cis; GGCCCAA

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
GGCCCAWWW UP1ATMSD [ref]

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of GGCCCAA

[Help]
GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of GGCCCAA.

[Help]
correlTFfunction ((alias))*TF family
(link to AGRIS)
0.70At1g71260expressed protein WHIRLY
0.68At4g3093050S ribosomal protein L21, mitochondrial (RPL21M) ((WRKY32)) WRKY
0.62At1g14410DNA-binding protein-related WHIRLY
0.60At3g52910expressed protein GRF
0.60At3g57150dyskerin, putative / nucleolar protein NAP57, putative ((NAP57)) NAC
0.60At5g16070chaperonin, putative TCP
-0.59At1g08320bZIP family transcription factor bZIP
-0.56At1g19310zinc finger (C3HC4-type RING finger) family protein C3H
-0.56At3g02340zinc finger (C3HC4-type RING finger) family protein C3H
-0.55At3g19580zinc finger (C2H2 type) protein 2 (AZF2) ((AZF2)) C2H2
-0.55At4g27410no apical meristem (NAM) family protein (RD26) ((RD26)) NAC
-0.54At5g04340zinc finger (C2H2 type) family protein ((C2H2)) C2H2
0.54At3g22780CXC domain protein (TSO1) ((TSO1)) CPP
0.53At2g02740transcription factor, putative WHIRLY
-0.53At3g52800zinc finger (AN1-like) family protein C2H2

link to other 304 cis elements in ATTED

similar seq.
←GGCCCAA→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; TTGGGCC
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
GGCCCAA1.000.0962
AGGCCCA0.990.1186
GCCCAAT0.980.0874
AAGGCCC0.980.0884
AATGGGC0.980.0988
GCCCAAA0.980.0778
ATGGGCC0.980.0987
GGCCCAT0.980.1183
AAGCCCA0.970.1084
ATGGGCT0.970.08100