[←][→] vvi   VIT_00028153001 Gene
functional annotation
Function   probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like  
GO BP
GO CC
GO MF
KEGG vvi03040 [list] [network] Spliceosome (166 genes)
Protein XP_002278247.1  XP_019076757.1  XP_019076758.1 
BLAST XP_002278247.1  XP_019076757.1  XP_019076758.1 
Orthologous [Ortholog page] AT2G47250 (ath)  AT3G62310 (ath)  LOC4332645 (osa)  LOC7455416 (ppo)  LOC7481418 (ppo)  LOC11407634 (mtr)  LOC11424621 (mtr)  LOC100191798 (zma)  LOC100282531 (zma)  LOC100807162 (gma)  LOC100817506 (gma)  LOC100819776 (gma)  LOC101263245 (sly)  LOC103842049 (bra)  LOC103858239 (bra) 
Subcellular
localization
wolf
cyto 4,  chlo 3,  mito 1,  nucl 1,  plas 1,  cyto_mito 1,  nucl_plas 1  (predict for XP_002278247.1)
cyto 6,  chlo 2,  mito 1  (predict for XP_019076757.1)
cyto 5,  chlo 2,  nucl 1,  mito 1  (predict for XP_019076758.1)
Subcellular
localization
TargetP
other 5  (predict for XP_002278247.1)
other 5  (predict for XP_019076757.1)
other 5  (predict for XP_019076758.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
vvi03040 Spliceosome 2
Genes directly connected with LOC100253689 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.5 LOC100249183 nipped-B-like protein [detail] 100249183
6.7 LOC100251740 WD repeat-containing protein 43 [detail] 100251740
6.1 LOC100260455 pre-mRNA-processing factor 17 [detail] 100260455
5.3 LOC100245301 protein LAZ1 [detail] 100245301
Coexpressed
gene list		 [Coexpressed gene list for LOC100253689]
Gene expression
All samples [Expression pattern for all samples]
Link to other DBs
Entrez Gene ID 100253689      
Refseq ID (protein) XP_002278247.1 
XP_019076757.1 
XP_019076758.1 


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