROG1 | phenotype prostrate growth -0.2348 SRR7450916 genotype control plants of ZnF8 transgenic lines | phenotype erect growth -0.2681 SRR7450918 genotype control plants of ZnF8 transgenic lines | phenotype erect growth -0.269 SRR7450917 genotype control plants of ZnF8 transgenic lines | phenotype erect growth 9 SRP356482 A plant-specific splicing factor RS33 regulates abiotic stress responses in rice loading run annotation attributes 0.2506 SRR17720811 genotype WT | treatment 200mM NaCl, 6hours 0.1811 SRR17720829 genotype rs33 -/- | treatment 200mM NaCl, 3hours 0.1723 SRR17720820 genotype rs33 -/- | treatment 200mM NaCl, 6hours -0.1738 SRR17720816 genotype WT | treatment 4ºC, 3hours -0.183 SRR17720828 genotype rs33 -/- | treatment 4ºC, 3hours -0.2549 SRR17720810 genotype WT | treatment 4ºC, 6hours 10 SRP254459 Next Generation Sequencing Facilitates Quantitative Analysis of bHLH6 OV, spx4, and wild-type Transcriptomes loading run annotation attributes 0.099 SRR11444589 source_name Root | tissue root | age 21-day-old seedlings grown in 200 μM Pi | genotype spx4 T-DNA 0.0845 SRR11444590 source_name Root | tissue root | age 21-day-old seedlings grown in 200 μM Pi | genotype spx4 T-DNA 0.0774 SRR11444597 source_name Shoot | tissue shoot | age 21-day-old seedlings grown in 200 μM Pi | genotype wild type -0.2104 SRR11444604 source_name Shoot | tissue shoot | age 7-day-old seedlings treated with 10 μM Pi for 2 weeks | genotype wild type -0.235 SRR11444606 source_name Shoot | tissue shoot | age 7-day-old seedlings treated with 10 μM Pi for 2 weeks | genotype wild type -0.2409 SRR11444605 source_name Shoot | tissue shoot | age 7-day-old seedlings treated with 10 μM Pi for 2 weeks | genotype wild type
Upper 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC9271118 defensin Tk-AMP-D1.1-like 9271118 0.22 LOC107277927 fatty acid desaturase 4, chloroplastic 107277927 Os08g0187900 0.01 LOC4334321 protein app1 4334321 Os03g0782200 -0.14 LOC4341602 calphotin 4341602 Os06g0635700 -0.19 LOC107281261 aspartyl protease family protein At5g10770 107281261 -0.31 LOC112937678 U1 spliceosomal RNA 112937678 -0.45 LOC9270357 uncharacterized LOC9270357 9270357 Os05g0110200 -0.49 LOC4341194 abscisic acid receptor PYL3-like 4341194 Os06g0528300 -0.66 LOC4338044 uncharacterized LOC4338044 4338044 Os05g0196700 -0.66 LOC107276852 mavicyanin 107276852 Os03g0791366 -0.66 LOC4328851 glutelin type-B 5-like 4328851 Os02g0242600 -0.72 LOC4323972 uncharacterized LOC4323972 4323972 Os01g0517800 -0.76 LOC4350574 NAC transcription factor 25 4350574 Os11g0512000 -0.79 LOC4338444 prolamin PPROL 14E-like 4338444 Os05g0332000 -0.81 LOC9268631 uncharacterized LOC9268631 9268631 Os12g0506100 -0.83 LOC9266935 NAC transcription factor NAM-1 9266935 Os11g0512100 -0.90 LOC107275685 proline-rich receptor-like protein kinase PERK2 107275685 Os11g0631400 -0.90 LOC9272117 defensin-like protein 1 9272117 Os02g0172300 -0.90 LOC107276393 uncharacterized LOC107276393 107276393 Os10g0404000 -0.90 LOC9271122 prolamin PPROL 14E-like 9271122 Os05g0331532 -0.92 LOC4338443 prolamin PPROL 14E-like 4338443 Os05g0331800 -0.99 LOC4348075 uncharacterized LOC4348075 4348075 Os10g0139300 -1.08 LOC4348238 uncharacterized LOC4348238 4348238 Os10g0191900 -1.12 LOC4349964 uncharacterized LOC4349964 4349964 Os11g0185100 -1.16 LOC107280590 bile salt-activated lipase-like 107280590 -1.17 LOC4341879 COBRA-like protein 10 4341879 Os06g0685100 -1.24 LOC107281014 fibroin heavy chain 107281014 Os01g0635600 -1.24 LOC4346425 uncharacterized LOC4346425 4346425 Os09g0122000 -1.26 LOC4335632 uncharacterized LOC4335632 4335632 Os04g0380800 -1.28 LOC9268751 ethylene-responsive transcription factor ABR1 9268751 -1.32 LOC4352185 TPD1 protein homolog 1 4352185 Os12g0465100 -1.34 LOC4350180 21.9 kDa heat shock protein-like 4350180 OSNPB_110244200 -1.39 LOC4350789 antimicrobial peptides 4350789 Os11g0582400 -1.39 LOC4339956 uncharacterized LOC4339956 4339956 Os06g0124400 -1.45 LOC4351129 putative pectinesterase 63 4351129 Os11g0683700 -1.50 LOC4328880 uncharacterized LOC4328880 4328880 Os02g0249500 -1.52 LOC4350100 putative auxin-responsive protein IAA29 4350100 OSNPB_110221300 -1.53 LOC4336040 uncharacterized LOC4336040 4336040 Os04g0458800 -1.54 LOC4346728 oleosin 16 kDa-like 4346728 Os09g0324000 -1.58 LOC4328884 glutelin type-B 1 4328884 Os02g0249900 -1.60 LOC107275809 putative cyclin-dependent serine/threonine-protein kinase DDB_G0272797/DDB_G0274007 107275809 Os04g0393100 -1.61 LOC4328876 glutelin type-B 2-like 4328876 Os02g0248800 -1.62 LOC4324828 transcription factor MYB73 4324828 Os01g0855400 -1.65 LOC4336801 putative invertase inhibitor 4336801 Os04g0587100 -1.65 LOC107281485 uncharacterized LOC107281485 107281485 -1.74 LOC107276567 uncharacterized LOC107276567 107276567 Os02g0548100 -1.75 LOC112937256 5S ribosomal RNA 112937256 -1.77 LOC107278211 zinc finger protein ZAT7 107278211 Os05g0460900 -1.79 LOC112937268 5S ribosomal RNA 112937268 -1.80 LOC4328969 glutelin type-B 4-like 4328969 OSNPB_020268300 -1.80 LOC4340105 pectate lyase 4340105 -1.83 LOC112938970 uncharacterized LOC112938970 112938970 -1.84 LOC4339772 bidirectional sugar transporter SWEET5-like 4339772 OSNPB_050588500 -1.84 LOC4348180 chalcone synthase 2 4348180 Os10g0167900 -1.85 LOC107275634 uncharacterized LOC107275634 107275634 Os02g0792500 -1.85 LOC4329079 cell differentiation protein rcd1 4329079 Os02g0296400 -1.87 LOC4324888 MADS-box transcription factor 21-like 4324888 OSNPB_010886200 -1.88 LOC4342865 ethylene receptor 4-like 4342865 OSNPB_070259100 -1.92 LOC4324337 uncharacterized LOC4324337 4324337 Os01g0917100 -1.96 LOC4328883 glutelin type-B 1 4328883 Os02g0249800 -1.99 LOC4339141 L-ascorbate oxidase homolog 4339141 Os05g0485800 -2.03 LOC4329379 uncharacterized LOC4329379 4329379 Os02g0487300 -2.07 LOC4347383 ATP-dependent 6-phosphofructokinase 2 4347383 Os09g0479800 -2.08 LOC4344755 zingiberene synthase 4344755 Os08g0168000 -2.10 LOC4339760 uncharacterized LOC4339760 4339760 Os05g0586700 -2.10 LOC4340099 pectate lyase 4340099 Os06g0144200 -2.11 LOC9272296 uncharacterized LOC9272296 9272296 -2.13 LOC4335005 peroxidase 5 4335005 Os04g0134800 -2.17 LOC107277553 transcription factor bHLH95 107277553 Os02g0547600 -2.31 LOC4351053 pollen-specific leucine-rich repeat extensin-like protein 3 4351053 Os11g0657400 -2.31 LOC4338359 uncharacterized LOC4338359 4338359 Os05g0304800 -2.32 LOC4325365 GDSL esterase/lipase At1g28600 4325365 Os01g0651000 -2.47 LOC4326289 uncharacterized LOC4326289 4326289 Os01g0356800 -2.47 LOC4344635 beta-sesquiphellandrene synthase 4344635 Os08g0139700 -2.50 LOC4327813 transcription factor MYB44 4327813 Os01g0977300 -2.53 LOC4350576 uncharacterized LOC4350576 4350576 Os11g0512800 -2.53 LOC9268556 uncharacterized LOC9268556 9268556 -2.61 LOC4348073 uncharacterized LOC4348073 4348073 Os10g0138300 -2.64 LOC9272627 uncharacterized LOC9272627 9272627 -2.66 LOC4344574 glutelin type-A 1-like 4344574 Os08g0127900 -2.67 LOC9266991 uncharacterized LOC9266991 9266991 -2.69 LOC4328968 glutelin type-B 5-like 4328968 OSNPB_020268100 -2.82 LOC4333398 uncharacterized LOC4333398 4333398 Os03g0601500 -2.84 LOC9268315 two-component response regulator ORR29-like 9268315 Os04g0348600 -2.88 LOC4341193 abscisic acid receptor PYL3-like 4341193 Os06g0527800 -2.90 LOC4324641 endoglucanase 1-like 4324641 OSNPB_010219600 -2.94 LOC4329048 BURP domain-containing protein 4-like 4329048 OSNPB_020288600 -2.95 LOC4337055 polyphenol oxidase I, chloroplastic 4337055 Os04g0624500 -3.00 LOC4327128 zinc finger CCCH domain-containing protein 1-like 4327128 OSNPB_010174600 -3.00 LOC9268077 uncharacterized LOC9268077 9268077 Os09g0331900 -3.04 LOC9268078 uncharacterized LOC9268078 9268078 -3.05 LOC9271003 uncharacterized LOC9271003 9271003 Os01g0244400 -3.06 LOC9272438 uncharacterized LOC9272438 9272438 Os07g0296900 -3.07 LOC4333790 indole-3-acetate beta-glucosyltransferase 4333790 Os03g0693600 -3.07 LOC4342738 alpha-amylase/trypsin inhibitor 4342738 Os07g0222000 -3.08 LOC107277693 uncharacterized LOC107277693 107277693 Os09g0408300 -3.10 LOC9268811 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 8 9268811 Os09g0427800 -3.12 LOC107275902 transcription factor SRM1 107275902 Os06g0173800 -3.17 LOC4346890 succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like 4346890 OSNPB_090370300 -3.23 LOC107279158 uncharacterized LOC107279158 107279158 -3.24	Upper 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC4351966 ribulose bisphosphate carboxylase small chain, chloroplastic-like 4351966 OSNPB_120274700 56.03 LOC4328603 lipoxygenase 2.3, chloroplastic 4328603 Os02g0194700 54.38 LOC4347708 ribonuclease 3 4347708 Os09g0537700 53.43 LOC4342381 uncharacterized oxidoreductase At1g06690, chloroplastic 4342381 Os07g0142900 52.72 LOC9268397 cinnamoyl-CoA reductase 1 9268397 Os09g0491820 52.49 LOC4347709 ribonuclease 1 4347709 Os09g0538000 51.61 LOC4349605 non-specific lipid-transfer protein 1 4349605 Os11g0116000 51.14 LOC4351319 non-specific lipid-transfer protein 1 4351319 Os12g0115300 50.61 LOC4343014 protein CDI 4343014 Os07g0413800 49.48 LOC4335407 horcolin 4335407 Os04g0295400 49.44 LOC4352083 chloroplast stem-loop binding protein of 41 kDa b, chloroplastic 4352083 Os12g0420200 49.05 LOC4328000 ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic-like 4328000 Os02g0103800 48.87 LOC4351224 ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like 4351224 OSNPB_110707000 48.79 LOC4348282 heavy metal-associated isoprenylated plant protein 7 4348282 Os10g0209700 48.63 LOC4350043 probable leucine-rich repeat receptor-like protein kinase At1g35710 4350043 Os11g0208900 48.60 LOC4344899 photosystem II 10 kDa polypeptide, chloroplastic 4344899 Os08g0200300 48.56 LOC4351320 probable non-specific lipid-transfer protein 3 4351320 Os12g0115500 48.23 LOC4330625 protein CURVATURE THYLAKOID 1A, chloroplastic 4330625 Os02g0731600 48.19 LOC4324318 uncharacterized LOC4324318 4324318 Os01g0912700 47.98 RBCS1 ribulose bisphosphate carboxylase small chain A, chloroplastic-like 4352014 OSNPB_120291100 47.76 LOC4335227 sedoheptulose-1,7-bisphosphatase, chloroplastic 4335227 Os04g0234600 47.74 LOC4334753 probable thiol methyltransferase 2 4334753 Os03g0843800 47.44 LOC4336044 glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 4336044 Os04g0459500 47.39 LOC4333359 chlorophyll a-b binding protein, chloroplastic-like 4333359 OSNPB_030592500 47.11 LOC4325998 Bowman-Birk type bran trypsin inhibitor 4325998 Os01g0123900 46.84 LOC4326162 transcription factor bHLH167 4326162 Os01g0108400 46.76 LOC4324165 anthocyanidin 5,3-O-glucosyltransferase 4324165 Os01g0734600 46.54 LOC4328623 chlorophyll a-b binding protein 8, chloroplastic 4328623 Os02g0197600 46.46 LOC4345663 chlorophyll a-b binding protein P4, chloroplastic 4345663 Os08g0435900 46.32 LOC4344439 ferredoxin-1, chloroplastic-like 4344439 OSNPB_080104600 46.09 LOC4335374 flowering-promoting factor 1-like protein 4 4335374 OSNPB_040282400 46.05 LOC4351694 photosystem I reaction center subunit N, chloroplastic 4351694 Os12g0189400 45.76 LOC4344832 homeobox-leucine zipper protein ROC1-like 4344832 OSNPB_080187500 45.57 LOC4334321 protein app1 4334321 Os03g0782200 45.55 LOC4352016 ribulose bisphosphate carboxylase small chain A, chloroplastic-like 4352016 Os12g0291400 45.33 LOC4332364 fructose-1,6-bisphosphatase, chloroplastic-like 4332364 OSNPB_030267300 45.27 LOC4347286 tuliposide A-converting enzyme 1, chloroplastic 4347286 Os09g0460500 45.26 LOC4351318 non-specific lipid-transfer protein 1-like 4351318 OSNPB_120115100 45.20 LOC4349203 probable glutathione S-transferase GSTU6 4349203 Os10g0530500 45.19 LOC4348690 probable cinnamyl alcohol dehydrogenase 3 4348690 OSNPB_100430200 45.19 LOC4342370 oxygen-evolving enhancer protein 2, chloroplastic 4342370 Os07g0141400 45.10 LOC4343583 chlorophyll a-b binding protein CP29.1, chloroplastic 4343583 Os07g0558400 45.10 LOC4344507 beta-carotene isomerase D27, chloroplastic-like 4344507 Os08g0114100 45.09 LOC9269218 uncharacterized LOC9269218 9269218 Os07g0673550 45.03 LOC4337261 farnesyl pyrophosphate synthase 2 4337261 Os04g0657300 44.96 LOC4344635 beta-sesquiphellandrene synthase 4344635 Os08g0139700 44.95 LOC4340704 protein CURVATURE THYLAKOID 1A, chloroplastic 4340704 Os06g0264800 44.92 LOC107275307 non-specific lipid-transfer protein 1 107275307 Os11g0116200 44.79 LOC4343986 cysteine-rich receptor-like protein kinase 6 4343986 Os07g0628700 44.73 LOC4336964 pEARLI1-like lipid transfer protein 3 4336964 44.61 LOC4329983 receptor kinase-like protein Xa21 4329983 Os02g0615800 44.55 LOC4346803 chlorophyll a-b binding protein 1, chloroplastic-like 4346803 OSNPB_090346500 44.40 LOC4329158 ABC transporter G family member 40 4329158 Os02g0318600 44.36 LOC4325791 calvin cycle protein CP12-1, chloroplastic 4325791 Os01g0303000 44.32 LOC4343987 cysteine-rich receptor-like protein kinase 6 4343987 Os07g0628900 44.32 LOC4328040 probable inactive linolenate hydroperoxide lyase 4328040 Os02g0110200 44.18 LOC4352085 photosystem I reaction center subunit XI, chloroplastic 4352085 Os12g0420400 44.18 LOC4340892 chlorophyll a-b binding protein 1B-21, chloroplastic 4340892 Os06g0320500 44.09 LOC4339833 plastocyanin, chloroplastic-like 4339833 OSNPB_060101600 44.08 LOC4343015 malonyl-CoA:anthocyanidin 5-O-glucoside-6''-O-malonyltransferase 4343015 Os07g0414000 44.07 LOC4324479 oxygen-evolving enhancer protein 1, chloroplastic 4324479 Os01g0501800 44.05 LOC4336263 chitinase 4-like 4336263 Os04g0493600 44.00 LOC107278119 uncharacterized LOC107278119 107278119 43.77 LOC4349897 fructose-bisphosphate aldolase, chloroplastic-like 4349897 OSNPB_110171300 43.73 LOC9268392 uncharacterized LOC9268392 9268392 Os12g0515800 43.68 LOC9267894 non-specific lipid-transfer protein 2 9267894 Os11g0115350 43.66 LOC4338729 UPF0603 protein Os05g0401100, chloroplastic-like 4338729 OSNPB_050401100 43.53 LOC4337074 homeobox-leucine zipper protein ROC2-like 4337074 OSNPB_040627000 43.53 LOC4324599 chlorophyll a-b binding protein 2, chloroplastic-like 4324599 OSNPB_010600900 43.48 LOC4344630 uncharacterized LOC4344630 4344630 Os08g0138900 43.48 LOC4339593 photosystem I reaction center subunit VI, chloroplastic-like 4339593 OSNPB_050560000 43.41 LOC4331275 epimerase family protein SDR39U1 homolog, chloroplastic 4331275 Os02g0834700 43.28 LOC4343604 chlorophyll a-b binding protein of LHCII type III, chloroplastic 4343604 Os07g0562700 43.28 LOC4331128 uncharacterized LOC4331128 4331128 Os02g0815300 43.20 LOC4350044 uncharacterized LOC4350044 4350044 43.19 LOC4330413 phosphoribulokinase, chloroplastic 4330413 Os02g0698000 43.16 LOC4352535 uncharacterized LOC4352535 4352535 Os12g0563600 43.14 LOC4340874 uncharacterized LOC4340874 4340874 Os06g0316000 43.11 LOC4349896 BURP domain-containing protein 17-like 4349896 OSNPB_110170900 42.98 LOC4335799 photosystem I subunit O 4335799 Os04g0414700 42.97 LOC4332745 photosystem II repair protein PSB27-H1, chloroplastic 4332745 Os03g0333400 42.95 LOC4329823 lecithin-cholesterol acyltransferase-like 1 4329823 Os02g0589700 42.86 LOC4326363 probable transcription factor GLK2 4326363 OSNPB_010239000 42.83 LOC4327981 glycerate dehydrogenase 4327981 Os02g0101500 42.83 LOC4346604 rhodanese-like domain-containing protein 9, chloroplastic 4346604 Os09g0279400 42.78 LOC4350948 stress enhanced protein 1, chloroplastic 4350948 Os11g0621400 42.76 LOC4325999 Bowman-Birk type bran trypsin inhibitor 4325999 Os01g0124000 42.69 LOC4351317 non-specific lipid-transfer protein 2B-like 4351317 OSNPB_120115000 42.51 LOC4350979 cytochrome P450 71D10 4350979 Os11g0635500 42.50 LOC4349652 uncharacterized LOC4349652 4349652 Os11g0127800 42.48 LOC4332267 uncharacterized LOC4332267 4332267 Os03g0251000 42.44 LOC4338167 uncharacterized LOC4338167 4338167 Os05g0232200 42.43 LOC4332805 uncharacterized LOC4332805 4332805 Os03g0343900 42.40 LOC4344733 uncharacterized LOC4344733 4344733 Os08g0162600 42.33 LOC107281183 uncharacterized LOC107281183 107281183 42.32 LOC4330608 calcium sensing receptor, chloroplastic 4330608 Os02g0729400 42.30 LOC4332137 uncharacterized protein At1g01500 4332137 Os03g0228200 42.29 LOC4333882 zinc finger protein CONSTANS-LIKE 16 4333882 Os03g0711100 42.23 LOC4325604 tyrosine decarboxylase-like 4325604 Os01g0770200 42.13 LOC4337160 uncharacterized LOC4337160 4337160 Os04g0639300 42.09	Upper 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC107278220 B-box zinc finger protein 32 107278220 Os06g0661200 33.79 LOC4326659 cytochrome P450 72A13 4326659 Os01g0627800 33.01 LOC4332602 ocs element-binding factor 1 4332602 Os03g0306700 31.98 LOC4328590 uncharacterized LOC4328590 4328590 Os02g0193200 31.72 LOC107279016 U-box domain-containing protein 21-like 107279016 31.22 LOC9271191 protein DETOXIFICATION 16 9271191 Os10g0344000 31.06 LOC4326578 anthocyanin 3'-O-beta-glucosyltransferase 4326578 Os01g0638000 30.97 LOC4346877 probable glutathione S-transferase GSTU1 4346877 Os09g0367700 30.95 LOC4325949 probable esterase KAI2 4325949 Os01g0595600 30.92 LOC4336875 ubiquinol oxidase 1b, mitochondrial-like 4336875 Os04g0600300 30.42 LOC4324303 probable aquaporin TIP1-2 4324303 OSNPB_010975900 29.74 LOC4335113 probable inorganic phosphate transporter 1-5 4335113 OSNPB_040185600 29.44 LOC4330310 SPX domain-containing membrane protein Os02g45520-like 4330310 OSNPB_020678200 29.29 LOC4333492 protein JINGUBANG 4333492 Os03g0625300 29.12 LOC4335515 probable aldo-keto reductase 3 4335515 OSNPB_040339400 29.07 LOC9269428 cytokinin hydroxylase 9269428 Os09g0403300 29.00 LOC4342253 uncharacterized LOC4342253 4342253 Os07g0115500 28.96 LOC4340559 amino acid transporter AVT1I 4340559 Os06g0228500 28.76 LOC4343032 cytochrome P450 709B1 4343032 Os07g0418500 28.49 LOC107277927 fatty acid desaturase 4, chloroplastic 107277927 Os08g0187900 28.12 LOC4344022 cytochrome P450 709B1 4344022 Os07g0635200 27.88 LOC4349196 probable glutathione S-transferase GSTU6 4349196 Os10g0529700 27.74 LOC4332137 uncharacterized protein At1g01500 4332137 Os03g0228200 27.72 LOC4336438 UDP-glycosyltransferase 73C6-like 4336438 27.63 LOC4347248 mitochondrial phosphate carrier protein 3, mitochondrial 4347248 Os09g0454600 27.63 LOC4330867 nitrate reductase [NAD(P)H] 4330867 Os02g0770800 27.26 LOC9270250 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic-like 9270250 Os12g0617400 27.07 LOC107276699 protein NUCLEAR FUSION DEFECTIVE 4 107276699 Os03g0682100 27.07 LOC4327292 protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial 4327292 Os01g0314800 26.98 LOC4344782 phenolic glucoside malonyltransferase 2 4344782 Os08g0174100 26.93 LOC9269067 vacuolar cation/proton exchanger 1c-like 9269067 Os02g0314400 26.78 LOC4326814 tropinone reductase homolog At5g06060 4326814 Os01g0931000 26.73 LOC112936094 12-oxophytodienoate reductase 1 112936094 26.25 LOC9271713 G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 9271713 26.25 LOC4345562 uncharacterized LOC4345562 4345562 Os08g0412800 26.23 LOC107278642 putative methyltransferase DDB_G0268948 107278642 Os01g0307686 26.23 LOC4323896 ABC transporter B family member 11 4323896 Os01g0695800 26.07 LOC4334753 probable thiol methyltransferase 2 4334753 Os03g0843800 25.96 LOC4324648 bidirectional sugar transporter SWEET3b 4324648 OSNPB_010220700 25.78 LOC4325822 amino-acid permease BAT1 homolog 4325822 Os01g0945200 25.75 LOC107277191 uncharacterized LOC107277191 107277191 Os04g0467950 25.68 LOC4344094 protein DMP2 4344094 Os07g0645300 25.62 LOC107276046 protein DETOXIFICATION 16 107276046 Os10g0344500 25.47 LOC4326734 indole-3-pyruvate monooxygenase YUCCA2 4326734 Os01g0224700 25.45 LOC4338378 protein LURP-one-related 8 4338378 Os05g0311500 25.44 LOC4349090 auxin-responsive protein SAUR32 4349090 Os10g0510500 25.33 LOC9270590 trans-cinnamate 4-monooxygenase-like 9270590 25.18 LOC4328393 uncharacterized LOC4328393 4328393 Os02g0162600 25.16 LOC4327573 uncharacterized LOC4327573 4327573 Os01g0823600 25.12 LOC4340115 uncharacterized LOC4340115 4340115 Os06g0146600 24.85 LOC107280775 uncharacterized LOC107280775 107280775 24.67 LOC4336542 homeobox-leucine zipper protein HOX22 4336542 OSNPB_040541700 24.49 LOC4336390 putative beta-glucosidase 17 4336390 Os04g0513700 24.47 LOC4339388 UDP-glycosyltransferase 13 4339388 Os05g0527000 24.34 LOC4326515 cytokinin dehydrogenase 4-like 4326515 OSNPB_010940000 24.32 LOC9272132 LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1 9272132 Os08g0335500 24.30 LOC4338560 beta-glucosidase 22-like 4338560 OSNPB_050366600 24.11 LOC4331884 protein DETOXIFICATION 27 4331884 Os03g0188100 24.08 LOC107275818 boron transporter 4 107275818 Os01g0175700 24.05 LOC4334124 AT-rich interactive domain-containing protein 1B 4334124 Os03g0750500 23.88 LOC9269280 jasmonate O-methyltransferase 9269280 Os06g0313440 23.87 LOC4342135 protein REVEILLE 1 4342135 Os06g0728700 23.85 LOC107280774 uncharacterized LOC107280774 107280774 23.84 LOC4330432 ubiquinol oxidase 1c, mitochondrial-like 4330432 Os02g0700400 23.69 LOC4341276 uncharacterized LOC4341276 4341276 Os06g0554200 23.66 LOC9271101 7-deoxyloganetic acid glucosyltransferase 9271101 Os07g0489200 23.62 LOC4324804 heme-binding-like protein At3g10130, chloroplastic 4324804 Os01g0850900 23.59 LOC4338040 ABC transporter C family member 8 4338040 Os05g0196100 23.55 LOC4337967 UDP-glycosyltransferase 73E1 4337967 Os05g0177500 23.46 LOC4325765 probable glutathione S-transferase 4325765 Os01g0949900 23.39 LOC4344050 peroxidase 2-like 4344050 23.34 LOC4347234 beta-1,3-galactosyltransferase 7 4347234 Os09g0452900 23.19 LOC9267512 E3 ubiquitin-protein ligase RGLG2 9267512 Os09g0565300 23.17 LOC4338934 protein TRANSPARENT TESTA 1 4338934 Os05g0444200 23.16 LOC9268771 ethylene-responsive transcription factor ERF054 9268771 Os02g0638650 23.15 LOC4326664 cytochrome P450 72A14 4326664 Os01g0628900 23.10 LOC4338399 receptor-like protein kinase FERONIA 4338399 Os05g0317900 23.07 LOC4344046 1-Cys peroxiredoxin B-like 4344046 OSNPB_070638400 23.06 LOC4326661 cytochrome P450 72A15 4326661 Os01g0628000 23.05 LOC4330933 18.6 kDa class III heat shock protein-like 4330933 OSNPB_020782500 23.03 LOC4326862 uncharacterized LOC4326862 4326862 Os01g0666600 22.97 LOC4339786 probable esterase KAI2 4339786 Os05g0590300 22.96 LOC4342039 F-box/kelch-repeat protein SKIP25 4342039 Os06g0711700 22.89 LOC4335602 protein DETOXIFICATION 16 4335602 Os04g0373400 22.72 LOC4340883 carboxyl-terminal-processing peptidase 3, chloroplastic 4340883 Os06g0318600 22.70 LOC4349443 haloacid dehalogenase-like hydrolase domain-containing protein Sgpp 4349443 Os10g0568900 22.62 LOC4339385 uncharacterized LOC4339385 4339385 Os05g0526700 22.52 LOC4325348 probable serine incorporator 4325348 Os01g0179800 22.51 LOC4343348 probable 5'-adenylylsulfate reductase 1, chloroplastic 4343348 OSNPB_070509800 22.49 LOC4349181 probable glutathione S-transferase GSTU6 4349181 Os10g0527400 22.48 LOC4326913 uncharacterized LOC4326913 4326913 Os01g0281100 22.35 LOC4326657 cytochrome P450 72A15 4326657 Os01g0627500 22.34 LOC4345521 UDP-glycosyltransferase 85A2 4345521 Os08g0404000 22.27 LOC4342332 L-type lectin-domain containing receptor kinase IV.1 4342332 22.22 LOC4334183 isoflavone 2'-hydroxylase 4334183 Os03g0760200 22.20 LOC4336389 beta-glucosidase 16-like 4336389 OSNPB_040513400 22.19 LOC9270410 cysteine-rich receptor-like protein kinase 15 9270410 Os01g0342200 22.09 LOC4324077 probable carboxylesterase 15 4324077 Os01g0155000 22.03 LOC4344783 anthocyanin 5-aromatic acyltransferase 4344783 Os08g0174300 22.02 LOC4347195 uncharacterized LOC4347195 4347195 Os09g0444900 21.99	Upper 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC4343441 isocitrate lyase-like 4343441 OSNPB_070529000 38.62 LOC4323915 uncharacterized LOC4323915 4323915 Os01g0727500 35.14 LOC4333712 wiskott-Aldrich syndrome protein homolog 4333712 Os03g0676400 33.50 LOC4349395 ethylene-responsive transcription factor 5 4349395 32.61 LOC4337129 uncharacterized LOC4337129 4337129 Os04g0635000 32.34 LOC4333197 zinc finger protein 36-like 4333197 Os03g0437200 31.65 LOC4326920 mitogen-activated protein kinase kinase kinase 17 4326920 Os01g0699600 31.22 LOC4341678 WRKY transcription factor WRKY28-like 4341678 Os06g0649000 31.19 LOC4330793 RING-H2 finger protein ATL29 4330793 Os02g0759400 31.14 LOC4330155 homeobox-leucine zipper protein HOX24-like 4330155 OSNPB_020649300 31.08 LOC4334593 zinc finger protein ZAT12 4334593 Os03g0820400 30.93 LOC4345860 mavicyanin 4345860 Os08g0482600 30.64 LOC4351514 cytochrome P450 94C1 4351514 Os12g0150200 30.63 LOC4338424 uncharacterized LOC4338424 4338424 Os05g0324700 30.52 LOC4348336 UPF0301 protein TC_0483 4348336 Os10g0330400 30.21 LOC4339974 dehydration-responsive element-binding protein 1C 4339974 OSNPB_060127100 30.21 LOC4325945 WRKY transcription factor WRKY24 4325945 Os01g0714800 29.89 LOC4345994 probable lipoxygenase 8, chloroplastic 4345994 OSNPB_080509100 29.75 LOC4345815 ethylene-responsive transcription factor ERF109 4345815 Os08g0474000 29.72 LOC4343433 probable carboxylesterase 3 4343433 Os07g0526600 29.45 LOC4330306 dehydration-responsive element-binding protein 1G-like 4330306 OSNPB_020677300 29.36 LOC4330641 uncharacterized LOC4330641 4330641 Os02g0733900 29.28 LOC4343432 bisdemethoxycurcumin synthase-like 4343432 Os07g0526400 29.11 LOC4329324 cytochrome P450 CYP73A100 4329324 Os02g0467000 28.81 LOC4324540 uncharacterized LOC4324540 4324540 Os01g0498300 28.47 LOC4342424 9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic-like 4342424 28.42 LOC4330048 uncharacterized LOC4330048 4330048 Os02g0629000 28.34 LOC4330329 E3 ubiquitin-protein ligase RHA1B 4330329 Os02g0682300 28.15 LOC4329585 E3 ubiquitin-protein ligase PUB23 4329585 Os02g0539200 28.10 LOC4324829 nematode resistance protein-like HSPRO1 4324829 Os01g0855600 28.10 LOC4346220 dehydration-responsive element-binding protein 1I 4346220 28.04 LOC107277534 uncharacterized LOC107277534 107277534 Os03g0356526 27.96 LOC4348533 protein TIFY 11d-like 4348533 OSNPB_100392400 27.95 LOC4326918 mitogen-activated protein kinase kinase kinase 18 4326918 Os01g0699400 27.92 LOC4336721 dehydration-responsive element-binding protein 1E-like 4336721 OSNPB_040572400 27.89 LOC4348531 protein TIFY 11e-like 4348531 OSNPB_100391400 27.79 LOC4344489 uncharacterized acetyltransferase At3g50280 4344489 Os08g0112300 27.62 LOC4327669 transcription factor bHLH13 4327669 Os01g0705700 27.58 LOC4330349 protein REVEILLE 1 4330349 Os02g0685200 27.19 LOC4340122 uncharacterized LOC4340122 4340122 Os06g0147300 27.18 LOC4329322 inositol-tetrakisphosphate 1-kinase 4-like 4329322 OSNPB_020466400 26.99 LOC4334553 NAC domain-containing protein 2-like 4334553 Os03g0815100 26.94 LOC107276750 E3 ubiquitin-protein ligase EL5 107276750 Os02g0561000 26.85 LOC9268154 malate synthase-like 9268154 OSNPB_040486950 26.84 LOC4347620 dehydration-responsive element-binding protein 1A-like 4347620 OSNPB_090522200 26.84 LOC107276751 E3 ubiquitin-protein ligase EL5 107276751 Os02g0560200 26.75 LOC4349792 cytochrome P450 94C1 4349792 Os11g0151400 26.73 LOC4329685 E3 ubiquitin-protein ligase EL5 4329685 Os02g0559800 26.71 LOC4337274 cysteine-rich receptor-like protein kinase 6 4337274 Os04g0659300 26.65 LOC4350448 water stress-inducible protein Rab21-like 4350448 Os11g0451700 26.58 LOC4325959 amino acid transporter AVT1I 4325959 Os01g0597600 26.51 LOC4347266 ethylene-responsive transcription factor ERF109 4347266 Os09g0457900 26.51 LOC4325408 probable calcium-binding protein CML31 4325408 OSNPB_010955100 26.38 LOC4332121 allene oxide synthase 2-like 4332121 OSNPB_030225900 26.34 LOC4338583 probable esterase PIR7A 4338583 Os05g0370700 26.33 LOC4334017 uncharacterized LOC4334017 4334017 Os03g0734500 26.28 LOC107276749 E3 ubiquitin-protein ligase EL5 107276749 Os02g0561800 26.25 LOC4347769 probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL9 4347769 OSNPB_090547500 26.19 LOC4347195 uncharacterized LOC4347195 4347195 Os09g0444900 26.06 LOC4335417 transcription factor bHLH35 4335417 Os04g0301500 26.02 LOC4341202 VQ motif-containing protein 10 4341202 Os06g0530600 26.02 LOC107276747 E3 ubiquitin-protein ligase EL5 107276747 Os02g0560600 25.99 LOC4334864 ethylene-responsive transcription factor 15 4334864 Os03g0860100 25.95 LOC4335798 probable F-box protein At2g36090 4335798 Os04g0414500 25.93 LOC4352653 zinc finger protein 1 4352653 Os12g0583700 25.92 LOC107276748 E3 ubiquitin-protein ligase EL5 107276748 Os02g0561400 25.91 LOC4345814 alpha-amylase isozyme 3D-like 4345814 OSNPB_080473900 25.91 LOC4351185 xylanase inhibitor protein 1-like 4351185 Os11g0700900 25.89 LOC9267428 uncharacterized LOC9267428 9267428 Os07g0587300 25.88 LOC9272673 uncharacterized LOC9272673 9272673 Os01g0727700 25.87 LOC4332499 probable 2-oxoglutarate-dependent dioxygenase At5g05600 4332499 Os03g0289800 25.87 LOC9268807 tryptophan synthase alpha chain 9268807 Os03g0797500 25.84 LOC4345718 uncharacterized LOC4345718 4345718 Os08g0448100 25.82 LOC4351693 carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic 4351693 Os12g0189300 25.76 LOC4338925 transcription factor DIVARICATA 4338925 Os05g0442400 25.73 LOC4325662 protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1 4325662 Os01g0186900 25.50 LOC4347619 dehydration-responsive element-binding protein 1H 4347619 OSNPB_090522100 25.45 LOC4332204 U-box domain-containing protein 21 4332204 Os03g0240600 25.40 LOC4349417 beta-amylase 3, chloroplastic 4349417 Os10g0565200 25.37 LOC4324833 extradiol ring-cleavage dioxygenase 4324833 Os01g0878900 25.34 LOC4337457 probable CCR4-associated factor 1 homolog 11 4337457 Os04g0684900 25.30 LOC4326919 mitogen-activated protein kinase kinase kinase 18 4326919 Os01g0699500 25.26 LOC4331833 protein TIFY 11c-like 4331833 OSNPB_030180900 25.25 LOC4341855 cytochrome P450 77A3 4341855 Os06g0680700 25.24 LOC107278025 translation initiation factor IF-2 107278025 Os08g0173000 25.08 LOC4331521 uncharacterized LOC4331521 4331521 Os03g0133100 25.06 LOC4342246 probable protein phosphatase 2C 61 4342246 OSNPB_070114000 25.05 LOC4340377 RING-H2 finger protein ATL3 4340377 Os06g0192800 25.02 LOC4330189 ethylene-responsive transcription factor 2 4330189 Os02g0654700 25.02 LOC4324059 protein DELAY OF GERMINATION 1 4324059 Os01g0159000 25.02 LOC4346786 uncharacterized LOC4346786 4346786 Os09g0341801 25.00 LOC4351199 zinc finger protein ZAT8 4351199 Os11g0702400 24.98 LOC4339600 gibberellin 2-beta-dioxygenase 3-like 4339600 Os05g0560900 24.91 LOC4345414 putative serine/threonine-protein kinase-like protein CCR3 4345414 Os08g0374701 24.84 LOC4332382 AT-hook motif nuclear-localized protein 29 4332382 Os03g0270000 24.84 LOC4331832 protein TIFY 11a-like 4331832 OSNPB_030180800 24.82 LOC9269465 transcription factor BHLH148-like 9269465 Os01g0773800 24.78 LOC9272243 non-canonical poly(A) RNA polymerase PAPD7 9272243 Os08g0173300 24.78 LOC4348540 GDSL esterase/lipase At5g45910 4348540 Os10g0393800 24.76 LOC4329329 cytochrome P450 CYP73A100 4329329 Os02g0467600 24.74	Upper 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC4334644 uncharacterized LOC4334644 4334644 Os03g0826900 55.30 LOC4348595 BURP domain-containing protein 16-like 4348595 OSNPB_100409400 48.96 LOC4343441 isocitrate lyase-like 4343441 OSNPB_070529000 43.35 LOC4334643 uncharacterized LOC4334643 4334643 Os03g0826800 43.30 LOC4341299 uncharacterized LOC4341299 4341299 Os06g0559400 42.57 LOC4332422 cysteine-rich repeat secretory protein 55 4332422 Os03g0277600 42.00 LOC4349689 putative receptor protein kinase ZmPK1 4349689 Os11g0133001 41.57 LOC4335593 wall-associated receptor kinase 2 4335593 Os04g0370900 38.18 LOC9268371 universal stress protein PHOS32 9268371 Os05g0355400 36.53 LOC4332423 cysteine-rich repeat secretory protein 55 4332423 Os03g0277700 36.51 LOC9271092 auxin-responsive protein SAUR36-like 9271092 OSNPB_090545300 35.67 LOC9266264 anthranilate O-methyltransferase 1-like 9266264 Os11g0256900 35.42 LOC4351046 glutaredoxin-C10-like 4351046 OSNPB_110655900 34.94 LOC4347963 peroxidase N 4347963 Os10g0109600 34.60 LOC4336039 aldose 1-epimerase 4336039 Os04g0458600 34.30 LOC4332896 uncharacterized LOC4332896 4332896 Os03g0363100 34.17 LOC4335594 wall-associated receptor kinase 2 4335594 Os04g0371000 33.99 LOC4351185 xylanase inhibitor protein 1-like 4351185 Os11g0700900 33.76 LOC4344207 momilactone A synthase-like 4344207 Os07g0664600 32.88 LOC4351191 xylanase inhibitor protein 2-like 4351191 Os11g0701500 32.05 LOC107278441 uncharacterized LOC107278441 107278441 Os01g0912800 32.04 LOC4345993 lipoxygenase 7, chloroplastic-like 4345993 OSNPB_080508800 31.94 LOC4338650 aspartic proteinase nepenthesin-1 4338650 Os05g0384300 31.91 LOC4335075 uncharacterized LOC4335075 4335075 Os04g0175400 31.89 LOC4346052 xylanase inhibitor protein 1-like 4346052 Os08g0518900 31.61 LOC4345573 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 4345573 Os08g0414700 31.61 LOC9269735 putative dihydroflavonol 4-reductase 9269735 Os03g0184550 31.46 LOC4352104 thiosulfate sulfurtransferase 18 4352104 Os12g0428000 31.24 LOC4326519 glucan endo-1,3-beta-glucosidase GII 4326519 Os01g0940800 30.93 LOC4343492 glucan endo-1,3-beta-glucosidase 3 4343492 Os07g0539900 30.70 LOC112936064 probable LRR receptor-like serine/threonine-protein kinase At1g56130 112936064 30.26 LOC4340940 probable xyloglucan endotransglucosylase/hydrolase protein 26 4340940 Os06g0335975 30.07 LOC4331044 pyrophosphate-energized vacuolar membrane proton pump 4331044 Os02g0802500 30.03 LOC4344199 momilactone A synthase-like 4344199 Os07g0663800 29.95 LOC4345351 uncharacterized LOC4345351 4345351 29.91 LOC4324396 uncharacterized LOC4324396 4324396 Os01g0681700 29.90 LOC4324548 uncharacterized LOC4324548 4324548 Os01g0962100 29.62 LOC4340120 uncharacterized LOC4340120 4340120 Os06g0147100 29.24 LOC107275253 CCG-binding protein 1 107275253 Os03g0765400 29.11 LOC107279601 uncharacterized LOC107279601 107279601 29.02 LOC9268154 malate synthase-like 9268154 OSNPB_040486950 28.93 LOC4346790 protein ACCELERATED CELL DEATH 6 4346790 Os09g0343200 28.78 LOC107277263 ankyrin repeat and SOCS box protein 11 107277263 Os11g0250600 28.71 LOC4346053 uncharacterized LOC4346053 4346053 Os08g0519050 28.53 LOC4330048 uncharacterized LOC4330048 4330048 Os02g0629000 28.49 LOC4344999 germin-like protein 8-12 4344999 OSNPB_080231400 28.39 LOC9272115 uncharacterized LOC9272115 9272115 Os06g0698748 28.38 LOC9268405 AT-hook motif nuclear-localized protein 28 9268405 Os08g0478466 28.29 LOC4351410 putative receptor protein kinase ZmPK1 4351410 Os12g0130300 28.23 LOC4341233 heavy metal-associated isoprenylated plant protein 29 4341233 Os06g0542300 28.11 LOC107276324 uncharacterized LOC107276324 107276324 Os01g0912850 28.07 LOC107277316 pathogenesis-related protein 1 107277316 Os07g0126301 27.92 LOC112935986 S-norcoclaurine synthase 1-like 112935986 27.77 LOC4324330 glycine-rich cell wall structural protein 2-like 4324330 Os01g0916100 27.77 LOC4337421 stem-specific protein TSJT1 4337421 Os04g0679400 27.74 LOC4345814 alpha-amylase isozyme 3D-like 4345814 OSNPB_080473900 27.70 LOC107279791 uncharacterized LOC107279791 107279791 27.62 LOC9266123 ethylene-responsive transcription factor 1B 9266123 Os09g0572000 27.43 LOC9266337 receptor-like protein EIX2 9266337 Os11g0567800 27.43 LOC9270927 pathogenesis-related protein 1 9270927 Os07g0125500 27.35 LOC4337100 anthocyanidin reductase ((2S)-flavan-3-ol-forming) 4337100 Os04g0630800 27.34 LOC4327183 cytochrome P450 71A1 4327183 Os01g0227700 27.24 LOC4339960 uncharacterized LOC4339960 4339960 Os06g0125200 27.21 LOC4337936 universal stress protein PHOS32 4337936 Os05g0170200 27.21 LOC4343481 putative receptor-like protein kinase At4g00960 4343481 Os07g0537900 27.06 LOC107278421 RING-H2 finger protein ATL72 107278421 Os02g0541500 27.05 LOC4328711 uncharacterized LOC4328711 4328711 26.90 LOC4349363 protein SRG1 4349363 Os10g0558750 26.83 LOC4350737 receptor-like protein EIX2 4350737 Os11g0565000 26.80 LOC4343485 cysteine-rich receptor-like protein kinase 6 4343485 Os07g0538400 26.68 LOC107278391 GDSL esterase/lipase At4g10955-like 107278391 Os07g0528200 26.64 LOC9267311 uncharacterized LOC9267311 9267311 26.64 LOC4337098 anthocyanidin reductase ((2S)-flavan-3-ol-forming) 4337098 Os04g0630600 26.60 LOC4351687 uncharacterized LOC4351687 4351687 Os12g0186600 26.56 LOC4335460 cysteine-rich receptor-like protein kinase 6 4335460 Os04g0316200 26.45 LOC4339561 glutamate synthase 2 [NADH], chloroplastic-like 4339561 OSNPB_050555600 26.21 LOC4342310 pathogenesis-related protein 1 4342310 Os07g0124900 26.06 LOC4335481 cysteine-rich receptor-like protein kinase 6 4335481 Os04g0322100 25.92 LOC107281669 uncharacterized LOC107281669 107281669 25.82 LOC4335576 L-gulonolactone oxidase 5 4335576 Os04g0360500 25.81 LOC112935981 germin-like protein 8-10 112935981 25.61 LOC9269077 putative HVA22-like protein g 9269077 Os11g0156600 25.54 LOC4348710 universal stress protein YxiE 4348710 Os10g0437500 25.52 LOC4326262 sulfoquinovosidase 4326262 Os01g0268600 25.51 LOC4342462 probable carboxylesterase 15 4342462 Os07g0162600 25.37 LOC4325269 uncharacterized LOC4325269 4325269 Os01g0678000 25.37 LOC4340506 LMBR1 domain-containing protein 2 homolog A 4340506 Os06g0218900 25.32 LOC112939851 uncharacterized LOC112939851 112939851 25.28 LOC107280571 uncharacterized LOC107280571 107280571 OSNPB_040468000 25.25 LOC4339173 SNF1-related protein kinase regulatory subunit beta-1 4339173 Os05g0491200 25.18 LOC107275279 probable E3 ubiquitin-protein ligase ATL45 107275279 Os06g0534900 25.17 LOC4343786 zinc finger protein 7 4343786 Os07g0593000 25.11 LOC4334617 Bowman-Birk type trypsin inhibitor 4334617 Os03g0823400 24.97 LOC4349759 uncharacterized LOC4349759 4349759 Os11g0146000 24.92 LOC4333181 pyruvate, phosphate dikinase 2-like 4333181 OSNPB_030432100 24.87 LOC4343484 putative receptor-like protein kinase At4g00960 4343484 Os07g0538300 24.84 LOC4345860 mavicyanin 4345860 Os08g0482600 24.83 LOC4330612 aldehyde dehydrogenase family 2 member B7, mitochondrial 4330612 Os02g0730000 24.77 LOC9268844 receptor-like protein EIX2 9268844 Os01g0601675 24.77 LOC4326646 uncharacterized LOC4326646 4326646 24.63	Upper 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC4343427 WAT1-related protein At5g64700 4343427 Os07g0525100 28.30 LOC107281276 polygalacturonase At1g48100-like 107281276 27.66 LOC4338650 aspartic proteinase nepenthesin-1 4338650 Os05g0384300 27.08 LOC4332775 alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial 4332775 Os03g0338000 25.56 LOC4335170 senescence-specific cysteine protease SAG39 4335170 Os04g0208200 25.39 LOC4337918 G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 4337918 Os05g0166300 25.19 LOC4344914 probable LRR receptor-like serine/threonine-protein kinase At1g56140 4344914 Os08g0203400 24.67 LOC4351184 myb-related protein MYBAS1-like 4351184 OSNPB_110700500 24.39 LOC4335580 wall-associated receptor kinase 2 4335580 Os04g0365100 24.26 LOC4340797 uncharacterized LOC4340797 4340797 Os06g0293500 24.04 LOC4342395 photosystem II 10 kDa polypeptide, chloroplastic 4342395 Os07g0147500 23.68 LOC4339187 WAT1-related protein At5g07050 4339187 Os05g0493800 23.65 LOC4333118 cytochrome P450 78A5 4333118 Os03g0417700 23.14 LOC107276339 O-methyltransferase ZRP4 107276339 Os12g0441600 22.96 LOC107277263 ankyrin repeat and SOCS box protein 11 107277263 Os11g0250600 22.92 LOC9266337 receptor-like protein EIX2 9266337 Os11g0567800 22.76 LOC4329191 RHOMBOID-like protein 9, chloroplastic 4329191 Os02g0326700 22.44 LOC4345833 patatin-like protein 2 4345833 OSNPB_080477500 22.38 LOC4327757 cation transporter HKT8-like 4327757 OSNPB_010307500 22.34 LOC107278441 uncharacterized LOC107278441 107278441 Os01g0912800 22.26 LOC4340458 L-type lectin-domain containing receptor kinase S.4 4340458 Os06g0210400 21.90 LOC4344902 NAC domain-containing protein 21/22 4344902 Os08g0200600 21.90 LOC4335581 putative wall-associated receptor kinase-like 16 4335581 Os04g0366000 21.78 LOC107278200 protein PYRICULARIA ORYZAE RESISTANCE 21 107278200 Os04g0400700 21.74 LOC4344999 germin-like protein 8-12 4344999 OSNPB_080231400 21.61 LOC4350276 UPF0481 protein At3g47200 4350276 Os11g0278300 21.57 LOC4346822 probable LRR receptor-like serine/threonine-protein kinase At1g05700 4346822 Os09g0351800 21.36 LOC4343460 aspartic proteinase nepenthesin-1 4343460 Os07g0532800 21.27 LOC4326278 salt stress-induced protein-like 4326278 Os01g0355250 21.15 LOC4349392 phospholipase A1-Ibeta2, chloroplastic 4349392 Os10g0562200 21.08 LOC4333368 ent-isokaurene C2/C3-hydroxylase-like 4333368 Os03g0594900 21.04 LOC4325285 probable purine permease 4 4325285 Os01g0680200 21.03 LOC4331300 expansin-B7-like 4331300 OSNPB_030102700 21.01 LOC4340977 probable transcription factor GLK1 4340977 OSNPB_060348800 21.00 LOC4331349 protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 4331349 Os03g0109800 20.93 LOC4335593 wall-associated receptor kinase 2 4335593 Os04g0370900 20.78 LOC4324330 glycine-rich cell wall structural protein 2-like 4324330 Os01g0916100 20.78 LOC107280424 senescence-specific cysteine protease SAG39 107280424 Os03g0752500 20.72 LOC4324302 transcription factor MYB59 4324302 Os01g0975300 20.71 LOC9269553 wall-associated receptor kinase 2 9269553 Os04g0368000 20.68 LOC4350268 enoyl-CoA delta isomerase 2, peroxisomal 4350268 Os11g0274700 20.68 LOC9271639 uncharacterized LOC9271639 9271639 Os11g0180100 20.64 LOC9266978 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic 9266978 Os05g0105800 20.60 LOC4335091 9-beta-pimara-7,15-diene oxidase-like 4335091 OSNPB_040178400 20.59 LOC4335594 wall-associated receptor kinase 2 4335594 Os04g0371000 20.55 LOC4345957 wall-associated receptor kinase 3 4345957 Os08g0501700 20.52 LOC4335030 uncharacterized LOC4335030 4335030 Os04g0154800 20.47 LOC4327536 WAT1-related protein At5g07050 4327536 Os01g0803300 20.34 LOC107277585 uncharacterized LOC107277585 107277585 Os07g0665801 20.19 LOC4326499 ervatamin-B 4326499 Os01g0347500 20.13 LOC9269764 anti-sigma-I factor RsgI6 9269764 Os03g0201901 20.05 LOC4332925 peroxidase 2 4332925 Os03g0368900 19.93 LOC4344635 beta-sesquiphellandrene synthase 4344635 Os08g0139700 19.75 LOC4336908 xyloglucan endotransglycosylase/hydrolase protein 8-like 4336908 Os04g0604900 19.73 LOC4351694 photosystem I reaction center subunit N, chloroplastic 4351694 Os12g0189400 19.73 LOC4330408 pentatricopeptide repeat-containing protein At1g31920 4330408 Os02g0697500 19.71 LOC4341630 premnaspirodiene oxygenase 4341630 Os06g0641500 19.61 LOC4346837 probable LRR receptor-like serine/threonine-protein kinase At1g51810 4346837 Os09g0356800 19.59 LOC4335799 photosystem I subunit O 4335799 Os04g0414700 19.56 LOC9266660 uncharacterized LOC9266660 9266660 Os01g0522600 19.47 LOC4346779 probable kinase CHARK 4346779 Os09g0339000 19.47 LOC107276896 L-type lectin-domain containing receptor kinase IX.2 107276896 Os05g0231100 19.40 LOC4336028 chlorophyll a-b binding protein CP24, chloroplastic 4336028 Os04g0457000 19.37 LOC4349896 BURP domain-containing protein 17-like 4349896 OSNPB_110170900 19.34 LOC4336810 putative ABC transporter C family member 15 4336810 Os04g0588700 19.31 LOC9267048 wall-associated receptor kinase 2 9267048 Os09g0561000 19.20 LOC4334437 protein WRKY1 4334437 Os03g0798500 19.13 LOC9270378 probable L-type lectin-domain containing receptor kinase S.5 9270378 Os06g0328400 19.09 LOC4333359 chlorophyll a-b binding protein, chloroplastic-like 4333359 OSNPB_030592500 19.08 LOC4332069 protein DETOXIFICATION 42 4332069 Os03g0216700 19.08 LOC4336400 protein CUP-SHAPED COTYLEDON 1 4336400 Os04g0515900 18.99 LOC9271284 alpha-amylase/trypsin inhibitor 9271284 Os01g0113350 18.97 LOC4337415 protochlorophyllide reductase A, chloroplastic-like 4337415 OSNPB_040678700 18.97 LOC4338127 uncharacterized LOC4338127 4338127 Os05g0220500 18.94 LOC4334854 protein DETOXIFICATION 56 4334854 Os03g0858800 18.92 LOC112939348 uncharacterized LOC112939348 112939348 18.82 LOC9269069 protein CHUP1, chloroplastic 9269069 Os12g0105300 18.79 LOC4326501 ervatamin-B 4326501 Os01g0348000 18.71 LOC4345663 chlorophyll a-b binding protein P4, chloroplastic 4345663 Os08g0435900 18.70 LOC4344466 glycolipid transfer protein 2 4344466 Os08g0108700 18.64 LOC4347207 cytochrome P450 76M5-like 4347207 Os09g0447300 18.61 LOC4330974 cytochrome c oxidase subunit 6b-2 4330974 Os02g0791400 18.60 LOC4338611 lichenase-2 4338611 Os05g0375400 18.54 LOC112938349 uncharacterized LOC112938349 112938349 18.48 LOC4332690 magnesium-chelatase subunit ChlH, chloroplastic-like 4332690 OSNPB_030323200 18.42 LOC4343604 chlorophyll a-b binding protein of LHCII type III, chloroplastic 4343604 Os07g0562700 18.41 LOC9268232 iron-phytosiderophore transporter YSL15-like 9268232 OSNPB_020650300 18.38 LOC4334921 probable L-type lectin-domain containing receptor kinase S.5 4334921 Os04g0109100 18.33 LOC4344050 peroxidase 2-like 4344050 18.28 LOC4349348 expansin-B2-like 4349348 OSNPB_100555700 18.24 LOC107275818 boron transporter 4 107275818 Os01g0175700 18.22 LOC4351127 beta-glucosidase-like SFR2, chloroplastic 4351127 OSNPB_110683500 18.20 LOC4341933 peroxidase 16 4341933 Os06g0695300 18.19 LOC4339820 putative RING-H2 finger protein ATL12 4339820 Os05g0596500 18.15 LOC4342404 photosystem I reaction center subunit psaK, chloroplastic 4342404 Os07g0148900 18.13 LOC4330608 calcium sensing receptor, chloroplastic 4330608 Os02g0729400 18.10 LOC9267026 disease resistance protein RGA4-like 9267026 Os08g0246100 18.10 LOC4346839 disease resistance protein RGA5-like 4346839 Os09g0357400 18.01 LOC4325722 putative wall-associated receptor kinase-like 16 4325722 Os01g0364800 17.90 LOC4324599 chlorophyll a-b binding protein 2, chloroplastic-like 4324599 OSNPB_010600900 17.88	Upper 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC4330349 protein REVEILLE 1 4330349 Os02g0685200 31.80 LOC4336779 uncharacterized LOC4336779 4336779 Os04g0583900 28.31 LOC4331223 uncharacterized LOC4331223 4331223 Os02g0827400 23.92 LOC9269176 carboxyl-terminal-processing peptidase 2, chloroplastic 9269176 Os02g0815700 23.48 LOC9272566 cyclic dof factor 2 9272566 Os01g0264000 22.88 LOC4344703 protein LHY 4344703 Os08g0157600 22.85 LOC4350451 dehydrin Rab16D-like 4350451 OSNPB_110453900 21.11 LOC4333528 organic cation/carnitine transporter 7 4333528 Os03g0638200 19.99 LOC4348336 UPF0301 protein TC_0483 4348336 Os10g0330400 19.70 LOC107275971 uncharacterized LOC107275971 107275971 Os04g0433900 19.53 LOC4324254 late embryogenesis abundant protein 14-like 4324254 Os01g0705200 19.31 LOC9268838 probable protein phosphatase 2C 37 9268838 19.29 LOC9270552 indole-3-glycerol phosphate lyase, chloroplastic 9270552 Os03g0797300 19.14 LOC4349559 uncharacterized LOC4349559 4349559 Os11g0106800 18.53 LOC4325036 uncharacterized LOC4325036 4325036 Os01g0900200 18.44 LOC4350454 water stress-inducible protein Rab21-like 4350454 OSNPB_110454300 18.35 LOC112938289 protein CELLULOSE SYNTHASE INTERACTIVE 1-like 112938289 18.25 LOC4326924 PH, RCC1 and FYVE domains-containing protein 1 4326924 Os01g0700200 18.05 LOC4328864 potassium channel KAT1-like 4328864 OSNPB_020245800 17.94 LOC112938725 uncharacterized LOC112938725 112938725 17.88 LOC4337129 uncharacterized LOC4337129 4337129 Os04g0635000 17.82 LOC4336376 peroxygenase-like 4336376 OSNPB_040511200 17.80 LOC4352878 CSC1-like protein RXW8 4352878 Os12g0633600 17.62 LOC4332831 alpha-humulene synthase 4332831 Os03g0348200 17.60 LOC4341273 heat stress transcription factor C-2b-like 4341273 OSNPB_060553100 17.45 LOC112936243 U5 spliceosomal RNA 112936243 17.45 LOC4347152 uncharacterized LOC4347152 4347152 Os09g0436800 17.31 LOC9266251 gibberellin 2-beta-dioxygenase 6-like 9266251 Os02g0630300 17.27 LOC4344376 SNF2 domain-containing protein CLASSY 1 4344376 Os07g0692600 17.24 LOC4331521 uncharacterized LOC4331521 4331521 Os03g0133100 17.19 LOC4324034 uncharacterized LOC4324034 4324034 16.74 LOC112936123 serine/threonine-protein phosphatase 7 long form homolog 112936123 16.73 LOC4349611 probable WRKY transcription factor 67 4349611 Os11g0117400 16.68 LOC4340195 ABC transporter C family member 10 4340195 Os06g0158900 16.49 LOC4328933 BAG family molecular chaperone regulator 6 4328933 Os02g0259900 16.48 LOC9266683 uncharacterized LOC9266683 9266683 Os02g0197900 16.42 LOC9272301 nuclear poly(A) polymerase 3 9272301 Os03g0313300 16.29 LOC107279247 uncharacterized LOC107279247 107279247 16.24 LOC9266492 uncharacterized LOC9266492 9266492 Os03g0176700 16.11 LOC4326684 kinesin-like protein KIN-13B 4326684 OSNPB_010625200 16.06 LOC4346220 dehydration-responsive element-binding protein 1I 4346220 15.98 LOC4341998 uncharacterized LOC4341998 4341998 Os06g0704700 15.78 LOC4339775 AAA-ATPase At3g50940 4339775 Os05g0588900 15.78 LOC107280774 uncharacterized LOC107280774 107280774 15.72 LOC9267153 uncharacterized LOC9267153 9267153 15.71 LOC4345507 uncharacterized LOC4345507 4345507 Os08g0400000 15.68 LOC4336156 C2 and GRAM domain-containing protein At5g50170 4336156 Os04g0476600 15.67 LOC4348272 proline-rich protein 4 4348272 Os10g0205700 15.57 LOC9268636 exocyst complex component EXO70A1 9268636 Os04g0685500 15.55 LOC9269871 uncharacterized LOC9269871 9269871 15.54 LOC107279777 scarecrow-like protein 30 107279777 15.53 LOC4348876 non-lysosomal glucosylceramidase 4348876 Os10g0473400 15.53 LOC4350453 dehydrin Rab16B-like 4350453 OSNPB_110454200 15.50 LOC4349417 beta-amylase 3, chloroplastic 4349417 Os10g0565200 15.48 LOC4339095 alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial 4339095 Os05g0475400 15.48 LOC4328809 heat stress transcription factor C-2a-like 4328809 OSNPB_020232000 15.39 LOC4338247 phosphatidylinositol transfer protein 3 4338247 Os05g0267800 15.30 LOC4333896 glutamine synthetase cytosolic isozyme 1-3-like 4333896 OSNPB_030712800 15.24 LOC4352592 uncharacterized LOC4352592 4352592 Os12g0572800 15.12 LOC4337831 DNA-directed RNA polymerase II subunit 1 4337831 Os05g0151000 15.10 LOC9266316 uncharacterized LOC9266316 9266316 15.05 LOC4329733 probable bifunctional riboflavin biosynthesis protein RIBA 2, chloroplastic 4329733 OSNPB_020572400 15.04 LOC107277927 fatty acid desaturase 4, chloroplastic 107277927 Os08g0187900 15.01 LOC4341698 putative GDP-L-fucose synthase 2 4341698 OSNPB_060652300 14.96 LEA19 late embryogenesis abundant protein 19-like 4339480 OSNPB_050542500 14.88 LOC9271951 uncharacterized LOC9271951 9271951 Os02g0164000 14.79 LOC107279909 glutathione S-transferase T3-like 107279909 14.78 LOC4347822 uncharacterized LOC4347822 4347822 Os09g0556700 14.77 LOC4340204 GDSL esterase/lipase At4g01130 4340204 Os06g0160200 14.76 LOC4331878 WD and tetratricopeptide repeats protein 1-like 4331878 Os03g0187300 14.74 LOC4333164 glutelin type-A 3-like 4333164 OSNPB_030427300 14.73 LOC9271022 uncharacterized LOC9271022 9271022 14.73 LOC4352619 uncharacterized LOC4352619 4352619 Os12g0577600 14.64 LOC112938951 uncharacterized LOC112938951 112938951 14.60 LOC107278869 uncharacterized LOC107278869 107278869 14.60 LOC107278712 kinesin-like protein KIN-5B 107278712 Os03g0279816 14.59 LOC4324092 disease resistance protein RGA5-like 4324092 Os01g0603100 14.42 LOC4347389 probable galacturonosyltransferase 4 4347389 Os09g0480400 14.40 LOC4345805 uncharacterized LOC4345805 4345805 Os08g0471800 14.33 LOC4338585 uncharacterized LOC4338585 4338585 Os05g0371100 14.32 LOC4339165 uncharacterized LOC4339165 4339165 Os05g0490400 14.32 LOC4334272 kinesin-like protein KIN-8B 4334272 Os03g0773600 14.27 LOC4344291 uncharacterized LOC4344291 4344291 Os07g0679400 14.27 LOC107282091 glutathione S-transferase T3 107282091 14.27 LOC4347805 protein PLASTID MOVEMENT IMPAIRED 1 4347805 Os09g0553900 14.26 LOC9266450 uncharacterized LOC9266450 9266450 Os06g0174375 14.24 LOC4346017 3-hydroxy-3-methylglutaryl-coenzyme A reductase 3-like 4346017 OSNPB_080512700 14.17 LOC4327187 pentatricopeptide repeat-containing protein At5g25630 4327187 Os01g0228400 14.15 LOC4342285 receptor kinase-like protein Xa21 4342285 Os07g0121200 14.13 LOC4333949 hapless 2 4333949 Os03g0723400 14.07 LOC4332782 peroxidase 70 4332782 Os03g0339300 14.05 LOC4339757 uncharacterized LOC4339757 4339757 Os05g0586400 14.00 LOC9268807 tryptophan synthase alpha chain 9268807 Os03g0797500 14.00 LOC4340940 probable xyloglucan endotransglucosylase/hydrolase protein 26 4340940 Os06g0335975 13.99 LOC4352404 uncharacterized LOC4352404 4352404 13.97 LOC4343085 TLD domain-containing protein 2 4343085 Os07g0438700 13.92 LOC9268302 uncharacterized LOC9268302 9268302 13.91 LOC4342824 guanosine deaminase 4342824 Os07g0245100 13.90 LOC4343388 abnormal spindle-like microcephaly-associated protein homolog 4343388 Os07g0517400 13.85 LOC4332809 uncharacterized LOC4332809 4332809 Os03g0344700 13.83	Upper 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC4334965 uncharacterized LOC4334965 4334965 Os04g0119000 30.66 LOC4349239 protein CURVATURE THYLAKOID 1B, chloroplastic 4349239 Os10g0536500 27.60 LOC4331301 cortical cell-delineating protein 4331301 Os03g0103100 26.61 LOC4328040 probable inactive linolenate hydroperoxide lyase 4328040 Os02g0110200 26.45 LOC4335805 non-specific lipid-transfer protein 4335805 Os04g0415800 25.46 LOC4337388 chaperone protein dnaJ C76, chloroplastic 4337388 Os04g0675400 23.89 LOC4343262 photosynthetic NDH subunit of subcomplex B 3, chloroplastic 4343262 Os07g0489800 23.79 LOC4337097 anthocyanidin reductase ((2S)-flavan-3-ol-forming) 4337097 Os04g0630400 23.79 LOC4351528 uncharacterized LOC4351528 4351528 Os12g0153200 23.33 LOC4337548 polygalacturonase inhibitor-like 4337548 23.32 LOC4340867 uncharacterized LOC4340867 4340867 23.26 LOC4335136 acetylserotonin O-methyltransferase 1-like 4335136 Os04g0196200 23.02 LOC4347709 ribonuclease 1 4347709 Os09g0538000 23.00 LOC4342432 peroxidase 2 4342432 Os07g0156200 22.94 LOC4339227 scopoletin glucosyltransferase 4339227 Os05g0500000 22.85 LOC4345406 uncharacterized LOC4345406 4345406 Os08g0371200 22.35 LOC4334093 uncharacterized LOC4334093 4334093 Os03g0746900 22.16 LOC4331302 cortical cell-delineating protein 4331302 Os03g0103200 22.15 LOC9266828 uncharacterized LOC9266828 9266828 22.08 LOC4348095 cytochrome P450 76C2 4348095 Os10g0144700 22.04 LOC4344281 uncharacterized LOC4344281 4344281 Os07g0677500 22.01 LOC4333649 alpha-amylase/trypsin inhibitor 4333649 Os03g0663500 21.84 LOC4337232 peroxidase 4 4337232 Os04g0651000 21.67 LOC107277105 protein LURP-one-related 2 107277105 Os07g0672600 21.64 LOC107278337 uncharacterized LOC107278337 107278337 Os05g0482501 21.51 LOC4327184 cytochrome P450 71A1 4327184 Os01g0227800 21.35 LOC112936844 uncharacterized LOC112936844 112936844 20.96 LOC4337768 uncharacterized LOC4337768 4337768 Os05g0142200 20.85 LOC4344264 phylloplanin 4344264 Os07g0674600 20.77 LOC107277388 uncharacterized LOC107277388 107277388 20.75 LOC4330704 photosynthetic NDH subunit of subcomplex B 4, chloroplastic 4330704 Os02g0744000 20.73 LOC4327401 probable 2-oxoglutarate-dependent dioxygenase At5g05600 4327401 Os01g0832600 20.65 LOC4340946 primary amine oxidase 2 4340946 Os06g0338700 20.60 LOC4334013 uncharacterized LOC4334013 4334013 Os03g0734100 20.56 LOC4327297 stem 28 kDa glycoprotein 4327297 Os01g0191200 20.53 LOC4333794 germin-like protein 3-6 4333794 OSNPB_030694000 20.45 LOC4330349 protein REVEILLE 1 4330349 Os02g0685200 20.43 LOC4333623 cytochrome P450 87A3-like 4333623 Os03g0658800 20.40 LOC4341024 protein POOR HOMOLOGOUS SYNAPSIS 1 4341024 Os06g0473000 20.37 LOC4333648 protein P21 4333648 Os03g0663400 20.35 LOC107278038 transcription factor ILI1 107278038 OSNPB_040641700 20.31 LOC4336431 gibberellin 2-beta-dioxygenase 6-like 4336431 Os04g0522500 20.27 LOC4344203 momilactone A synthase-like 4344203 Os07g0664200 20.18 LOC4333011 metacaspase-2 4333011 Os03g0389100 20.18 LOC4332705 WUSCHEL-related homeobox 6-like 4332705 OSNPB_030325600 20.04 LOC4339039 uncharacterized LOC4339039 4339039 Os05g0464200 20.03 LOC9267250 photosynthetic NDH subunit of lumenal location 1, chloroplastic 9267250 Os03g0279950 19.91 LOC4325528 WAT1-related protein At5g64700 4325528 Os01g0208000 19.86 LOC4351911 laccase-25-like 4351911 Os12g0257600 19.85 LOC4339648 50S ribosomal protein L12, chloroplastic-like 4339648 Os05g0568300 19.83 LOC4327980 GDSL esterase/lipase EXL3 4327980 Os02g0101400 19.67 LOC4325949 probable esterase KAI2 4325949 Os01g0595600 19.62 LOC4346391 cyclase-like protein 4 4346391 Os09g0110300 19.57 LOC4326229 flowering-promoting factor 1-like protein 1 4326229 OSNPB_010257300 19.57 LOC4336263 chitinase 4-like 4336263 Os04g0493600 19.56 LOC4350823 barwin 4350823 Os11g0592200 19.36 LOC4343580 transcription factor MYB102 4343580 Os07g0558100 19.29 LOC4339040 uncharacterized LOC4339040 4339040 19.27 LOC4349267 chitinase 8-like 4349267 OSNPB_100542900 19.23 LOC4332831 alpha-humulene synthase 4332831 Os03g0348200 19.22 LOC4352858 alpha-amylase/trypsin inhibitor 4352858 Os12g0630500 19.18 LOC4324167 anthocyanidin 5,3-O-glucosyltransferase 4324167 Os01g0735300 19.17 LOC4335744 desiccation-related protein PCC13-62 4335744 Os04g0404400 19.12 LOC9268689 pathogenesis-related protein PRB1-2 9268689 Os07g0125201 19.03 LOC107277171 pathogenesis-related protein PRB1-2 107277171 Os07g0126100 18.99 LOC107280253 myb-related protein P 107280253 18.98 LOC4329766 photosynthetic NDH subunit of lumenal location 2, chloroplastic 4329766 Os02g0578400 18.95 LOC4333793 germin-like protein 3-5 4333793 OSNPB_030693900 18.90 LOC4339836 cytochrome P450 93G2-like 4339836 Os06g0102100 18.87 LOC9266251 gibberellin 2-beta-dioxygenase 6-like 9266251 Os02g0630300 18.80 LOC4348520 uncharacterized LOC4348520 4348520 Os10g0389500 18.80 LOC4332883 probable galacturonosyltransferase-like 4 4332883 Os03g0359600 18.78 LOC107280050 uncharacterized LOC107280050 107280050 18.78 LOC4351766 zinc-finger homeodomain protein 3 4351766 OSNPB_120208900 18.64 LOC4325998 Bowman-Birk type bran trypsin inhibitor 4325998 Os01g0123900 18.57 LOC4326391 transcription factor PCL1-like 4326391 OSNPB_010971800 18.55 LOC4330678 uncharacterized LOC4330678 4330678 Os02g0740500 18.50 LOC4350821 barwin 4350821 Os11g0592000 18.48 LOC4347994 acetylserotonin O-methyltransferase 2-like 4347994 18.48 LOC4341627 cytochrome P450 71D7 4341627 Os06g0641200 18.44 LOC4342192 photosynthetic NDH subunit of lumenal location 3, chloroplastic 4342192 Os07g0105600 18.43 LOC107275732 glutamate receptor 2.9 107275732 Os06g0188700 18.40 LOC4342003 non-specific lipid-transfer protein 2P 4342003 Os06g0705400 18.38 LOC4336711 cytochrome P450 87A3-like 4336711 Os04g0570500 18.34 LOC4333865 peptidyl-prolyl cis-trans isomerase FKBP17-2, chloroplastic 4333865 Os03g0708500 18.31 LOC4333184 uncharacterized isomerase BH0283 4333184 Os03g0434400 18.30 LOC4348172 geraniol 8-hydroxylase 4348172 Os10g0166600 18.28 LOC4349881 ethylene-responsive transcription factor ERF110 4349881 Os11g0168500 18.24 LOC9269026 PAN domain-containing protein At5g03700 9269026 Os11g0149900 18.15 LOC9267582 probable L-type lectin-domain containing receptor kinase S.5 9267582 Os04g0584100 18.14 LOC4343826 putative anthocyanidin reductase 4343826 Os07g0601900 18.12 LOC107281673 uncharacterized LOC107281673 107281673 18.08 LOC4341858 early nodulin-like protein 1 4341858 Os06g0681200 17.98 LOC4324032 plastidal glycolate/glycerate translocator 1, chloroplastic 4324032 Os01g0511600 17.92 LOC4339670 ethylene-responsive transcription factor ERF061 4339670 Os05g0572000 17.86 LOC4339131 cytochrome P450 714D1-like 4339131 OSNPB_050482400 17.85 LOC4325999 Bowman-Birk type bran trypsin inhibitor 4325999 Os01g0124000 17.83 LOC4326932 bifunctional nuclease 1-like 4326932 OSNPB_010702000 17.78 LOC4336779 uncharacterized LOC4336779 4336779 Os04g0583900 17.77 LOC4352857 protein P21 4352857 Os12g0630200 17.75	Upper 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC4324218 dnaJ homolog subfamily B member 7 4324218 Os01g0606900 29.69 LOC4351087 uncharacterized LOC4351087 4351087 Os11g0670900 27.85 LOC4343997 E3 ubiquitin-protein ligase SIRP1-like 4343997 Os07g0631200 26.78 LOC9269734 lysine-specific demethylase JMJ30 9269734 Os08g0508500 26.72 LOC4346229 heat stress transcription factor B-2b-like 4346229 OSNPB_080546800 26.19 LOC4350698 adagio-like protein 3 4350698 OSNPB_110547000 25.76 LOC4347106 keratin-associated protein 6-2 4347106 Os09g0425200 25.23 LOC9268106 EID1-like F-box protein 3 9268106 Os05g0494600 24.57 LOC107278263 uncharacterized LOC107278263 107278263 Os02g0674233 24.31 LOC4343748 GDSL esterase/lipase At3g26430 4343748 Os07g0586100 23.94 LOC4332895 alpha-humulene synthase 4332895 Os03g0362500 23.76 LOC4343443 thiamine thiazole synthase 2, chloroplastic 4343443 Os07g0529600 23.73 LOC4343441 isocitrate lyase-like 4343441 OSNPB_070529000 23.71 LOC4323914 protein DOG1-like 4 4323914 Os01g0306400 23.54 LOC4342003 non-specific lipid-transfer protein 2P 4342003 Os06g0705400 23.44 LOC4324947 uncharacterized LOC4324947 4324947 Os01g0872100 22.69 LOC4333363 ent-isokaurene C2/C3-hydroxylase-like 4333363 Os03g0593600 22.50 LOC4332570 chaperone protein DnaJ 4332570 Os03g0300600 22.42 LOC4347535 zinc finger protein CONSTANS-LIKE 14 4347535 Os09g0509700 22.39 LOC4335526 (+)-germacrene D synthase 4335526 Os04g0344100 22.12 LOC4351147 uncharacterized LOC4351147 4351147 Os11g0687200 21.94 LOC9272344 3-ketoacyl-CoA synthase 6 9272344 21.73 LOC4331342 NAC transcription factor 32 4331342 Os03g0109000 21.69 LOC107278221 probable inactive receptor kinase At5g16590 107278221 21.62 LOC4350452 dehydrin Rab16C-like 4350452 OSNPB_110454000 21.50 LOC4328530 cytochrome P450 71D7 4328530 Os02g0184700 21.31 LOC4338883 gibberellin-regulated protein 2 4338883 Os05g0432200 21.14 LOC4347195 uncharacterized LOC4347195 4347195 Os09g0444900 20.77 LOC4325697 16.9 kDa class I heat shock protein 1-like 4325697 OSNPB_010136100 20.68 LOC4329573 Pectinesterase inhibitor 8 4329573 OSNPB_020537000 20.45 LOC4333121 chitinase 12 4333121 OSNPB_030418000 20.37 LOC107280166 uncharacterized LOC107280166 107280166 20.37 LOC4349169 probable glutathione S-transferase GSTU6 4349169 20.32 LOC4325587 alliin lyase 4325587 Os01g0717400 20.28 LOC4342322 uncharacterized LOC4342322 4342322 Os07g0130200 20.18 LOC4352537 transcription factor JAMYB-like 4352537 Os12g0564100 19.87 LOC4336263 chitinase 4-like 4336263 Os04g0493600 19.52 LOC4324827 uncharacterized LOC4324827 4324827 Os01g0855200 19.24 LOC4325696 16.9 kDa class I heat shock protein 3-like 4325696 OSNPB_010136000 19.21 LOC9269955 uncharacterized LOC9269955 9269955 Os08g0444440 19.20 LOC4337415 protochlorophyllide reductase A, chloroplastic-like 4337415 OSNPB_040678700 19.09 LOC9266682 cytochrome P450 84A1 9266682 Os06g0349700 19.05 LOC9271248 uncharacterized LOC9271248 9271248 18.92 LOC9269182 putative disease resistance protein RGA3 9269182 Os11g0494100 18.89 LOC4345968 tonoplast dicarboxylate transporter 4345968 Os08g0503700 18.87 LOC4336494 salutaridine reductase 4336494 Os04g0531900 18.85 LOC4331753 uncharacterized LOC4331753 4331753 Os03g0168300 18.77 LOC4335841 monooxygenase 2 4335841 Os04g0423100 18.75 LOC4340455 WAT1-related protein At1g21890 4340455 Os06g0210000 18.75 LOC4351146 uncharacterized LOC4351146 4351146 Os11g0687100 18.73 LOC4333605 plant cysteine oxidase 3 4333605 Os03g0654700 18.61 LOC4325791 calvin cycle protein CP12-1, chloroplastic 4325791 Os01g0303000 18.61 LOC107276434 uncharacterized LOC107276434 107276434 Os12g0277900 18.40 LOC4335011 uncharacterized LOC4335011 4335011 Os04g0136700 18.37 LOC4336355 transcription factor WER 4336355 Os04g0508500 18.34 LOC107275279 probable E3 ubiquitin-protein ligase ATL45 107275279 Os06g0534900 18.32 LOC107276157 xyloglucan endotransglucosylase/hydrolase protein 31 107276157 Os02g0823700 18.30 LOC4337388 chaperone protein dnaJ C76, chloroplastic 4337388 Os04g0675400 18.30 LOC4340952 late embryogenesis abundant protein D-34 4340952 Os06g0341300 18.18 LOC107280774 uncharacterized LOC107280774 107280774 18.12 LOC4328677 UDP-glycosyltransferase 73C3 4328677 Os02g0206100 18.11 LOC4330775 7-deoxyloganetin glucosyltransferase 4330775 Os02g0755900 18.08 LOC4352857 protein P21 4352857 Os12g0630200 18.06 LOC4327177 uncharacterized LOC4327177 4327177 Os01g0660900 17.97 LOC4350453 dehydrin Rab16B-like 4350453 OSNPB_110454200 17.96 LOC4336765 protein DMR6-LIKE OXYGENASE 1 4336765 Os04g0581100 17.94 LOC107280710 uncharacterized LOC107280710 107280710 17.93 LOC4346387 uncharacterized LOC4346387 4346387 Os09g0109600 17.91 LOC4334182 isoflavone 2'-hydroxylase 4334182 Os03g0760000 17.88 LOC4331569 noroxomaritidine synthase 4331569 Os03g0140200 17.87 LOC9267349 probable inorganic phosphate transporter 1-10 9267349 OSNPB_060325200 17.81 LOC4325681 LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1 4325681 Os01g0138400 17.74 LOC107278261 E3 ubiquitin-protein ligase EL5-like 107278261 Os02g0249200 17.73 LOC112939616 uncharacterized LOC112939616 112939616 17.73 LOC4348527 phosphoinositide phosphatase SAC2 4348527 Os10g0390900 17.72 LOC4346066 uncharacterized LOC4346066 4346066 Os08g0520600 17.69 LOC9271087 uncharacterized LOC9271087 9271087 17.68 LOC4334643 uncharacterized LOC4334643 4334643 Os03g0826800 17.65 LOC107280775 uncharacterized LOC107280775 107280775 17.62 LOC4351887 PYK10-binding protein 1 4351887 Os12g0247700 17.55 LOC4352404 uncharacterized LOC4352404 4352404 17.50 LOC4340919 jasmonate O-methyltransferase 4340919 Os06g0329900 17.48 LOC9269211 translation initiation factor IF-2-like 9269211 17.44 LOC4346556 cytochrome P450 71A1 4346556 Os09g0264400 17.43 LOC4330542 anthranilate O-methyltransferase 1 4330542 Os02g0719600 17.43 LOC4347593 UDP-glucosyltransferase UGT13248 4347593 Os09g0518200 17.39 LOC9266310 uncharacterized LOC9266310 9266310 17.35 LOC107277478 probable high-affinity nitrate transporter 2.4 107277478 OSNPB_010547600 17.33 LOC4339688 forkhead box protein L2 4339688 Os05g0575000 17.29 LOC107276827 G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 107276827 Os04g0475200 17.24 LOC4352489 major pollen allergen Bet v 1-G 4352489 Os12g0555300 17.10 LOC4331855 uncharacterized LOC4331855 4331855 Os03g0184100 17.05 LOC4342731 ent-cassadiene hydroxylase-like 4342731 Os07g0217600 17.03 LOC4332597 outer envelope pore protein 16-2, chloroplastic 4332597 Os03g0305600 17.03 LOC4333068 probable E3 ubiquitin-protein ligase EDA40 4333068 Os03g0403600 16.92 LOC4347592 UDP-glycosyltransferase 79-like 4347592 Os09g0518000 16.92 LOC4350055 alcohol dehydrogenase 2 4350055 Os11g0210600 16.92 LOC4326727 uncharacterized LOC4326727 4326727 16.83 LOC4333719 phosphomethylpyrimidine synthase, chloroplastic 4333719 Os03g0679700 16.79 LOC112938707 uncharacterized LOC112938707 112938707 16.78	Upper 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC4348272 proline-rich protein 4 4348272 Os10g0205700 26.12 LOC4352104 thiosulfate sulfurtransferase 18 4352104 Os12g0428000 25.33 LOC4350454 water stress-inducible protein Rab21-like 4350454 OSNPB_110454300 25.33 LOC4334644 uncharacterized LOC4334644 4334644 Os03g0826900 24.19 LOC4351498 uncharacterized LOC4351498 4351498 Os12g0147200 24.15 LOC4346066 uncharacterized LOC4346066 4346066 Os08g0520600 22.26 LOC4332357 17.9 kDa class I heat shock protein-like 4332357 OSNPB_030266300 21.20 LOC4336769 heavy metal-associated isoprenylated plant protein 28 4336769 Os04g0581800 20.07 LOC9270608 uncharacterized LOC9270608 9270608 Os11g0533400 20.06 LOC4330933 18.6 kDa class III heat shock protein-like 4330933 OSNPB_020782500 19.82 LOC9269955 uncharacterized LOC9269955 9269955 Os08g0444440 19.20 LOC4341783 uncharacterized LOC4341783 4341783 Os06g0666800 19.08 LOC4337936 universal stress protein PHOS32 4337936 Os05g0170200 19.02 LOC4335805 non-specific lipid-transfer protein 4335805 Os04g0415800 18.89 LOC4340661 16.0 kDa heat shock protein, peroxisomal-like 4340661 OSNPB_060253100 18.81 LOC4342106 thiosulfate sulfurtransferase 16, chloroplastic 4342106 Os06g0725000 18.57 LOC4347106 keratin-associated protein 6-2 4347106 Os09g0425200 18.50 LOC4340120 uncharacterized LOC4340120 4340120 Os06g0147100 18.42 LOC4334643 uncharacterized LOC4334643 4334643 Os03g0826800 18.15 LOC107276047 photosystem II 10 kDa polypeptide, chloroplastic 107276047 Os07g0147550 18.06 LOC4350431 uncharacterized LOC4350431 4350431 Os11g0444700 17.94 LOC4349062 low-temperature-induced 65 kDa protein 4349062 Os10g0505900 17.84 LOC4345889 bZIP transcription factor RISBZ3-like 4345889 Os08g0487100 17.83 LOC4350542 uncharacterized LOC4350542 4350542 Os11g0490300 17.73 LOC4350453 dehydrin Rab16B-like 4350453 OSNPB_110454200 17.72 LOC4330953 pathogenesis-related protein PRB1-3 4330953 Os02g0786900 17.69 LOC4350540 probable methyltransferase At1g27930 4350540 Os11g0490100 17.55 LOC4344438 uncharacterized LOC4344438 4344438 Os08g0104400 17.49 LOC9269735 putative dihydroflavonol 4-reductase 9269735 Os03g0184550 17.46 LOC4333977 uncharacterized LOC4333977 4333977 Os03g0727800 17.41 LOC4325734 glutaredoxin-C1-like 4325734 OSNPB_010368900 17.31 LOC4328581 protein GLUTAMINE DUMPER 6 4328581 Os02g0191800 17.31 LOC4341925 acetylajmalan esterase 4341925 Os06g0694200 17.27 LOC4346051 xylanase inhibitor protein 2-like 4346051 Os08g0518800 17.22 LOC4325912 uncharacterized LOC4325912 4325912 Os01g0644200 17.19 LEA19 late embryogenesis abundant protein 19-like 4339480 OSNPB_050542500 17.14 LOC4349779 uncharacterized LOC4349779 4349779 Os11g0149200 17.11 LOC4337415 protochlorophyllide reductase A, chloroplastic-like 4337415 OSNPB_040678700 17.08 LOC4341420 multiprotein-bridging factor 1c 4341420 Os06g0592500 17.04 LOC4339887 late embryogenesis abundant protein 6 4339887 Os06g0110200 17.02 LOC4332688 late embryogenesis abundant protein 17-like 4332688 OSNPB_030322900 16.80 LOC4336427 uncharacterized LOC4336427 4336427 Os04g0521700 16.65 LOC4333882 zinc finger protein CONSTANS-LIKE 16 4333882 Os03g0711100 16.61 LOC4328369 SNF1-related protein kinase regulatory subunit gamma-like PV42a 4328369 Os02g0158900 16.48 LOC107278328 uncharacterized LOC107278328 107278328 16.45 LOC4345700 glycine-rich cell wall structural protein 4345700 Os08g0442900 16.44 LOC9270637 ferredoxin, root R-B1 9270637 Os01g0860601 16.42 LOC4324639 uncharacterized LOC4324639 4324639 Os01g0219300 16.41 LOC4346387 uncharacterized LOC4346387 4346387 Os09g0109600 16.18 LOC4325696 16.9 kDa class I heat shock protein 3-like 4325696 OSNPB_010136000 16.17 LOC4350451 dehydrin Rab16D-like 4350451 OSNPB_110453900 16.16 LOC4351185 xylanase inhibitor protein 1-like 4351185 Os11g0700900 16.16 LOC107277509 uncharacterized LOC107277509 107277509 Os05g0586050 16.16 LOC4332745 photosystem II repair protein PSB27-H1, chloroplastic 4332745 Os03g0333400 16.10 LOC4329812 glycine-rich cell wall structural protein 4329812 Os02g0586900 15.95 LOC4335656 uncharacterized LOC4335656 4335656 Os04g0386700 15.85 LOC4352329 polyol transporter 5 4352329 Os12g0512100 15.83 LOC4348490 transcription factor bHLH96 4348490 Os10g0376900 15.71 LOC4338611 lichenase-2 4338611 Os05g0375400 15.71 LOC4331751 late embryogenesis abundant protein, group 3 4331751 Os03g0168100 15.71 LOC4342135 protein REVEILLE 1 4342135 Os06g0728700 15.69 LOC4335075 uncharacterized LOC4335075 4335075 Os04g0175400 15.52 LOC4347637 heat stress transcription factor B-2c-like 4347637 OSNPB_090526600 15.50 LOC4339595 transcription factor TGA9 4339595 Os05g0560200 15.50 LOC4343119 aquaporin PIP2-4-like 4343119 OSNPB_070448100 15.45 LOC4331013 ethylene-responsive transcription factor ERF003 4331013 Os02g0797100 15.37 LOC4340563 ATP-dependent zinc metalloprotease FTSH 6, chloroplastic-like 4340563 Os06g0229000 15.30 LOC4332123 non-symbiotic hemoglobin 2-like 4332123 OSNPB_030226200 15.29 LOC4350433 uncharacterized LOC4350433 4350433 Os11g0444900 15.29 LOC4332887 transcription termination factor MTEF1, chloroplastic 4332887 Os03g0360600 15.26 LOC4336179 cytochrome P450 71A9 4336179 Os04g0480700 15.24 LOC4326862 uncharacterized LOC4326862 4326862 Os01g0666600 15.20 LOC9271230 Bowman-Birk type bran trypsin inhibitor-like 9271230 Os01g0124400 15.20 LOC4348336 UPF0301 protein TC_0483 4348336 Os10g0330400 15.17 LOC4327719 protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial 4327719 Os01g0256500 15.12 LOC9267696 F-box/kelch-repeat protein At1g80440 9267696 Os02g0208700 15.11 LOC4332439 uncharacterized LOC4332439 4332439 Os03g0280400 14.98 LOC4351831 protein NRT1/ PTR FAMILY 4.6 4351831 Os12g0231000 14.71 LOC4328809 heat stress transcription factor C-2a-like 4328809 OSNPB_020232000 14.70 LOC107276394 coiled-coil domain-containing protein 124 107276394 Os03g0131800 14.70 LOC4348840 beta-amylase 1, chloroplastic-like 4348840 Os10g0465900 14.68 LOC4352425 putative glutaredoxin-C14 4352425 OSNPB_120538600 14.60 LOC4339728 uncharacterized LOC4339728 4339728 Os05g0581700 14.56 LOC4343121 aquaporin PIP2-5-like 4343121 OSNPB_070448400 14.51 LOC4332137 uncharacterized protein At1g01500 4332137 Os03g0228200 14.50 LOC4333418 peamaclein 4333418 Os03g0607200 14.46 LOC107281724 uncharacterized LOC107281724 107281724 14.45 LOC4330786 24.1 kDa heat shock protein, mitochondrial-like 4330786 OSNPB_020758000 14.43 LOC4331521 uncharacterized LOC4331521 4331521 Os03g0133100 14.41 LOC4333826 pre-mRNA-splicing factor 18 4333826 Os03g0701100 14.40 LOC4338037 zinc finger CCCH domain-containing protein 35-like 4338037 OSNPB_050195200 14.37 LOC9268386 uncharacterized LOC9268386 9268386 14.33 LOC9266978 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic 9266978 Os05g0105800 14.32 LOC4341308 abscisic acid receptor PYL9-like 4341308 Os06g0562200 14.32 LOC112936899 uncharacterized LOC112936899 112936899 Os11g0181200 14.31 LOC4324479 oxygen-evolving enhancer protein 1, chloroplastic 4324479 Os01g0501800 14.27 LOC112939385 uncharacterized LOC112939385 112939385 14.26 LOC112936815 uncharacterized LOC112936815 112936815 14.26 LOC4345453 uncharacterized LOC4345453 4345453 Os08g0385000 14.20 LOC4332237 26.7 kDa heat shock protein, chloroplastic-like 4332237 OSNPB_030245800 14.17
Lower 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC9267846 GDSL esterase/lipase At5g45670 9267846 Os01g0728100 -42.60 LOC4348874 3-ketoacyl-CoA synthase 12 4348874 Os10g0472900 -42.30 LOC4340000 LRR receptor-like serine/threonine-protein kinase ERL1 4340000 Os06g0130100 -41.55 LOC4350728 long chain acyl-CoA synthetase 2 4350728 Os11g0558300 -41.19 LOC4343628 putative cell wall protein 4343628 Os07g0565800 -41.18 LOC4351317 non-specific lipid-transfer protein 2B-like 4351317 OSNPB_120115000 -40.87 LOC4342449 protein YABBY 1-like 4342449 OSNPB_070160100 -40.86 LOC4330149 aldehyde dehydrogenase family 3 member F1 4330149 Os02g0647900 -40.41 LOC4335613 ER lumen protein-retaining receptor 4335613 Os04g0376700 -40.01 LOC4338133 ABC transporter G family member 12 4338133 Os05g0222200 -39.88 LOC4331874 aspartyl protease 25-like 4331874 Os03g0186900 -39.84 LOC4336648 cytochrome P450 86A8 4336648 Os04g0560100 -39.67 LOC4330250 cytochrome P450 86A2 4330250 Os02g0666500 -39.43 LOC4331730 beta-galactosidase 5-like 4331730 OSNPB_030165400 -39.26 LOC4330390 ABC transporter B family member 2 4330390 Os02g0693700 -39.02 LOC4331336 probable xyloglucan endotransglucosylase/hydrolase protein 32 4331336 Os03g0108300 -38.99 LOC4349561 protein trichome birefringence-like 34 4349561 Os11g0107000 -38.93 LOC4350420 probable apyrase 3 4350420 Os11g0439600 -38.77 LOC4328585 glucomannan 4-beta-mannosyltransferase 1-like 4328585 OSNPB_020192500 -38.75 LOC4351144 disease resistance protein RGA5-like 4351144 Os11g0686900 -38.74 LOC4350464 neurofilament medium polypeptide 4350464 Os11g0458100 -38.68 LOC4348020 MEIOTIC F-BOX protein MOF-like 4348020 Os10g0126700 -38.66 LOC4351315 non-specific lipid-transfer protein 3-like 4351315 Os12g0114800 -38.55 LOC4340691 3-ketoacyl-CoA synthase 6 4340691 Os06g0260500 -38.48 LOC4352721 auxin-responsive protein IAA30-like 4352721 OSNPB_120601300 -38.47 LOC4340427 LRR receptor-like serine/threonine-protein kinase ERECTA 4340427 Os06g0203800 -38.42 LOC4348120 proline-rich protein 4 4348120 Os10g0150400 -38.34 LOC107275673 DNA replication licensing factor MCM4-like 107275673 OSNPB_010544450 -38.26 LOC4350880 uncharacterized LOC4350880 4350880 -38.15 LOC9267894 non-specific lipid-transfer protein 2 9267894 Os11g0115350 -38.14 LOC9266065 serine carboxypeptidase-like 45 9266065 Os11g0522900 -38.11 LOC4330905 LRR receptor-like serine/threonine-protein kinase ERECTA 4330905 OSNPB_020777400 -38.11 LOC4345721 uncharacterized LOC4345721 4345721 -38.05 LOC4350679 uncharacterized protein At3g49140 4350679 Os11g0544000 -38.01 LOC4333584 protein YABBY 2-like 4333584 OSNPB_030650000 -37.98 LOC4350399 very-long-chain 3-oxoacyl-CoA reductase-like protein At1g24470 4350399 Os11g0432600 -37.96 LOC4351267 protein trichome birefringence-like 34 4351267 Os12g0106300 -37.94 LOC4349889 long chain acyl-CoA synthetase 9, chloroplastic 4349889 Os11g0169800 -37.91 LOC4345123 sister chromatid cohesion 1 protein 3 4345123 Os08g0266700 -37.89 LOC4339944 aspartyl protease family protein At5g10770 4339944 Os06g0119600 -37.87 LOC4349601 non-specific lipid-transfer protein 3-like 4349601 OSNPB_110115100 -37.86 LOC4350421 probable apyrase 3 4350421 Os11g0440200 -37.85 LOC4337248 probable receptor-like serine/threonine-protein kinase At5g57670 4337248 Os04g0654600 -37.78 LOC112938725 uncharacterized LOC112938725 112938725 -37.76 LOC4341847 L-ascorbate oxidase homolog 4341847 Os06g0678800 -37.59 LOC4329618 probable serine/threonine-protein kinase At1g01540 4329618 Os02g0549200 -37.57 LOC4325916 zinc finger CCCH domain-containing protein 9-like 4325916 OSNPB_010645000 -37.55 LOC9269109 uncharacterized LOC9269109 9269109 Os04g0382800 -37.54 LOC112939726 uncharacterized LOC112939726 112939726 -37.53 LOC4340592 protein ALTERED XYLOGLUCAN 4-like 4340592 Os06g0234600 -37.39 LOC4345513 protein HOTHEAD 4345513 Os08g0401500 -37.38 LOC4334758 GDSL esterase/lipase At3g48460 4334758 Os03g0844600 -37.34 LOC4345694 AUGMIN subunit 8 4345694 Os08g0442000 -37.31 LOC9271780 reticulon-like protein B12 9271780 Os01g0851300 -37.31 LOC4324106 65-kDa microtubule-associated protein 3 4324106 Os01g0685900 -37.30 LOC4333272 uncharacterized LOC4333272 4333272 Os03g0566600 -37.29 LOC4349023 microtubule-associated protein RP/EB family member 1C 4349023 Os10g0498900 -37.29 LOC4352231 lysine histidine transporter-like 8 4352231 Os12g0485600 -37.28 LOC4332400 laccase-10-like 4332400 OSNPB_030273200 -37.26 LOC4338095 protein timeless homolog 4338095 Os05g0210500 -37.22 LOC4330213 expansin-B11-like 4330213 OSNPB_020658800 -37.20 LOC4323865 ABC transporter G family member 31-like 4323865 OSNPB_010177900 -37.19 LOC107278403 zinc finger protein 10 107278403 Os07g0101800 -37.17 LOC4339762 probable polygalacturonase 4339762 Os05g0587000 -37.14 LOC4352818 protein YABBY 6-like 4352818 OSNPB_120621100 -37.14 LOC4348347 probable protein S-acyltransferase 22 4348347 Os10g0337500 -37.08 LOC4331016 DNA replication licensing factor MCM5-like 4331016 OSNPB_020797400 -37.08 LOC4331091 KIN14B-interacting protein At4g14310 4331091 Os02g0809900 -37.07 LOC4329582 NDR1/HIN1-like protein 1 4329582 Os02g0538700 -37.06 LOC4335559 fatty acyl-CoA reductase 1 4335559 Os04g0353600 -37.06 LOC4332757 probable LRR receptor-like serine/threonine-protein kinase IRK 4332757 Os03g0335500 -37.03 LOC4331301 cortical cell-delineating protein 4331301 Os03g0103100 -37.02 LOC4342192 photosynthetic NDH subunit of lumenal location 3, chloroplastic 4342192 Os07g0105600 -36.99 LOC4339099 DNA replication licensing factor MCM3-like 4339099 OSNPB_050476200 -36.96 LOC4346688 uncharacterized LOC4346688 4346688 -36.94 LOC4325381 probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 4325381 Os01g0957100 -36.94 LOC4332778 uncharacterized LOC4332778 4332778 Os03g0338400 -36.90 LOC4338176 DNA replication licensing factor MCM6-like 4338176 OSNPB_050235800 -36.89 LOC4345595 mitogen-activated protein kinase kinase kinase NPK1 4345595 Os08g0421800 -36.86 LOC4343814 protein PELPK1 4343814 Os07g0599900 -36.86 LOC4338080 probable serine/threonine-protein kinase PBL7 4338080 Os05g0207700 -36.85 LOC4346327 protein WALLS ARE THIN 1 4346327 Os08g0561500 -36.83 LOC4330704 photosynthetic NDH subunit of subcomplex B 4, chloroplastic 4330704 Os02g0744000 -36.79 LOC4345270 uncharacterized LOC4345270 4345270 Os08g0323400 -36.71 LOC4341811 protein G1-like2 4341811 OSNPB_060672400 -36.69 LOC4329648 ultraviolet-B receptor UVR8 4329648 Os02g0554100 -36.68 LOC4348150 fibrous sheath CABYR-binding protein 4348150 Os10g0159600 -36.66 LOC4344583 protein CHUP1, chloroplastic 4344583 Os08g0129600 -36.66 LOC4325137 transcription factor PCF7-like 4325137 OSNPB_010755500 -36.66 LOC4336730 fasciclin-like arabinogalactan protein 8 4336730 Os04g0574200 -36.64 LOC4331138 CLIP-associated protein 4331138 Os02g0816300 -36.60 LOC4331836 3-ketoacyl-CoA synthase 10 4331836 Os03g0181500 -36.60 LOC4324341 uncharacterized LOC4324341 4324341 Os01g0914000 -36.60 LOC4330080 transcription factor TCP7 4330080 Os02g0635800 -36.59 LOC4328832 peroxidase P7 4328832 Os02g0236600 -36.58 LOC4351457 BTB/POZ domain and ankyrin repeat-containing protein NH5.2-like 4351457 OSNPB_120138500 -36.57 LOC4327633 LRR receptor-like serine/threonine-protein kinase 4327633 Os01g0170300 -36.53 LOC4352520 UDP-glycosyltransferase 91C1 4352520 Os12g0561900 -36.52 LOC4335648 uncharacterized LOC4335648 4335648 -36.51 LOC4342041 non-specific lipid-transfer protein 4342041 Os06g0711900 -36.49	Lower 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC4330226 14 kDa proline-rich protein DC2.15 4330226 Os02g0662000 -57.11 LOC4349331 cortical cell-delineating protein 4349331 Os10g0552800 -51.23 LOC4349329 14 kDa proline-rich protein DC2.15-like 4349329 -50.06 LOC4329734 myosin-2 heavy chain, non muscle 4329734 Os02g0572600 -49.60 LOC4347868 stem bromelain 4347868 Os09g0564200 -49.29 LOC9269196 cytochrome b561 and DOMON domain-containing protein At3g07570 9269196 Os01g0895300 -48.26 LOC4348237 pathogenesis-related protein PRB1-2 4348237 Os10g0191300 -48.20 LOC4348182 uncharacterized LOC4348182 4348182 Os10g0169200 -47.49 LOC4334521 dirigent protein 15 4334521 Os03g0809000 -47.49 LOC4331328 silicon efflux transporter LSI2-like 4331328 OSNPB_030107300 -47.36 LOC4342187 peroxidase 1-like 4342187 Os07g0104500 -46.97 LOC4337727 peroxidase 2 4337727 Os05g0134800 -46.93 LOC107277012 hypersensitive-induced response protein 1 107277012 Os01g0588100 -46.57 LOC4332922 peroxidase 2 4332922 Os03g0368000 -46.06 LOC4350054 alcohol dehydrogenase 2 4350054 OSNPB_110210500 -46.05 LOC4335846 peroxidase 72 4335846 Os04g0423800 -45.64 LOC4332923 peroxidase 2 4332923 Os03g0368300 -45.52 LOC4346988 probable cinnamyl alcohol dehydrogenase 8A 4346988 OSNPB_090399800 -45.38 LOC9270927 pathogenesis-related protein 1 9270927 Os07g0125500 -45.37 LOC9270523 putative glycine-rich cell wall structural protein 1 9270523 Os10g0454200 -45.35 LOC4331298 expansin-B8-like 4331298 OSNPB_030102500 -45.31 LOC4332910 GDSL esterase/lipase At1g28650 4332910 Os03g0365800 -45.23 LOC4324968 cytochrome b561 and DOMON domain-containing protein At3g07570 4324968 Os01g0895200 -45.22 LOC4346327 protein WALLS ARE THIN 1 4346327 Os08g0561500 -45.21 LOC4336615 14 kDa proline-rich protein DC2.15 4336615 Os04g0554600 -45.21 LOC4342189 blue copper protein 4342189 Os07g0105000 -45.09 LOC4330207 probable aquaporin TIP2-1 4330207 OSNPB_020658100 -45.07 LOC4326500 ervatamin-B 4326500 Os01g0347600 -45.05 LOC4325834 uncharacterized LOC4325834 4325834 Os01g0947000 -44.89 LOC4337453 casparian strip membrane protein 1-like 4337453 -44.85 LOC4337730 peroxidase 5 4337730 Os05g0135200 -44.78 LOC4352564 metallothionein-like protein 4B 4352564 Os12g0568500 -44.73 LOC4350388 basic blue protein 4350388 Os11g0428800 -44.72 LOC107277316 pathogenesis-related protein 1 107277316 Os07g0126301 -44.68 LOC4349293 silicon efflux transporter LSI3-like 4349293 Os10g0547500 -44.62 LOC4342310 pathogenesis-related protein 1 4342310 Os07g0124900 -44.52 LOC4336614 14 kDa proline-rich protein DC2.15 4336614 Os04g0554500 -44.42 LOC4350725 uncharacterized LOC4350725 4350725 Os11g0557800 -44.29 LOC4347027 uncharacterized LOC4347027 4347027 Os09g0409100 -44.29 LOC4337488 cationic peroxidase SPC4 4337488 Os04g0689000 -44.25 LOC4348342 dirigent protein 4 4348342 Os10g0335000 -44.24 LOC4349932 dirigent protein 2 4349932 Os11g0179700 -44.12 LOC4350385 adenine/guanine permease AZG2 4350385 Os11g0427700 -44.08 LOC4330974 cytochrome c oxidase subunit 6b-2 4330974 Os02g0791400 -43.95 LOC4336695 aluminum-activated malate transporter 10 4336695 Os04g0567200 -43.81 LOC4325984 multicopper oxidase LPR1 homolog 3-like 4325984 Os01g0127000 -43.78 LOC4344264 phylloplanin 4344264 Os07g0674600 -43.67 LOC4328052 high-affinity nitrate transporter 2.1-like 4328052 OSNPB_020112600 -43.67 LOC4325127 peroxidase 9 4325127 Os01g0263000 -43.55 LOC4331301 cortical cell-delineating protein 4331301 Os03g0103100 -43.45 LOC9270308 dirigent protein 1 9270308 Os10g0333700 -43.44 LOC4331438 peroxidase 5 4331438 Os03g0121300 -43.35 LOC4348783 putative glycine-rich cell wall structural protein 1 4348783 -43.21 LOC4331599 MDIS1-interacting receptor like kinase 1 4331599 Os03g0145102 -43.16 LOC4337728 peroxidase 2 4337728 Os05g0135000 -43.13 LOC4341368 putative receptor protein kinase ZmPK1 4341368 Os06g0575400 -43.08 LOC4325915 uncharacterized LOC4325915 4325915 Os01g0644900 -43.04 LOC4351917 laccase-25 4351917 Os12g0259800 -43.03 LOC4340140 cysteine synthase-like 4340140 Os06g0149700 -43.02 LOC4328065 transcription factor MYB24 4328065 Os02g0114800 -42.95 LOC9269026 PAN domain-containing protein At5g03700 9269026 Os11g0149900 -42.94 LOC4325841 uncharacterized LOC4325841 4325841 Os01g0550800 -42.90 LOC4338296 uncharacterized LOC4338296 4338296 Os05g0286100 -42.80 LOC4337726 peroxidase 2 4337726 Os05g0134700 -42.62 LOC4329943 uncharacterized LOC4329943 4329943 Os02g0609200 -42.60 LOC4326499 ervatamin-B 4326499 Os01g0347500 -42.58 LOC4336818 AT-hook motif nuclear-localized protein 23 4336818 Os04g0590200 -42.53 LOC4348786 putative glycine-rich cell wall structural protein 1 4348786 -42.50 LOC4351144 disease resistance protein RGA5-like 4351144 Os11g0686900 -42.47 LOC4343992 ribonuclease 1 4343992 Os07g0630400 -42.45 LOC4349327 cortical cell-delineating protein 4349327 Os10g0552300 -42.42 LOC4330341 cytosolic sulfotransferase 13 4330341 Os02g0684100 -42.39 LOC4344052 peroxidase 2 4344052 Os07g0639400 -42.35 LOC4347746 ornithine decarboxylase 4347746 Os09g0543400 -42.28 LOC4351918 momilactone A synthase-like 4351918 Os12g0260500 -42.15 LOC4328051 high-affinity nitrate transporter 2.1 4328051 OSNPB_020112100 -42.11 LOC4338279 expansin-A33 4338279 OSNPB_050277000 -42.06 LOC9271479 uncharacterized LOC9271479 9271479 Os04g0438200 -41.95 LOC9270378 probable L-type lectin-domain containing receptor kinase S.5 9270378 Os06g0328400 -41.86 LOC107277760 glycine-rich cell wall structural protein 107277760 Os02g0279851 -41.82 LOC4347963 peroxidase N 4347963 Os10g0109600 -41.74 LOC4345095 probable xyloglucan glycosyltransferase 3 4345095 OSNPB_080253800 -41.74 LOC4329459 uncharacterized LOC4329459 4329459 Os02g0512000 -41.67 LOC9271254 aquaporin TIP2-3-like 9271254 -41.67 LOC4345915 LRR receptor-like serine/threonine-protein kinase 4345915 Os08g0493800 -41.55 LOC4348779 putative glycine-rich cell wall structural protein 1 4348779 Os10g0453900 -41.52 LOC4341932 peroxidase 16 4341932 Os06g0695200 -41.49 LOC4324643 endoglucanase 2-like 4324643 OSNPB_010220100 -41.47 LOC9266177 enoyl-CoA delta isomerase 1, peroxisomal 9266177 Os11g0270000 -41.38 LOC4328049 MDIS1-interacting receptor like kinase 1 4328049 Os02g0111800 -41.35 LOC9267484 cortical cell-delineating protein 9267484 Os10g0552200 -41.32 LOC4349286 pistil-specific extensin-like protein 4349286 Os10g0546100 -41.25 LOC4352561 metallothionein-like protein 4C 4352561 Os12g0567800 -41.21 LOC4332924 peroxidase 2-like 4332924 -41.21 LOC4343309 peroxidase 7 4343309 Os07g0499500 -41.20 LOC4350260 enoyl-CoA delta isomerase 2, peroxisomal 4350260 Os11g0269900 -41.12 LOC4344051 peroxidase 2 4344051 Os07g0639000 -41.02 LOC107276584 quinone-oxidoreductase QR1, chloroplastic 107276584 Os04g0358000 -40.95 LOC107279011 putative glycine-rich cell wall structural protein 1 107279011 -40.85 LOC4326501 ervatamin-B 4326501 Os01g0348000 -40.84	Lower 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC4348121 proline-rich protein 4 4348121 Os10g0150600 -50.43 LOC4348120 proline-rich protein 4 4348120 Os10g0150400 -48.74 LOC4343628 putative cell wall protein 4343628 Os07g0565800 -47.71 LOC4327106 MFS18 protein 4327106 Os01g0251400 -46.39 LOC4348122 proline-rich protein 4 4348122 Os10g0150700 -45.52 LOC4348123 proline-rich protein 4 4348123 Os10g0150800 -44.25 LOC4336091 MLP-like protein 423 4336091 Os04g0465600 -44.20 LOC4349060 non-specific lipid-transfer protein 2P 4349060 Os10g0505500 -43.55 LOC4349601 non-specific lipid-transfer protein 3-like 4349601 OSNPB_110115100 -42.86 LOC4351315 non-specific lipid-transfer protein 3-like 4351315 Os12g0114800 -42.79 LOC4339334 GDSL esterase/lipase At5g45670 4339334 Os05g0518300 -42.59 LOC4331874 aspartyl protease 25-like 4331874 Os03g0186900 -42.46 LOC4345763 germin-like protein 8-14 4345763 OSNPB_080460000 -42.44 LOC4341274 protodermal factor 1 4341274 Os06g0553200 -42.39 LOC4348874 3-ketoacyl-CoA synthase 12 4348874 Os10g0472900 -42.10 LOC4331336 probable xyloglucan endotransglucosylase/hydrolase protein 32 4331336 Os03g0108300 -42.06 LOC4338023 acid phosphatase 1 4338023 Os05g0190500 -41.97 LOC9270480 non-specific lipid transfer protein GPI-anchored 2 9270480 Os01g0814100 -41.67 LOC4340691 3-ketoacyl-CoA synthase 6 4340691 Os06g0260500 -41.19 LOC4340259 36.4 kDa proline-rich protein 4340259 Os06g0168700 -40.94 LOC4329456 protein TAPETUM DETERMINANT 1 4329456 Os02g0511600 -40.67 LOC4330227 14 kDa proline-rich protein DC2.15 4330227 Os02g0662100 -40.63 LOC9269584 uncharacterized protein At4g06744 9269584 Os02g0616100 -40.58 LOC4327617 non-specific lipid-transfer protein 1 4327617 Os01g0822900 -40.46 LOC4327070 protodermal factor 1 4327070 Os01g0201600 -39.94 LOC9269151 acid phosphatase 1 9269151 Os05g0190300 -39.82 LOC4340818 very-long-chain 3-oxoacyl-CoA reductase 1 4340818 Os06g0299300 -39.63 LOC4340427 LRR receptor-like serine/threonine-protein kinase ERECTA 4340427 Os06g0203800 -38.97 LOC4325263 GDSL esterase/lipase At5g45910 4325263 Os01g0215700 -38.50 LOC4336089 gibberellin-regulated protein 14 4336089 Os04g0465300 -38.15 LOC4341639 36.4 kDa proline-rich protein 4341639 Os06g0643500 -38.05 LOC4324833 extradiol ring-cleavage dioxygenase 4324833 Os01g0878900 -37.80 LOC4349600 non-specific lipid-transfer protein 4-like 4349600 Os11g0114900 -37.77 LOC4350051 peroxidase 43 4350051 Os11g0210100 -37.52 LOC4340128 GDSL esterase/lipase APG 4340128 Os06g0148200 -37.47 LOC9267846 GDSL esterase/lipase At5g45670 9267846 Os01g0728100 -37.44 LOC4336616 pEARLI1-like lipid transfer protein 1 4336616 Os04g0554800 -37.42 LOC4336055 transcription factor MYB106 4336055 Os04g0461000 -37.36 LOC4332763 expansin-A6-like 4332763 OSNPB_030336400 -37.32 LOC4334511 uncharacterized LOC4334511 4334511 Os03g0807700 -37.30 LOC4329252 auxin-responsive protein SAUR50 4329252 Os02g0445100 -37.26 LOC4343091 glycine-rich cell wall structural protein 4343091 Os07g0440100 -37.06 LOC4348110 proline-rich protein 2 4348110 Os10g0148100 -37.02 LOC4346335 BAHD acyltransferase DCR 4346335 Os08g0562500 -36.84 LOC4348119 uncharacterized LOC4348119 4348119 Os10g0150300 -36.78 LOC4331741 protein YLS3 4331741 Os03g0167000 -36.76 LOC4337104 xyloglucan endotransglucosylase/hydrolase protein 9 4337104 Os04g0631200 -36.65 LOC4338021 acid phosphatase 1 4338021 Os05g0189300 -36.56 LOC4323946 3-ketoacyl-CoA synthase 5 4323946 Os01g0529800 -36.55 LOC4329121 fasciclin-like arabinogalactan protein 6 4329121 Os02g0308400 -36.46 LOC4341855 cytochrome P450 77A3 4341855 Os06g0680700 -36.45 LOC4339944 aspartyl protease family protein At5g10770 4339944 Os06g0119600 -36.38 LOC4348247 acyl transferase 1-like 4348247 Os10g0195600 -36.31 LOC4334758 GDSL esterase/lipase At3g48460 4334758 Os03g0844600 -36.21 LOC4335700 serine carboxypeptidase-like 45 4335700 Os04g0396800 -36.08 LOC4338820 GDSL esterase/lipase At1g71691 4338820 Os05g0419800 -35.95 LOC4336348 GDSL esterase/lipase LTL1 4336348 Os04g0507700 -35.95 LOC4331557 alkane hydroxylase MAH1 4331557 Os03g0138200 -35.85 LOC4349072 monocopper oxidase-like protein SKU5 4349072 -35.78 LOC4346153 bidirectional sugar transporter SWEET11-like 4346153 OSNPB_080535200 -35.77 LOC4346846 3-ketoacyl-CoA synthase 17 4346846 Os09g0360500 -35.67 LOC4348445 PLAT domain-containing protein 3 4348445 Os10g0361000 -35.57 LOC4342391 probable LRR receptor-like serine/threonine-protein kinase At4g20940 4342391 Os07g0145400 -35.51 LOC4330080 transcription factor TCP7 4330080 Os02g0635800 -35.17 LOC4339938 aspartyl protease family protein At5g10770 4339938 Os06g0118000 -35.16 LOC4347766 auxin-responsive protein SAUR36-like 4347766 Os09g0547100 -35.09 LOC4330390 ABC transporter B family member 2 4330390 Os02g0693700 -34.93 LOC4326536 classical arabinogalactan protein 26 4326536 Os01g0937900 -34.72 LOC4346166 transcription factor bHLH137 4346166 Os08g0536800 -34.65 LOC4347302 protein MIZU-KUSSEI 1 4347302 Os09g0463600 -34.57 LOC4340000 LRR receptor-like serine/threonine-protein kinase ERL1 4340000 Os06g0130100 -34.42 LOC4338923 transcription repressor OFP13 4338923 Os05g0441400 -34.35 LOC4331117 protein ECERIFERUM 1 4331117 Os02g0814200 -34.34 LOC4334856 GDSL esterase/lipase At1g20120 4334856 Os03g0859100 -34.34 LOC4327015 uncharacterized LOC4327015 4327015 Os01g0753800 -34.27 LOC4350464 neurofilament medium polypeptide 4350464 Os11g0458100 -34.24 LOC107277763 EPIDERMAL PATTERNING FACTOR-like protein 8 107277763 Os01g0824500 -34.19 LOC9269854 transcription factor IBH1-like 1 9269854 Os02g0791300 -34.05 LOC4347776 probable flavin-containing monooxygenase 1 4347776 Os09g0548700 -34.04 LOC4325406 aspartyl protease AED3 4325406 Os01g0954900 -33.77 LOC4342336 EPIDERMAL PATTERNING FACTOR-like protein 2 4342336 Os07g0132300 -33.76 LOC107277078 transcription factor bHLH57 107277078 Os03g0122100 -33.74 LOC4346256 auxin-responsive protein SAUR36-like 4346256 Os08g0550700 -33.74 LOC4350609 transcription factor ICE1 4350609 Os11g0523700 -33.58 LOC4348826 GDSL esterase/lipase At5g33370 4348826 Os10g0463200 -33.50 LOC4337187 36.4 kDa proline-rich protein 4337187 Os04g0644400 -33.50 LOC4349785 stress-response A/B barrel domain-containing protein At5g22580 4349785 Os11g0150400 -33.39 LOC112937868 uncharacterized LOC112937868 112937868 -33.36 LOC4335759 cytochrome P450 77A4 4335759 Os04g0407900 -33.27 LOC9266196 classical arabinogalactan protein 9 9266196 Os04g0545250 -33.21 LOC4324732 DNA-directed RNA polymerase II subunit RPB1 4324732 Os01g0726700 -33.05 LOC4336401 protein G1-like4 4336401 OSNPB_040516200 -32.99 LOC4330905 LRR receptor-like serine/threonine-protein kinase ERECTA 4330905 OSNPB_020777400 -32.96 LOC4330725 transcription factor ILI5 4330725 OSNPB_020747900 -32.95 LOC4345440 BURP domain-containing protein 12-like 4345440 OSNPB_080380100 -32.93 LOC9271858 fasciclin-like arabinogalactan protein 13 9271858 Os02g0308800 -32.92 LOC9266065 serine carboxypeptidase-like 45 9266065 Os11g0522900 -32.79 LOC4347773 chitin elicitor-binding protein-like 4347773 Os09g0548200 -32.77 LOC4338974 rop guanine nucleotide exchange factor 7 4338974 Os05g0454200 -32.76 LOC4335653 protein SHOOT GRAVITROPISM 5 4335653 Os04g0386300 -32.73	Lower 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC4333719 phosphomethylpyrimidine synthase, chloroplastic 4333719 Os03g0679700 -25.38 LOC4332065 pentatricopeptide repeat-containing protein At5g64320, mitochondrial 4332065 Os03g0216300 -22.80 LOC4348619 flowering locus K homology domain 4348619 Os10g0414700 -21.58 LOC4329094 zinc finger MYM-type protein 1 4329094 Os02g0301400 -21.16 LOC107276012 G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 107276012 Os04g0420033 -21.04 LOC4352254 putative pumilio homolog 7, chloroplastic 4352254 Os12g0493900 -20.88 LOC4343987 cysteine-rich receptor-like protein kinase 6 4343987 Os07g0628900 -20.72 LOC9272109 ATP-dependent DNA helicase DDX11 9272109 Os05g0219800 -20.70 LOC4339144 probable NOT transcription complex subunit VIP2 4339144 Os05g0486300 -20.65 LOC4339672 pentatricopeptide repeat-containing protein At5g39680 4339672 Os05g0572900 -20.41 LOC4348019 putative FBD-associated F-box protein At1g78730 4348019 Os10g0126600 -20.37 LOC4333720 tankyrase-1 4333720 Os03g0679800 -20.32 LOC4328200 metal transporter NRAT1-like 4328200 OSNPB_020131800 -20.31 LOC107279644 uncharacterized LOC107279644 107279644 -20.23 LOC9269734 lysine-specific demethylase JMJ30 9269734 Os08g0508500 -20.03 LOC4341523 putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial 4341523 -19.70 LOC4339741 zinc finger BED domain-containing protein RICESLEEPER 3-like 4339741 OSNPB_050583200 -19.61 LOC4327893 uncharacterized LOC4327893 4327893 Os01g0776500 -19.52 LOC4345655 pentatricopeptide repeat-containing protein At3g47530 4345655 Os08g0434000 -19.49 LOC9266900 ribonuclease H2 subunit B 9266900 Os04g0476400 -19.27 LOC9266199 uncharacterized LOC9266199 9266199 -19.24 LOC4351881 mediator of RNA polymerase II transcription subunit 15a 4351881 Os12g0245000 -19.22 LOC4349873 uncharacterized LOC4349873 4349873 Os11g0167300 -19.18 LOC4344057 probable protein arginine N-methyltransferase 3 4344057 OSNPB_070640000 -19.15 LOC4328182 protein LOW PSII ACCUMULATION 3, chloroplastic 4328182 Os02g0129300 -19.12 LOC4351578 uncharacterized LOC4351578 4351578 Os12g0162900 -19.11 LOC4341709 probable histidine kinase 1 4341709 OSNPB_060654300 -19.08 LOC4329581 protein ILITYHIA 4329581 Os02g0538400 -19.00 LOC9268191 uncharacterized LOC9268191 9268191 -18.98 LOC4346006 putative pentatricopeptide repeat-containing protein At3g05240 4346006 Os08g0511000 -18.93 LOC4348020 MEIOTIC F-BOX protein MOF-like 4348020 Os10g0126700 -18.93 LOC4352075 uncharacterized LOC4352075 4352075 Os12g0417000 -18.91 LOC4331539 uncharacterized LOC4331539 4331539 Os03g0135800 -18.74 LOC4327672 uncharacterized LOC4327672 4327672 Os01g0706100 -18.62 LOC107276304 uncharacterized LOC107276304 107276304 Os09g0547900 -18.51 LOC107280151 uncharacterized LOC107280151 107280151 -18.49 LOC4348246 uncharacterized LOC4348246 4348246 Os10g0195100 -18.31 LOC9270376 probable non-inhibitory serpin-Z9 9270376 OSNPB_110222200 -18.30 LOC112939726 uncharacterized LOC112939726 112939726 -18.26 LOC4325785 pentatricopeptide repeat-containing protein At4g01990, mitochondrial 4325785 Os01g0301700 -18.22 LOC4351390 non-structural maintenance of chromosomes element 1 homolog 4351390 Os12g0127100 -18.15 LOC9270198 putative pentatricopeptide repeat-containing protein At3g15200 9270198 Os01g0151900 -18.12 LOC9267774 uncharacterized LOC9267774 9267774 -18.07 LOC107280248 cell surface glycoprotein 1-like 107280248 -17.99 LOC4326909 pentatricopeptide repeat-containing protein At1g80270, mitochondrial 4326909 Os01g0280400 -17.99 LOC4329995 polyribonucleotide nucleotidyltransferase 2, mitochondrial-like 4329995 OSNPB_020617700 -17.98 LOC4338146 uncharacterized LOC4338146 4338146 -17.93 LOC4342430 uncharacterized LOC4342430 4342430 Os07g0155200 -17.92 LOC107278480 uncharacterized LOC107278480 107278480 -17.88 LOC4350096 calmodulin-interacting protein 111 4350096 Os11g0220400 -17.87 LOC4332935 H/ACA ribonucleoprotein complex subunit 4 4332935 Os03g0370500 -17.84 LOC4332049 mitochondrial substrate carrier family protein E 4332049 Os03g0213800 -17.72 LOC9272531 pentatricopeptide repeat-containing protein At2g35030, mitochondrial 9272531 Os11g0433101 -17.64 LOC4331982 uncharacterized LOC4331982 4331982 Os03g0203100 -17.62 LOC9271701 pentatricopeptide repeat-containing protein At3g58590 9271701 Os01g0754700 -17.59 LOC107278543 pentatricopeptide repeat-containing protein At1g11290, chloroplastic 107278543 Os07g0203900 -17.56 LOC4326122 uncharacterized LOC4326122 4326122 Os01g0113000 -17.52 LOC9266411 uncharacterized LOC9266411 9266411 -17.49 LOC4344519 exosome complex component RRP41-like 4344519 Os08g0116800 -17.47 LOC9268866 uncharacterized LOC9268866 9268866 Os04g0479700 -17.47 LOC9267654 uncharacterized LOC9267654 9267654 -17.41 LOC4341926 pentatricopeptide repeat-containing protein At5g44230 4341926 Os06g0694300 -17.34 LOC107277071 F-box/kelch-repeat protein SKIP20 107277071 Os02g0563000 -17.33 LOC107277890 pentatricopeptide repeat-containing protein At5g04780, mitochondrial 107277890 Os12g0157066 -17.29 LOC4339872 uncharacterized LOC4339872 4339872 -17.27 LOC4329167 pentatricopeptide repeat-containing protein At1g09900 4329167 Os02g0321000 -17.24 LOC9267325 uncharacterized LOC9267325 9267325 -17.24 LOC4335539 uncharacterized LOC4335539 4335539 Os04g0347900 -17.21 LOC4351313 pentatricopeptide repeat-containing protein At4g18840 4351313 Os12g0114400 -17.17 LOC4345071 aspartate carbamoyltransferase, chloroplastic-like 4345071 OSNPB_080248800 -17.14 LOC4338325 proline-, glutamic acid- and leucine-rich protein 1 4338325 Os05g0295900 -17.12 LOC9269963 F-box/LRR-repeat protein At3g58930 9269963 Os11g0209502 -17.05 LOC4348460 uncharacterized LOC4348460 4348460 Os10g0366400 -17.04 LOC4337949 nitrate regulatory gene2 protein 4337949 Os05g0172300 -17.03 LOC4341324 putative pentatricopeptide repeat-containing protein At2g02150 4341324 Os06g0565000 -17.03 LOC9272514 solanesyl-diphosphate synthase 1, mitochondrial-like 9272514 Os08g0193100 -16.97 LOC4351042 uncharacterized LOC4351042 4351042 -16.96 LOC4337601 pentatricopeptide repeat-containing protein At2g35030, mitochondrial 4337601 Os05g0112900 -16.92 LOC4343986 cysteine-rich receptor-like protein kinase 6 4343986 Os07g0628700 -16.92 LOC107277812 uncharacterized LOC107277812 107277812 Os12g0211200 -16.87 LOC4344477 protein Rf1, mitochondrial 4344477 Os08g0110200 -16.87 LOC4336229 pentatricopeptide repeat-containing protein At1g06710, mitochondrial 4336229 Os04g0488500 -16.86 LOC107280764 G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 107280764 -16.84 LOC4327587 60S ribosomal protein L30 4327587 Os01g0812800 -16.78 LOC9267371 uncharacterized LOC9267371 9267371 -16.75 LOC4340275 uncharacterized LOC4340275 4340275 Os06g0173000 -16.74 LOC4337950 F-box protein At5g07610 4337950 Os05g0172500 -16.72 LOC4332742 ribosome biogenesis protein bms1 4332742 Os03g0333100 -16.70 LOC107281148 uncharacterized LOC107281148 107281148 -16.69 LOC4348935 uncharacterized LOC4348935 4348935 Os10g0484400 -16.68 LOC107278384 pentatricopeptide repeat-containing protein At4g02750 107278384 Os04g0432800 -16.65 LOC9267684 F-box protein At3g59000 9267684 Os08g0197400 -16.63 LOC4349672 non-structural maintenance of chromosomes element 1 homolog 4349672 Os11g0130300 -16.63 LOC4343985 origin of replication complex subunit 6 4343985 Os07g0628600 -16.62 LOC9270156 uncharacterized LOC9270156 9270156 -16.62 LOC4335172 F-box/LRR-repeat protein At3g26922 4335172 Os04g0208500 -16.61 LOC4352674 kinesin-like protein KIN-12F 4352674 OSNPB_120590500 -16.52 LOC4331367 uncharacterized LOC4331367 4331367 Os03g0111800 -16.51 LOC4343805 pentatricopeptide repeat-containing protein At4g21705, mitochondrial 4343805 Os07g0598500 -16.51 LOC4334546 probable DNA gyrase subunit A, chloroplastic/mitochondrial 4334546 OSNPB_030812000 -16.50	Lower 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC4337890 probable GTP diphosphokinase CRSH2, chloroplastic 4337890 OSNPB_050161500 -36.28 LOC4342551 low molecular mass early light-inducible protein HV60, chloroplastic 4342551 Os07g0178700 -35.88 LOC4342552 low molecular mass early light-inducible protein HV60, chloroplastic 4342552 Os07g0178800 -35.84 LOC4338107 bidirectional sugar transporter SWEET3a 4338107 OSNPB_050214300 -35.25 LOC4347994 acetylserotonin O-methyltransferase 2-like 4347994 -34.95 LOC4334321 protein app1 4334321 Os03g0782200 -34.85 LOC4340559 amino acid transporter AVT1I 4340559 Os06g0228500 -34.65 LOC107277927 fatty acid desaturase 4, chloroplastic 107277927 Os08g0187900 -34.43 LOC4337967 UDP-glycosyltransferase 73E1 4337967 Os05g0177500 -33.72 LOC107277478 probable high-affinity nitrate transporter 2.4 107277478 OSNPB_010547600 -33.24 LOC4344635 beta-sesquiphellandrene synthase 4344635 Os08g0139700 -33.01 LOC9270697 WAT1-related protein At4g30420 9270697 Os09g0426500 -31.72 LOC4332309 chemocyanin 4332309 Os03g0259100 -31.57 LOC4332137 uncharacterized protein At1g01500 4332137 Os03g0228200 -30.77 LOC4340788 UDP-glucose:2-hydroxyflavanone C-glucosyltransferase 4340788 Os06g0289900 -30.62 LOC4324648 bidirectional sugar transporter SWEET3b 4324648 OSNPB_010220700 -30.30 LOC4332831 alpha-humulene synthase 4332831 Os03g0348200 -30.20 LOC4352848 actin-depolymerizing factor 11-like 4352848 OSNPB_120628100 -30.15 LOC107278220 B-box zinc finger protein 32 107278220 Os06g0661200 -29.99 LOC4330867 nitrate reductase [NAD(P)H] 4330867 Os02g0770800 -29.61 LOC4332283 tyrosine-specific transport protein 4332283 Os03g0254200 -29.56 LOC4336383 actin-related protein 2/3 complex subunit 2B 4336383 Os04g0512300 -29.47 LOC9271101 7-deoxyloganetic acid glucosyltransferase 9271101 Os07g0489200 -29.27 LOC4343015 malonyl-CoA:anthocyanidin 5-O-glucoside-6''-O-malonyltransferase 4343015 Os07g0414000 -29.22 LOC4333363 ent-isokaurene C2/C3-hydroxylase-like 4333363 Os03g0593600 -29.03 LOC4342721 seed allergenic protein RAG2-like 4342721 Os07g0213800 -29.00 LOC4326757 high molecular mass early light-inducible protein HV58, chloroplastic 4326757 Os01g0246400 -28.96 LOC4328679 UDP-glycosyltransferase 73E1 4328679 Os02g0206700 -28.78 LOC4351818 2-alkenal reductase (NADP(+)-dependent) 4351818 Os12g0226900 -28.66 LOC4343510 beta-amylase 4343510 Os07g0543100 -28.20 LOC4342458 3-oxo-5-alpha-steroid 4-dehydrogenase 2 4342458 Os07g0162100 -28.15 LOC4348095 cytochrome P450 76C2 4348095 Os10g0144700 -27.86 LOC107281072 uncharacterized LOC107281072 107281072 -27.68 LOC4330933 18.6 kDa class III heat shock protein-like 4330933 OSNPB_020782500 -27.61 LOC4339731 uncharacterized LOC4339731 4339731 Os05g0582000 -27.36 LOC4332782 peroxidase 70 4332782 Os03g0339300 -27.35 LOC4334753 probable thiol methyltransferase 2 4334753 Os03g0843800 -27.19 LOC4343010 granule-bound starch synthase 1b, chloroplastic/amyloplastic 4343010 Os07g0412100 -27.17 LOC4343427 WAT1-related protein At5g64700 4343427 Os07g0525100 -27.09 LOC4345418 dirigent protein 21 4345418 Os08g0375400 -26.97 LOC4346594 premnaspirodiene oxygenase 4346594 Os09g0275400 -26.60 LOC4326745 S-type anion channel SLAH3 4326745 Os01g0226600 -26.59 LOC4338287 polygalacturonase At1g48100 4338287 Os05g0279900 -26.46 LOC4325178 probable indole-3-pyruvate monooxygenase YUCCA10 4325178 Os01g0274100 -26.33 LOC112938187 uncharacterized LOC112938187 112938187 -26.28 LOC4329005 probable inactive nicotinamidase At3g16190 4329005 Os02g0276200 -26.05 LOC107279948 WD repeat-containing protein RUP2 107279948 -25.99 LOC4336835 S-norcoclaurine synthase 4336835 Os04g0593400 -25.92 LOC4326727 uncharacterized LOC4326727 4326727 -25.87 LOC107281665 uncharacterized LOC107281665 107281665 -25.83 LOC4335574 quinone-oxidoreductase QR1, chloroplastic 4335574 Os04g0359200 -25.74 LOC4352324 heptahelical transmembrane protein 4 4352324 Os12g0511200 -25.72 LOC4329464 bidirectional sugar transporter SWEET15-like 4329464 OSNPB_020513100 -25.61 LOC4347287 tuliposide A-converting enzyme b1, amyloplastic 4347287 Os09g0460700 -25.60 LOC4350443 uncharacterized LOC4350443 4350443 Os11g0449600 -25.41 LOC4333691 transcription factor NAI1 4333691 Os03g0671800 -25.39 LOC4336065 lysine histidine transporter-like 6 4336065 Os04g0462400 -25.38 LOC4324704 inorganic pyrophosphatase 1 4324704 Os01g0720400 -25.37 LOC4344783 anthocyanin 5-aromatic acyltransferase 4344783 Os08g0174300 -25.23 LOC4343014 protein CDI 4343014 Os07g0413800 -25.15 LOC4330124 remorin 4330124 Os02g0642200 -25.01 LOC4336603 cyclin-P2-1-like 4336603 OSNPB_040552300 -24.92 LOC9266155 5-pentadecatrienyl resorcinol O-methyltransferase 9266155 Os07g0463600 -24.86 LOC4342381 uncharacterized oxidoreductase At1g06690, chloroplastic 4342381 Os07g0142900 -24.84 LOC4349203 probable glutathione S-transferase GSTU6 4349203 Os10g0530500 -24.75 LOC4341276 uncharacterized LOC4341276 4341276 Os06g0554200 -24.64 LOC4336431 gibberellin 2-beta-dioxygenase 6-like 4336431 Os04g0522500 -24.61 LOC4336794 uncharacterized LOC4336794 4336794 Os04g0585900 -24.58 LOC4341625 premnaspirodiene oxygenase 4341625 -24.56 LOC4330953 pathogenesis-related protein PRB1-3 4330953 Os02g0786900 -24.52 LOC112938978 uncharacterized LOC112938978 112938978 -24.48 LOC4323880 crocetin glucosyltransferase, chloroplastic 4323880 Os01g0179600 -24.41 LOC4347993 acetylserotonin O-methyltransferase 3-like 4347993 OSNPB_100118000 -24.39 LOC4348111 protein NRT1/ PTR FAMILY 5.10 4348111 Os10g0148400 -24.36 LOC4326659 cytochrome P450 72A13 4326659 Os01g0627800 -24.28 LOC4326579 scopoletin glucosyltransferase 4326579 Os01g0638600 -24.22 LOC4335470 7-deoxyloganetin glucosyltransferase 4335470 Os04g0319700 -24.16 LOC4333585 flavonoid 3'-monooxygenase 4333585 Os03g0650200 -24.11 LOC4323895 ABC transporter B family member 4 4323895 Os01g0695700 -24.01 LOC4336438 UDP-glycosyltransferase 73C6-like 4336438 -23.99 LOC4327573 uncharacterized LOC4327573 4327573 Os01g0823600 -23.98 LOC9270552 indole-3-glycerol phosphate lyase, chloroplastic 9270552 Os03g0797300 -23.94 LOC9272344 3-ketoacyl-CoA synthase 6 9272344 -23.94 LOC4348690 probable cinnamyl alcohol dehydrogenase 3 4348690 OSNPB_100430200 -23.92 LOC4326740 late embryogenesis abundant protein Lea14-A 4326740 Os01g0225600 -23.89 LOC4351087 uncharacterized LOC4351087 4351087 Os11g0670900 -23.81 LOC4328603 lipoxygenase 2.3, chloroplastic 4328603 Os02g0194700 -23.79 LOC9269038 fasciclin-like arabinogalactan protein 7 9269038 Os09g0482780 -23.73 LOC4337045 uncharacterized LOC4337045 4337045 Os04g0623200 -23.71 LOC4347288 probable carboxylesterase 12 4347288 -23.71 LOC4345521 UDP-glycosyltransferase 85A2 4345521 Os08g0404000 -23.70 LOC9271682 uncharacterized LOC9271682 9271682 -23.67 LOC4338399 receptor-like protein kinase FERONIA 4338399 Os05g0317900 -23.61 LOC4339227 scopoletin glucosyltransferase 4339227 Os05g0500000 -23.51 LOC9267700 uncharacterized LOC9267700 9267700 Os01g0623900 -23.38 LOC4329764 7-deoxyloganetin glucosyltransferase 4329764 -23.35 LOC4338119 BURP domain-containing protein 2-like 4338119 OSNPB_050217800 -23.29 LOC4326177 carotenoid cleavage dioxygenase 8 homolog B, chloroplastic 4326177 OSNPB_010746400 -23.28 LOC4346534 uncharacterized LOC4346534 4346534 Os09g0256700 -23.27 LOC4346551 cinnamoyl-CoA reductase 1-like 4346551 Os09g0262000 -23.13	Lower 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC4333949 hapless 2 4333949 Os03g0723400 -39.35 LOC4350454 water stress-inducible protein Rab21-like 4350454 OSNPB_110454300 -36.35 LOC4350448 water stress-inducible protein Rab21-like 4350448 Os11g0451700 -35.85 LEA19 late embryogenesis abundant protein 19-like 4339480 OSNPB_050542500 -35.84 LOC4329464 bidirectional sugar transporter SWEET15-like 4329464 OSNPB_020513100 -35.65 LOC4342424 9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic-like 4342424 -34.78 LOC4339065 UPF0098 protein CPn_0877/CP_0992/CPj0877/CpB0906 4339065 Os05g0468800 -33.90 LOC4338925 transcription factor DIVARICATA 4338925 Os05g0442400 -33.79 LOC4334592 zinc finger protein ZAT12 4334592 Os03g0820300 -33.58 LOC4326391 transcription factor PCL1-like 4326391 OSNPB_010971800 -33.12 LOC4330829 ethylene-responsive transcription factor ERF109 4330829 Os02g0764700 -33.00 LOC4339974 dehydration-responsive element-binding protein 1C 4339974 OSNPB_060127100 -32.72 LOC4324254 late embryogenesis abundant protein 14-like 4324254 Os01g0705200 -32.63 LOC4348531 protein TIFY 11e-like 4348531 OSNPB_100391400 -32.30 LOC4337388 chaperone protein dnaJ C76, chloroplastic 4337388 Os04g0675400 -32.26 LOC4336376 peroxygenase-like 4336376 OSNPB_040511200 -32.12 LOC4334593 zinc finger protein ZAT12 4334593 Os03g0820400 -31.89 LOC4330641 uncharacterized LOC4330641 4330641 Os02g0733900 -31.62 LOC4345815 ethylene-responsive transcription factor ERF109 4345815 Os08g0474000 -31.38 LOC4328393 uncharacterized LOC4328393 4328393 Os02g0162600 -31.03 LOC4345414 putative serine/threonine-protein kinase-like protein CCR3 4345414 Os08g0374701 -30.92 LOC4349792 cytochrome P450 94C1 4349792 Os11g0151400 -30.69 LOC4349881 ethylene-responsive transcription factor ERF110 4349881 Os11g0168500 -30.06 LOC107277999 uncharacterized LOC107277999 107277999 Os03g0334300 -30.05 LOC4330867 nitrate reductase [NAD(P)H] 4330867 Os02g0770800 -29.98 LOC4331751 late embryogenesis abundant protein, group 3 4331751 Os03g0168100 -29.71 LOC4351911 laccase-25-like 4351911 Os12g0257600 -29.70 LOC4324218 dnaJ homolog subfamily B member 7 4324218 Os01g0606900 -29.32 LOC4334379 probable carboxylesterase 15 4334379 Os03g0790500 -29.24 LOC4350453 dehydrin Rab16B-like 4350453 OSNPB_110454200 -29.19 LOC4332374 probable protein phosphatase 2C 30 4332374 OSNPB_030268600 -29.16 LOC4331833 protein TIFY 11c-like 4331833 OSNPB_030180900 -29.15 LOC4324158 heat stress transcription factor C-1b-like 4324158 OSNPB_010733200 -29.14 LOC4339670 ethylene-responsive transcription factor ERF061 4339670 Os05g0572000 -29.09 LOC9271220 uncharacterized LOC9271220 9271220 -28.94 LOC4341858 early nodulin-like protein 1 4341858 Os06g0681200 -28.92 LOC4351528 uncharacterized LOC4351528 4351528 Os12g0153200 -28.57 LOC107279922 uncharacterized LOC107279922 107279922 -28.52 LOC112936899 uncharacterized LOC112936899 112936899 Os11g0181200 -28.29 LOC4331855 uncharacterized LOC4331855 4331855 Os03g0184100 -28.09 LOC9271885 uncharacterized LOC9271885 9271885 Os09g0482800 -27.94 LOC4351514 cytochrome P450 94C1 4351514 Os12g0150200 -27.87 LOC4345562 uncharacterized LOC4345562 4345562 Os08g0412800 -27.63 LOC4327401 probable 2-oxoglutarate-dependent dioxygenase At5g05600 4327401 Os01g0832600 -27.62 LOC4338097 obtusifoliol 14-alpha demethylase 4338097 Os05g0211100 -27.48 LOC9268106 EID1-like F-box protein 3 9268106 Os05g0494600 -27.46 LOC4325395 abscisic stress-ripening protein 3 4325395 Os01g0959100 -27.17 LOC4346786 uncharacterized LOC4346786 4346786 Os09g0341801 -27.03 LOC4333923 cortical cell-delineating protein 4333923 Os03g0718800 -26.83 LOC9269465 transcription factor BHLH148-like 9269465 Os01g0773800 -26.72 LOC9271382 uncharacterized PE-PGRS family protein PE_PGRS54 9271382 Os03g0296200 -26.25 LOC4334119 universal stress protein A-like protein 4334119 Os03g0750000 -26.23 LOC112936094 12-oxophytodienoate reductase 1 112936094 -26.20 LOC4331832 protein TIFY 11a-like 4331832 OSNPB_030180800 -26.19 LOC4343597 F-box protein At4g05010 4343597 Os07g0561300 -26.13 LOC4338635 Membrane protein PM19L 4338635 OSNPB_050381400 -26.10 LOC9268195 late histone H2B.L4 9268195 Os09g0570850 -26.07 LOC4325693 probable calcium-binding protein CML16 4325693 OSNPB_010135700 -25.94 LOC4348520 uncharacterized LOC4348520 4348520 Os10g0389500 -25.91 LOC4348501 uncharacterized LOC4348501 4348501 -25.82 LOC4324068 protein synthesis inhibitor I 4324068 Os01g0160800 -25.72 LOC4324175 uncharacterized LOC4324175 4324175 Os01g0654400 -25.68 LOC9267334 uncharacterized LOC9267334 9267334 Os10g0542700 -25.67 LOC4345515 uncharacterized LOC4345515 4345515 Os08g0402500 -25.66 LOC4324574 probable glutathione S-transferase GSTU6 4324574 Os01g0558100 -25.63 LOC4327287 ethylene-responsive transcription factor ERF071 4327287 Os01g0313300 -25.48 LOC4337636 uncharacterized LOC4337636 4337636 Os05g0119100 -25.41 LOC4343616 internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial 4343616 Os07g0564500 -25.30 LOC9272186 abscisic stress-ripening protein 2 9272186 Os01g0959200 -25.17 LOC4348533 protein TIFY 11d-like 4348533 OSNPB_100392400 -25.01 LOC4346868 AP2-associated protein kinase 1 4346868 Os09g0364400 -24.76 LOC4347618 dehydration-responsive element-binding protein 1B-like 4347618 OSNPB_090522000 -24.73 LOC4350452 dehydrin Rab16C-like 4350452 OSNPB_110454000 -24.73 LOC4342626 AAA-ATPase At3g28580 4342626 Os07g0192000 -24.72 LOC9269734 lysine-specific demethylase JMJ30 9269734 Os08g0508500 -24.64 LOC9270349 ethylene-responsive transcription factor ERF027 9270349 Os02g0676800 -24.58 LOC107277071 F-box/kelch-repeat protein SKIP20 107277071 Os02g0563000 -24.54 LOC4339887 late embryogenesis abundant protein 6 4339887 Os06g0110200 -24.51 LOC4346877 probable glutathione S-transferase GSTU1 4346877 Os09g0367700 -24.48 LOC4339527 non-specific lipid-transfer protein 2 4339527 Os05g0550600 -24.47 LOC4334182 isoflavone 2'-hydroxylase 4334182 Os03g0760000 -24.44 LOC4336875 ubiquinol oxidase 1b, mitochondrial-like 4336875 Os04g0600300 -24.43 LOC107276750 E3 ubiquitin-protein ligase EL5 107276750 Os02g0561000 -24.42 LOC4335417 transcription factor bHLH35 4335417 Os04g0301500 -24.38 LOC4346931 uncharacterized LOC4346931 4346931 Os09g0380600 -24.34 LOC107276748 E3 ubiquitin-protein ligase EL5 107276748 Os02g0561400 -24.29 LOC4341273 heat stress transcription factor C-2b-like 4341273 OSNPB_060553100 -24.26 LOC4323914 protein DOG1-like 4 4323914 Os01g0306400 -24.26 LOC4339736 serine carboxypeptidase-like 50 4339736 Os05g0582500 -24.16 LOC4325912 uncharacterized LOC4325912 4325912 Os01g0644200 -23.99 LOC107276751 E3 ubiquitin-protein ligase EL5 107276751 Os02g0560200 -23.95 LOC4348639 calcium-transporting ATPase 7, plasma membrane-type-like 4348639 OSNPB_100418100 -23.82 LOC4325434 uncharacterized LOC4325434 4325434 Os01g0386500 -23.81 LOC107279554 uncharacterized LOC107279554 107279554 -23.65 LOC4331521 uncharacterized LOC4331521 4331521 Os03g0133100 -23.64 LOC107276747 E3 ubiquitin-protein ligase EL5 107276747 Os02g0560600 -23.58 LOC4340994 xylanase inhibitor protein 1 4340994 Os06g0356800 -23.42 LOC4345700 glycine-rich cell wall structural protein 4345700 Os08g0442900 -23.42 LOC4329685 E3 ubiquitin-protein ligase EL5 4329685 Os02g0559800 -23.30 LOC4339388 UDP-glycosyltransferase 13 4339388 Os05g0527000 -23.30	Lower 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC4325791 calvin cycle protein CP12-1, chloroplastic 4325791 Os01g0303000 -36.77 LOC4343443 thiamine thiazole synthase 2, chloroplastic 4343443 Os07g0529600 -35.38 LOC4346803 chlorophyll a-b binding protein 1, chloroplastic-like 4346803 OSNPB_090346500 -33.67 LOC4346629 ethylene-responsive transcription factor 1-like 4346629 Os09g0287000 -33.45 LOC4352254 putative pumilio homolog 7, chloroplastic 4352254 Os12g0493900 -33.02 LOC4349671 uncharacterized LOC4349671 4349671 Os11g0130200 -31.46 LOC107278415 uncharacterized LOC107278415 107278415 Os12g0126900 -30.94 LOC107278263 uncharacterized LOC107278263 107278263 Os02g0674233 -30.79 LOC4324599 chlorophyll a-b binding protein 2, chloroplastic-like 4324599 OSNPB_010600900 -30.37 LOC4340892 chlorophyll a-b binding protein 1B-21, chloroplastic 4340892 Os06g0320500 -30.17 LOC4329743 sugar transport protein MST1-like 4329743 Os02g0574100 -29.38 LOC4333359 chlorophyll a-b binding protein, chloroplastic-like 4333359 OSNPB_030592500 -29.12 LOC4343987 cysteine-rich receptor-like protein kinase 6 4343987 Os07g0628900 -28.77 LOC4345663 chlorophyll a-b binding protein P4, chloroplastic 4345663 Os08g0435900 -28.53 LOC107275279 probable E3 ubiquitin-protein ligase ATL45 107275279 Os06g0534900 -27.84 LOC4325228 protein DMP10 4325228 Os01g0389700 -27.34 LOC4328677 UDP-glycosyltransferase 73C3 4328677 Os02g0206100 -27.26 LOC4345611 chaperonin-like RBCX protein 1, chloroplastic 4345611 Os08g0425200 -27.08 LOC4341032 chaperone protein dnaJ C76, chloroplastic 4341032 Os06g0474800 -26.95 LOC9268627 carboxymethylenebutenolidase homolog 9268627 Os05g0429500 -26.78 LOC4330451 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like 4330451 Os02g0704000 -26.62 LOC4330883 uncharacterized LOC4330883 4330883 Os02g0773500 -25.61 LOC4325823 amino-acid permease BAT1 homolog 4325823 Os01g0945300 -25.15 LOC4329742 sugar transport protein MST1-like 4329742 Os02g0574000 -25.13 LOC4343583 chlorophyll a-b binding protein CP29.1, chloroplastic 4343583 Os07g0558400 -24.80 LOC4337388 chaperone protein dnaJ C76, chloroplastic 4337388 Os04g0675400 -24.77 LOC4341038 phosphomannomutase/phosphoglucomutase 4341038 Os06g0476300 -24.61 LOC107277071 F-box/kelch-repeat protein SKIP20 107277071 Os02g0563000 -24.60 LOC4326442 light-regulated protein, chloroplastic-like 4326442 OSNPB_010102900 -24.35 LOC4347661 cytochrome P450 71A1 4347661 Os09g0530300 -23.89 LOC107279016 U-box domain-containing protein 21-like 107279016 -23.79 LOC4343600 organic cation/carnitine transporter 2 4343600 Os07g0561800 -23.70 LOC4349950 receptor-interacting serine/threonine-protein kinase 4 4349950 Os11g0182500 -23.65 LOC4328623 chlorophyll a-b binding protein 8, chloroplastic 4328623 Os02g0197600 -23.55 LOC9272302 uncharacterized LOC9272302 9272302 -23.47 LOC4343604 chlorophyll a-b binding protein of LHCII type III, chloroplastic 4343604 Os07g0562700 -23.42 LOC4329011 ent-cassadiene hydroxylase-like 4329011 Os02g0278400 -22.88 LOC4343219 thioredoxin-like protein CDSP32, chloroplastic 4343219 OSNPB_070476900 -22.86 LOC4343709 photosystem I chlorophyll a/b-binding protein 2, chloroplastic 4343709 Os07g0577600 -22.72 LOC4326623 hydroquinone glucosyltransferase 4326623 -22.61 LOC9266204 nuclear transcription factor Y subunit C-2-like 9266204 OSNPB_030251350 -22.48 LOC4327073 B-box zinc finger protein 22 4327073 Os01g0202500 -22.45 LOC4324947 uncharacterized LOC4324947 4324947 Os01g0872100 -22.44 LOC4328440 pentatricopeptide repeat-containing protein At2g35130 4328440 Os02g0170000 -22.43 LOC4333095 uncharacterized LOC4333095 4333095 Os03g0411300 -22.39 LOC4339270 photosystem II reaction center W protein, chloroplastic-like 4339270 Os05g0508900 -22.19 LOC4327177 uncharacterized LOC4327177 4327177 Os01g0660900 -22.15 LOC4335211 Werner Syndrome-like exonuclease 4335211 Os04g0225100 -22.11 LOC4346237 cytochrome P450 76M5-like 4346237 Os08g0547900 -22.11 LOC4325270 uncharacterized LOC4325270 4325270 Os01g0678100 -22.02 LOC4335579 putative ripening-related protein 1 4335579 OSNPB_040364800 -21.94 LOC4324218 dnaJ homolog subfamily B member 7 4324218 Os01g0606900 -21.93 LOC112939851 uncharacterized LOC112939851 112939851 -21.82 LOC4346989 probable cinnamyl alcohol dehydrogenase 8B 4346989 OSNPB_090400000 -21.78 LOC4346671 UPF0481 protein At3g47200 4346671 Os09g0305300 -21.61 LOC4349004 protochlorophyllide reductase B, chloroplastic-like 4349004 OSNPB_100496900 -21.59 LOC107278261 E3 ubiquitin-protein ligase EL5-like 107278261 Os02g0249200 -21.55 LOC4330101 putative serine/threonine-protein kinase 4330101 Os02g0639100 -21.51 LOC4340874 uncharacterized LOC4340874 4340874 Os06g0316000 -21.29 LOC4347421 uncharacterized LOC4347421 4347421 Os09g0485800 -21.28 LOC4346628 ethylene-responsive transcription factor 1-like 4346628 Os09g0286600 -21.25 LOC4345848 flavanone 3-dioxygenase 2-like 4345848 Os08g0480200 -21.05 LOC4333720 tankyrase-1 4333720 Os03g0679800 -21.02 LOC4335799 photosystem I subunit O 4335799 Os04g0414700 -20.69 LOC4352085 photosystem I reaction center subunit XI, chloroplastic 4352085 Os12g0420400 -20.65 LOC4344496 peroxidase 47 4344496 Os08g0113000 -20.61 LOC4338881 protein NRT1/ PTR FAMILY 5.10 4338881 Os05g0432001 -20.58 LOC4348334 nodulin-related protein 1 4348334 Os10g0330000 -20.58 LOC4347650 cytochrome P450 78A9 4347650 Os09g0528700 -20.49 LOC4327616 RING-H2 finger protein ATL74 4327616 Os01g0822800 -20.47 LOC4333320 GDSL esterase/lipase At5g55050 4333320 Os03g0580200 -20.36 LOC4347729 probable aquaporin PIP2-7 4347729 OSNPB_090541000 -20.29 LOC4343997 E3 ubiquitin-protein ligase SIRP1-like 4343997 Os07g0631200 -20.29 LOC4341254 berberine bridge enzyme-like 13 4341254 Os06g0548200 -20.19 LOC4346326 photosystem I reaction center subunit II, chloroplastic 4346326 Os08g0560900 -20.15 LOC4330886 thioredoxin-like 3-1, chloroplastic 4330886 OSNPB_020774100 -20.09 LOC4343986 cysteine-rich receptor-like protein kinase 6 4343986 Os07g0628700 -19.85 LOC4327307 1-aminocyclopropane-1-carboxylate synthase 7 4327307 Os01g0192900 -19.85 LOC4339138 transmembrane protein 56-B 4339138 Os05g0485300 -19.83 LOC9269515 probable cinnamyl alcohol dehydrogenase 8C 9269515 OSNPB_090400300 -19.80 LOC4328296 protein CHLOROPLAST IMPORT APPARATUS 2 4328296 Os02g0148000 -19.66 LOC4327369 uncharacterized LOC4327369 4327369 Os01g0837600 -19.65 LOC4328073 catalase isozyme A-like 4328073 OSNPB_020115700 -19.58 LOC4337768 uncharacterized LOC4337768 4337768 Os05g0142200 -19.44 LOC4328678 UDP-glycosyltransferase 73C3 4328678 Os02g0206400 -19.41 LOC4332353 uncharacterized LOC4332353 4332353 Os03g0265900 -19.35 LOC4329766 photosynthetic NDH subunit of lumenal location 2, chloroplastic 4329766 Os02g0578400 -19.31 LOC4343070 photosystem I reaction center subunit IV, chloroplastic 4343070 Os07g0435300 -19.27 LOC4338845 cytochrome P450 71A1 4338845 Os05g0424300 -19.00 LOC4334300 photosystem I reaction center subunit III, chloroplastic 4334300 Os03g0778100 -18.98 LOC4348591 uncharacterized endoplasmic reticulum membrane protein C16E8.02 4348591 Os10g0407200 -18.85 LOC4346604 rhodanese-like domain-containing protein 9, chloroplastic 4346604 Os09g0279400 -18.80 LOC4336028 chlorophyll a-b binding protein CP24, chloroplastic 4336028 Os04g0457000 -18.77 LOC4344784 nuclear transcription factor Y subunit B-11-like 4344784 Os08g0174500 -18.77 LOC4352572 osmotin-like protein 4352572 Os12g0569500 -18.56 LOC4325919 molybdate transporter 2 4325919 Os01g0645900 -18.53 LOC4340729 RING-H2 finger protein ATL52 4340729 Os06g0271600 -18.52 LOC4334106 protein NDH-DEPENDENT CYCLIC ELECTRON FLOW 5 4334106 Os03g0748300 -18.49 LOC4350176 chlorophyll a-b binding protein CP26, chloroplastic 4350176 Os11g0242800 -18.49 LOC4335030 uncharacterized LOC4335030 4335030 Os04g0154800 -18.42	Lower 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC4333359 chlorophyll a-b binding protein, chloroplastic-like 4333359 OSNPB_030592500 -35.76 LOC4346803 chlorophyll a-b binding protein 1, chloroplastic-like 4346803 OSNPB_090346500 -35.08 LOC4324059 protein DELAY OF GERMINATION 1 4324059 Os01g0159000 -34.14 LOC4324599 chlorophyll a-b binding protein 2, chloroplastic-like 4324599 OSNPB_010600900 -31.62 LOC4326913 uncharacterized LOC4326913 4326913 Os01g0281100 -31.02 LOC4345663 chlorophyll a-b binding protein P4, chloroplastic 4345663 Os08g0435900 -29.65 LOC4328623 chlorophyll a-b binding protein 8, chloroplastic 4328623 Os02g0197600 -29.62 LOC4343604 chlorophyll a-b binding protein of LHCII type III, chloroplastic 4343604 Os07g0562700 -29.21 LOC4344266 ethylene-responsive transcription factor RAP2-3 4344266 Os07g0674800 -29.10 LOC4347169 uncharacterized LOC4347169 4347169 Os09g0439800 -28.04 LOC4340018 granule-bound starch synthase 1, chloroplastic/amyloplastic-like 4340018 OSNPB_060133000 -27.33 LOC4340892 chlorophyll a-b binding protein 1B-21, chloroplastic 4340892 Os06g0320500 -26.88 LOC4342395 photosystem II 10 kDa polypeptide, chloroplastic 4342395 Os07g0147500 -26.47 LOC4346628 ethylene-responsive transcription factor 1-like 4346628 Os09g0286600 -26.46 LOC4333004 protein LNK1 4333004 Os03g0387900 -26.45 LOC107275818 boron transporter 4 107275818 Os01g0175700 -26.09 LOC4335799 photosystem I subunit O 4335799 Os04g0414700 -25.75 LOC4327287 ethylene-responsive transcription factor ERF071 4327287 Os01g0313300 -25.50 LOC4337130 uncharacterized LOC4337130 4337130 Os04g0635100 -25.39 LOC4329943 uncharacterized LOC4329943 4329943 Os02g0609200 -25.14 LOC9266398 uncharacterized LOC9266398 9266398 -25.06 LOC4325406 aspartyl protease AED3 4325406 Os01g0954900 -25.03 LOC4343600 organic cation/carnitine transporter 2 4343600 Os07g0561800 -24.42 LOC4339025 uncharacterized LOC4339025 4339025 Os05g0462000 -24.30 LOC4349671 uncharacterized LOC4349671 4349671 Os11g0130200 -24.23 LOC4327469 ultraviolet-B receptor UVR8 4327469 Os01g0846800 -24.01 LOC4327369 uncharacterized LOC4327369 4327369 Os01g0837600 -23.60 LOC4340334 NADPH-dependent aldehyde reductase-like protein, chloroplastic 4340334 Os06g0185100 -23.52 LOC4350176 chlorophyll a-b binding protein CP26, chloroplastic 4350176 Os11g0242800 -23.28 LOC4347266 ethylene-responsive transcription factor ERF109 4347266 Os09g0457900 -23.10 LOC4343997 E3 ubiquitin-protein ligase SIRP1-like 4343997 Os07g0631200 -22.99 LOC4330974 cytochrome c oxidase subunit 6b-2 4330974 Os02g0791400 -22.92 LOC4343709 photosystem I chlorophyll a/b-binding protein 2, chloroplastic 4343709 Os07g0577600 -22.91 LOC9266595 uncharacterized LOC9266595 9266595 -22.85 LOC4347619 dehydration-responsive element-binding protein 1H 4347619 OSNPB_090522100 -22.82 LOC4334054 uncharacterized LOC4334054 4334054 Os03g0739700 -22.55 LOC4341933 peroxidase 16 4341933 Os06g0695300 -22.47 LOC4330408 pentatricopeptide repeat-containing protein At1g31920 4330408 Os02g0697500 -22.45 LOC4343583 chlorophyll a-b binding protein CP29.1, chloroplastic 4343583 Os07g0558400 -22.45 LOC4331102 cinnamoyl-CoA reductase 1-like 4331102 Os02g0811800 -22.45 LOC4343441 isocitrate lyase-like 4343441 OSNPB_070529000 -22.42 KIN7J kinesin-like protein KIN-7J 4347645 Os09g0528000 -22.31 LOC107276775 light-inducible protein CPRF2 107276775 Os12g0601800 -22.17 LOC9266373 plant cysteine oxidase 2 9266373 Os03g0655100 -22.01 LOC4333826 pre-mRNA-splicing factor 18 4333826 Os03g0701100 -21.88 LOC107275700 ultraviolet-B receptor UVR8 107275700 Os05g0456925 -21.77 LOC4336028 chlorophyll a-b binding protein CP24, chloroplastic 4336028 Os04g0457000 -21.74 LOC4346066 uncharacterized LOC4346066 4346066 Os08g0520600 -21.58 LOC4324705 chlorophyll a-b binding protein of LHCII type 1 4324705 Os01g0720500 -21.40 LOC4341426 F-box/kelch-repeat protein At1g80440 4341426 Os06g0594400 -21.32 LOC4327121 uncharacterized LOC4327121 4327121 Os01g0173600 -21.29 LOC4337045 uncharacterized LOC4337045 4337045 Os04g0623200 -21.18 LOC4347776 probable flavin-containing monooxygenase 1 4347776 Os09g0548700 -21.15 LOC4347674 two-component response regulator-like PRR95 4347674 OSNPB_090532400 -21.04 LOC9269221 uncharacterized LOC9269221 9269221 Os06g0133200 -20.92 LOC4337415 protochlorophyllide reductase A, chloroplastic-like 4337415 OSNPB_040678700 -20.88 LOC4338958 uncharacterized LOC4338958 4338958 Os05g0450300 -20.82 LOC4332584 uncharacterized LOC4332584 4332584 Os03g0302800 -20.81 LOC4349224 beta-carotene hydroxylase 2, chloroplastic 4349224 Os10g0533500 -20.64 LOC4341247 peroxidase P7 4341247 Os06g0546500 -20.63 LOC4330051 defensin-like protein CAL1 4330051 Os02g0629800 -20.53 LOC9270424 uncharacterized LOC9270424 9270424 -20.53 LOC4340661 16.0 kDa heat shock protein, peroxisomal-like 4340661 OSNPB_060253100 -20.42 LOC4340333 putrescine hydroxycinnamoyltransferase 1-like 4340333 Os06g0184900 -20.40 LOC4342135 protein REVEILLE 1 4342135 Os06g0728700 -20.36 LOC4328702 ABC transporter A family member 8 4328702 Os02g0211000 -20.35 LOC4332464 two-component response regulator-like PRR73 4332464 OSNPB_030284100 -20.34 LOC4343010 granule-bound starch synthase 1b, chloroplastic/amyloplastic 4343010 Os07g0412100 -20.20 LOC4329992 GDSL esterase/lipase At5g33370 4329992 Os02g0617400 -20.20 LOC4343432 bisdemethoxycurcumin synthase-like 4343432 Os07g0526400 -20.17 LOC4324539 protein LNK2 4324539 Os01g0498200 -20.14 LOC4341688 chaperone protein dnaJ 8, chloroplastic 4341688 Os06g0650900 -20.12 LOC4326862 uncharacterized LOC4326862 4326862 Os01g0666600 -20.05 LOC4325972 LOB domain-containing protein 40 4325972 Os01g0129600 -19.97 LOC4346579 glutamic acid-rich protein 4346579 Os09g0271100 -19.85 LOC4336348 GDSL esterase/lipase LTL1 4336348 Os04g0507700 -19.83 LOC9266822 uncharacterized LOC9266822 9266822 Os03g0648800 -19.74 LOC4331994 probable N-acetyltransferase HLS1 4331994 Os03g0205800 -19.70 LOC4345968 tonoplast dicarboxylate transporter 4345968 Os08g0503700 -19.65 LOC107275797 putative xyloglucan glycosyltransferase 10 107275797 OSNPB_070124750 -19.65 LOC4327270 sarcoplasmic reticulum histidine-rich calcium-binding protein 4327270 Os01g0318400 -19.61 LOC4330608 calcium sensing receptor, chloroplastic 4330608 Os02g0729400 -19.61 LOC4347620 dehydration-responsive element-binding protein 1A-like 4347620 OSNPB_090522200 -19.57 LOC4347644 B-box zinc finger protein 18 4347644 Os09g0527900 -19.47 LOC4336193 BTB/POZ and TAZ domain-containing protein 1 4336193 Os04g0482300 -19.44 LOC4330288 aluminum-activated malate transporter 10 4330288 Os02g0673100 -19.42 LOC4328240 uncharacterized LOC4328240 4328240 Os02g0137700 -19.37 LOC4337946 uncharacterized LOC4337946 4337946 Os05g0171900 -19.35 LOC4324028 LOB domain-containing protein 40 4324028 Os01g0511000 -19.35 LOC4334497 protochlorophyllide-dependent translocon component 52, chloroplastic 4334497 Os03g0805600 -19.30 LOC4327387 osmotin-like protein 4327387 Os01g0839900 -19.24 LOC107280670 ABC transporter G family member 5-like 107280670 -19.13 LOC4325140 uncharacterized LOC4325140 4325140 Os01g0756300 -19.08 LOC4344326 cyclic dof factor 2 4344326 Os07g0685000 -19.05 LOC4324844 stearoyl-[acyl-carrier-protein] 9-desaturase 1, chloroplastic-like 4324844 OSNPB_010880800 -19.04 LOC4329552 uncharacterized LOC4329552 4329552 Os02g0532800 -19.04 LOC4334055 uncharacterized LOC4334055 4334055 Os03g0740200 -19.02 LOC107278415 uncharacterized LOC107278415 107278415 Os12g0126900 -19.01 LOC4335579 putative ripening-related protein 1 4335579 OSNPB_040364800 -19.00 LOC4325696 16.9 kDa class I heat shock protein 3-like 4325696 OSNPB_010136000 -18.92	Lower 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC4347315 zinc-finger homeodomain protein 1-like 4347315 OSNPB_090466400 -28.52 LOC4327307 1-aminocyclopropane-1-carboxylate synthase 7 4327307 Os01g0192900 -27.42 LOC4324276 probable aquaporin TIP4-3 4324276 OSNPB_010232000 -25.46 LOC4327980 GDSL esterase/lipase EXL3 4327980 Os02g0101400 -25.29 LOC4334529 adenylate isopentenyltransferase 5, chloroplastic 4334529 Os03g0810100 -24.98 LOC4347757 auxin-responsive protein SAUR36-like 4347757 -22.85 LOC4324954 glutathione S-transferase T3 4324954 Os01g0873000 -22.63 LOC107276774 wall-associated receptor kinase 5 107276774 Os04g0310400 -22.57 LOC4347764 auxin-responsive protein SAUR36-like 4347764 Os09g0546900 -22.57 LOC4330349 protein REVEILLE 1 4330349 Os02g0685200 -21.96 LOC4348336 UPF0301 protein TC_0483 4348336 Os10g0330400 -21.90 LOC4330207 probable aquaporin TIP2-1 4330207 OSNPB_020658100 -21.78 LOC4345350 uncharacterized LOC4345350 4345350 Os08g0351200 -20.97 LOC4349331 cortical cell-delineating protein 4349331 Os10g0552800 -20.22 LOC107278496 uncharacterized LOC107278496 107278496 -19.90 LOC107277509 uncharacterized LOC107277509 107277509 Os05g0586050 -19.88 LOC4325915 uncharacterized LOC4325915 4325915 Os01g0644900 -19.78 LOC4324764 amidophosphoribosyltransferase, chloroplastic 4324764 Os01g0873100 -19.78 LOC4327085 uncharacterized LOC4327085 4327085 Os01g0205300 -19.67 LOC4343171 acetylserotonin O-methyltransferase 3-like 4343171 Os07g0464200 -19.39 LOC9272068 4-coumarate--CoA ligase-like 2 9272068 Os10g0578950 -19.17 LOC107278441 uncharacterized LOC107278441 107278441 Os01g0912800 -19.13 LOC112939877 uncharacterized LOC112939877 112939877 -19.00 LOC4327292 protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial 4327292 Os01g0314800 -18.94 LOC4328899 uncharacterized LOC4328899 4328899 Os02g0251900 -18.89 LOC4327344 uncharacterized LOC4327344 4327344 Os01g0199700 -18.81 LOC4331223 uncharacterized LOC4331223 4331223 Os02g0827400 -18.75 LOC4344389 omega-3 fatty acid desaturase, chloroplastic 4344389 Os07g0693800 -18.71 LOC107276110 casparian strip membrane protein 2 107276110 OSNPB_080101900 -18.57 LOC9269676 nuclear envelope-associated protein 2 9269676 Os01g0292700 -18.43 LOC4352132 chloride channel protein CLC-a 4352132 Os12g0438600 -18.37 LOC4325734 glutaredoxin-C1-like 4325734 OSNPB_010368900 -18.18 LOC4352083 chloroplast stem-loop binding protein of 41 kDa b, chloroplastic 4352083 Os12g0420200 -18.15 LOC4330704 photosynthetic NDH subunit of subcomplex B 4, chloroplastic 4330704 Os02g0744000 -18.15 LOC4327183 cytochrome P450 71A1 4327183 Os01g0227700 -18.13 LOC4336044 glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 4336044 Os04g0459500 -18.11 LOC4337707 UPF0481 protein At3g47200 4337707 Os05g0130400 -18.11 LOC4334163 UDP-glycosyltransferase 83A1 4334163 Os03g0757200 -17.83 LOC4349330 cortical cell-delineating protein 4349330 Os10g0552700 -17.81 LOC4335780 glucan endo-1,3-beta-glucosidase 14 4335780 Os04g0412300 -17.72 LOC9266978 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic 9266978 Os05g0105800 -17.66 LOC9272566 cyclic dof factor 2 9272566 Os01g0264000 -17.49 LOC4351966 ribulose bisphosphate carboxylase small chain, chloroplastic-like 4351966 OSNPB_120274700 -17.40 LOC9266916 wall-associated receptor kinase 2 9266916 Os02g0807800 -17.40 LOC4345604 alpha carbonic anhydrase 7 4345604 Os08g0423500 -17.35 LOC4349329 14 kDa proline-rich protein DC2.15-like 4349329 -17.26 LOC112935981 germin-like protein 8-10 112935981 -17.24 LOC9269176 carboxyl-terminal-processing peptidase 2, chloroplastic 9269176 Os02g0815700 -17.22 LOC4347805 protein PLASTID MOVEMENT IMPAIRED 1 4347805 Os09g0553900 -17.17 LOC4347102 gamma-glutamyl peptidase 3 4347102 Os09g0424200 -17.13 LOC4351224 ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like 4351224 OSNPB_110707000 -17.05 LOC4330113 (+)-neomenthol dehydrogenase 4330113 Os02g0640800 -17.03 LOC4336904 xyloglucan endotransglucosylase/hydrolase protein 24 4336904 Os04g0604300 -16.98 LOC4344439 ferredoxin-1, chloroplastic-like 4344439 OSNPB_080104600 -16.90 LOC107279862 uncharacterized LOC107279862 107279862 -16.89 LOC4349417 beta-amylase 3, chloroplastic 4349417 Os10g0565200 -16.86 LOC4334965 uncharacterized LOC4334965 4334965 Os04g0119000 -16.77 LOC4332479 probable RNA-binding protein ARP1 4332479 Os03g0286500 -16.73 LOC4333420 metal transporter Nramp6-like 4333420 Os03g0607400 -16.73 LOC4346849 hypersensitive-induced response protein-like protein 2 4346849 Os09g0361200 -16.70 LOC4332081 uncharacterized LOC4332081 4332081 Os03g0219100 -16.50 LOC107278978 uncharacterized LOC107278978 107278978 -16.44 LOC9270429 cinnamoyl-CoA reductase 1-like 9270429 -16.39 LOC4351046 glutaredoxin-C10-like 4351046 OSNPB_110655900 -16.37 LOC107277927 fatty acid desaturase 4, chloroplastic 107277927 Os08g0187900 -16.34 LOC4340843 peroxidase 1-like 4340843 Os06g0306300 -16.33 LOC4351818 2-alkenal reductase (NADP(+)-dependent) 4351818 Os12g0226900 -16.30 LOC4346192 peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic 4346192 Os08g0541400 -16.30 LOC107276324 uncharacterized LOC107276324 107276324 Os01g0912850 -16.27 LOC4333844 protein OPAQUE10 4333844 Os03g0703300 -16.26 LOC4327002 peroxidase 1 4327002 Os01g0326300 -16.25 LOC4334620 nucleobase-ascorbate transporter 6 4334620 Os03g0823800 -16.15 LOC4326605 protein RADIALIS-like 2 4326605 Os01g0635200 -16.14 LOC4342318 pathogenesis-related protein 1 4342318 Os07g0129300 -16.09 LOC9270927 pathogenesis-related protein 1 9270927 Os07g0125500 -16.07 LOC4327981 glycerate dehydrogenase 4327981 Os02g0101500 -16.00 LOC4329844 inorganic phosphate transporter 2-1, chloroplastic 4329844 Os02g0593500 -15.88 LOC4331883 purine permease 3 4331883 Os03g0187800 -15.81 LOC4347055 gibberellin-regulated protein 12 4347055 Os09g0414900 -15.77 LOC4330777 protein EXORDIUM 4330777 Os02g0756200 -15.75 LOC4326796 probable leucine-rich repeat receptor-like protein kinase At5g49770 4326796 Os01g0935800 -15.72 LOC107281990 CASP-like protein 4A1 107281990 -15.71 LOC4349951 ankyrin-1 4349951 Os11g0182900 -15.64 LOC4336475 uncharacterized protein At4g19900 4336475 Os04g0529700 -15.63 LOC4341654 uncharacterized LOC4341654 4341654 Os06g0645600 -15.59 LOC4334753 probable thiol methyltransferase 2 4334753 Os03g0843800 -15.53 LOC4324330 glycine-rich cell wall structural protein 2-like 4324330 Os01g0916100 -15.52 rpoC2 RNA polymerase beta'' subunit 3131434 OrsajCp017 -15.48 LOC4345134 uncharacterized LOC4345134 4345134 Os08g0269700 -15.48 LOC4341998 uncharacterized LOC4341998 4341998 Os06g0704700 -15.46 trnK tRNA-Lys 3131339 OrsajCt121 -15.45 LOC4329733 probable bifunctional riboflavin biosynthesis protein RIBA 2, chloroplastic 4329733 OSNPB_020572400 -15.44 LOC4335430 probable ribose-5-phosphate isomerase 1 4335430 Os04g0306400 -15.43 LOC112937968 30S ribosomal protein S7, chloroplastic-like 112937968 -15.43 LOC4326745 S-type anion channel SLAH3 4326745 Os01g0226600 -15.34 LOC4327518 WRKY transcription factor WRKY24-like 4327518 OSNPB_010826400 -15.34 LOC4327187 pentatricopeptide repeat-containing protein At5g25630 4327187 Os01g0228400 -15.34 LOC4325071 fructose-1,6-bisphosphatase, cytosolic 4325071 OSNPB_010866400 -15.33 ndhC ndhC 3131460 OrsajCp030 -15.31 LOC4351696 uncharacterized LOC4351696 4351696 Os12g0189700 -15.29	Lower 100 Genes Symbol Function* Entrez Gene ID* Other ID PC LOC4325959 amino acid transporter AVT1I 4325959 Os01g0597600 -29.52 LOC4335417 transcription factor bHLH35 4335417 Os04g0301500 -28.87 LOC4352198 AAA-ATPase At3g28580 4352198 Os12g0471100 -25.26 LOC4324789 uncharacterized LOC4324789 4324789 Os01g0864200 -23.25 LOC4345351 uncharacterized LOC4345351 4345351 -22.97 LOC4325228 protein DMP10 4325228 Os01g0389700 -22.70 LOC4331082 wall-associated receptor kinase 2 4331082 Os02g0807900 -22.57 LOC4323896 ABC transporter B family member 11 4323896 Os01g0695800 -22.56 LOC4339502 wiskott-Aldrich syndrome protein homolog 4339502 Os05g0546400 -22.48 LOC9268836 probable WRKY transcription factor 4 9268836 Os01g0821300 -22.41 LOC4345993 lipoxygenase 7, chloroplastic-like 4345993 OSNPB_080508800 -22.21 LOC4345003 exocyst complex component EXO70E2 4345003 Os08g0232700 -22.05 LOC4330027 transcription factor MYB30-like 4330027 Os02g0624300 -21.86 LOC107276749 E3 ubiquitin-protein ligase EL5 107276749 Os02g0561800 -21.61 LOC107276748 E3 ubiquitin-protein ligase EL5 107276748 Os02g0561400 -21.02 LOC4329585 E3 ubiquitin-protein ligase PUB23 4329585 Os02g0539200 -21.02 LOC4327497 elicitor-responsive protein 1-like 4327497 OSNPB_010841700 -20.88 LOC4333197 zinc finger protein 36-like 4333197 Os03g0437200 -20.66 LOC4349232 uncharacterized LOC4349232 4349232 Os10g0534700 -20.48 LOC107276751 E3 ubiquitin-protein ligase EL5 107276751 Os02g0560200 -20.45 LOC4348531 protein TIFY 11e-like 4348531 OSNPB_100391400 -20.26 LOC9268164 putative E3 ubiquitin-protein ligase LIN-2 9268164 Os04g0584500 -20.16 LOC4325945 WRKY transcription factor WRKY24 4325945 Os01g0714800 -20.15 LOC107276750 E3 ubiquitin-protein ligase EL5 107276750 Os02g0561000 -19.97 LOC107278106 wall-associated receptor kinase 3 107278106 Os04g0367000 -19.85 LOC4345815 ethylene-responsive transcription factor ERF109 4345815 Os08g0474000 -19.63 LOC107276747 E3 ubiquitin-protein ligase EL5 107276747 Os02g0560600 -19.49 LOC4334017 uncharacterized LOC4334017 4334017 Os03g0734500 -19.48 LOC4341202 VQ motif-containing protein 10 4341202 Os06g0530600 -19.40 LOC4351960 disease resistance protein Pik-2-like 4351960 -19.37 LOC4351514 cytochrome P450 94C1 4351514 Os12g0150200 -19.27 LOC4347618 dehydration-responsive element-binding protein 1B-like 4347618 OSNPB_090522000 -19.24 LOC9272536 auxin-responsive protein SAUR71 9272536 Os01g0768333 -19.00 LOC4347619 dehydration-responsive element-binding protein 1H 4347619 OSNPB_090522100 -18.99 LOC4329685 E3 ubiquitin-protein ligase EL5 4329685 Os02g0559800 -18.97 LOC4343432 bisdemethoxycurcumin synthase-like 4343432 Os07g0526400 -18.84 LOC4331833 protein TIFY 11c-like 4331833 OSNPB_030180900 -18.81 LOC4335698 protein TIFY 9-like 4335698 OSNPB_040395800 -18.58 LOC4331849 uncharacterized LOC4331849 4331849 Os03g0183500 -18.57 LOC4331832 protein TIFY 11a-like 4331832 OSNPB_030180800 -18.52 LOC4335588 putative receptor-like protein kinase At4g00960 4335588 Os04g0369066 -18.47 LOC4330306 dehydration-responsive element-binding protein 1G-like 4330306 OSNPB_020677300 -18.46 LOC4347266 ethylene-responsive transcription factor ERF109 4347266 Os09g0457900 -18.23 LOC4332121 allene oxide synthase 2-like 4332121 OSNPB_030225900 -18.22 LOC4350130 disease resistance protein RPM1 4350130 Os11g0229300 -18.18 LOC4325227 protein DMP10 4325227 Os01g0389200 -18.18 LOC4328899 uncharacterized LOC4328899 4328899 Os02g0251900 -18.17 LOC4324781 NAC domain-containing protein 90 4324781 Os01g0862800 -18.10 LOC9269465 transcription factor BHLH148-like 9269465 Os01g0773800 -18.09 LOC4343433 probable carboxylesterase 3 4343433 Os07g0526600 -17.92 LOC9267198 uncharacterized LOC9267198 9267198 Os06g0314501 -17.91 LOC4345994 probable lipoxygenase 8, chloroplastic 4345994 OSNPB_080509100 -17.89 LOC4341816 uncharacterized LOC4341816 4341816 Os06g0673800 -17.88 LOC9266916 wall-associated receptor kinase 2 9266916 Os02g0807800 -17.78 LOC4334054 uncharacterized LOC4334054 4334054 Os03g0739700 -17.78 LOC4326920 mitogen-activated protein kinase kinase kinase 17 4326920 Os01g0699600 -17.78 LOC107277690 disease resistance protein RGA2 107277690 Os01g0608400 -17.67 LOC9270091 uncharacterized LOC9270091 9270091 -17.60 LOC4349395 ethylene-responsive transcription factor 5 4349395 -17.59 LOC4351085 calmodulin-binding protein 60 B 4351085 Os11g0669100 -17.55 LOC107277838 receptor-like protein 7 107277838 Os01g0162300 -17.52 LOC4337457 probable CCR4-associated factor 1 homolog 11 4337457 Os04g0684900 -17.47 LOC4347907 U-box domain-containing protein 33 4347907 Os09g0569800 -17.44 LOC4328124 S-(+)-linalool synthase, chloroplastic-like 4328124 OSNPB_020121700 -17.41 LOC4352145 cytochrome P450 94B3 4352145 Os12g0443000 -17.25 LOC4328499 gamma-glutamyl peptidase 5 4328499 Os02g0179200 -17.21 LOC107277622 serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C 107277622 Os07g0482700 -17.13 LOC4350204 disease resistance protein RGA5-like 4350204 Os11g0249000 -17.12 LOC4336080 heavy metal-associated isoprenylated plant protein 16 4336080 Os04g0464100 -17.09 LOC9266899 mavicyanin 9266899 Os08g0137900 -17.01 LOC9270552 indole-3-glycerol phosphate lyase, chloroplastic 9270552 Os03g0797300 -16.96 LOC4346786 uncharacterized LOC4346786 4346786 Os09g0341801 -16.90 LOC112939248 protein ALP1-like 112939248 -16.89 LOC4341678 WRKY transcription factor WRKY28-like 4341678 Os06g0649000 -16.82 LOC4351076 uncharacterized LOC4351076 4351076 Os11g0665600 -16.74 LOC4345414 putative serine/threonine-protein kinase-like protein CCR3 4345414 Os08g0374701 -16.72 LOC4339092 WRKY transcription factor WRKY24 4339092 Os05g0474800 -16.72 LOC4339501 vegetative cell wall protein gp1 4339501 Os05g0546300 -16.71 LOC4352099 putative cyclin-dependent kinase F-2 4352099 OSNPB_120424700 -16.52 LOC4349148 RHOMBOID-like protein 2 4349148 Os10g0521900 -16.52 LOC4336721 dehydration-responsive element-binding protein 1E-like 4336721 OSNPB_040572400 -16.43 LOC4330001 transcription factor MYB57 4330001 Os02g0618400 -16.38 LOC4347989 purple acid phosphatase 3 4347989 Os10g0116800 -16.35 LOC4349950 receptor-interacting serine/threonine-protein kinase 4 4349950 Os11g0182500 -16.33 LOC4331574 uncharacterized LOC4331574 4331574 Os03g0140900 -16.31 LOC107280542 uncharacterized LOC107280542 107280542 -16.28 LOC4324494 putative receptor-like protein kinase At3g47110 4324494 Os01g0152000 -16.23 LOC4325662 protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1 4325662 Os01g0186900 -16.14 LOC4325537 gibberellin 2-beta-dioxygenase 3-like 4325537 Os01g0209700 -16.11 LOC4324183 probable WRKY transcription factor 53 4324183 Os01g0656400 -16.10 LOC4349792 cytochrome P450 94C1 4349792 Os11g0151400 -16.08 LOC4330063 wall-associated receptor kinase 5 4330063 Os02g0632800 -15.97 LOC4330037 phenylalanine ammonia-lyase 4330037 Os02g0626600 -15.93 LOC4348639 calcium-transporting ATPase 7, plasma membrane-type-like 4348639 OSNPB_100418100 -15.85 LOC4324923 pectin acetylesterase 5 4324923 Os01g0892500 -15.82 LOC4325944 uncharacterized LOC4325944 4325944 Os01g0714600 -15.78 LOC4333712 wiskott-Aldrich syndrome protein homolog 4333712 Os03g0676400 -15.77 LOC112938609 heavy metal-associated isoprenylated plant protein 16-like 112938609 -15.74 LOC4327611 probable WRKY transcription factor 30 4327611 Os01g0821600 -15.73 LOC9271211 uncharacterized LOC9271211 9271211 -15.70