[←][→] ath   AT3G62310 Gene
functional annotation
Function   RNA helicase family protein  
GO BP
GO:0008380 [list] [network] RNA splicing  (272 genes)  IEA  
GO:0006397 [list] [network] mRNA processing  (376 genes)  IEA  
GO CC
GO:0005681 [list] [network] spliceosomal complex  (142 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (477 genes)  IDA  
GO:0005829 [list] [network] cytosol  (3506 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0003724 [list] [network] RNA helicase activity  (75 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1790 genes)  IBA  
GO:0005524 [list] [network] ATP binding  (2003 genes)  IEA  
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_001325529.1  NP_001325530.1  NP_191790.1 
BLAST NP_001325529.1  NP_001325530.1  NP_191790.1 
Orthologous [Ortholog page] AT2G47250 (ath)  LOC4332645 (osa)  LOC7455416 (ppo)  LOC7481418 (ppo)  LOC11407634 (mtr)  LOC11424621 (mtr)  LOC100191798 (zma)  LOC100253689 (vvi)  LOC100282531 (zma)  LOC100807162 (gma)  LOC100817506 (gma)  LOC100819776 (gma)  LOC101263245 (sly)  LOC103842049 (bra)  LOC103858239 (bra) 
Subcellular
localization
wolf
cyto 6,  chlo 1,  nucl 1,  plas 1,  vacu 1,  E.R. 1,  golg 1,  nucl_plas 1,  golg_plas 1,  E.R._vacu 1,  E.R._plas 1  (predict for NP_001325529.1)
cyto 7,  nucl 1,  chlo 1,  cysk 1,  nucl_plas 1  (predict for NP_001325530.1)
cyto 6,  nucl 2,  chlo 1,  mito 1,  chlo_mito 1  (predict for NP_191790.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001325529.1)
other 8  (predict for NP_001325530.1)
other 8  (predict for NP_191790.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03008 Ribosome biogenesis in eukaryotes 2
Genes directly connected with AT3G62310 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.6 SDN3 small RNA degrading nuclease 3 [detail] 836859
7.4 SAP130b Cleavage and polyadenylation specificity factor (CPSF) A subunit protein [detail] 824688
7.1 AT5G15270 RNA-binding KH domain-containing protein [detail] 831379
7.0 AT2G47250 RNA helicase family protein [detail] 819338
6.8 MAK10 MAK10 homologue [detail] 815566
6.6 AT4G31180 Class II aminoacyl-tRNA and biotin synthetases superfamily protein [detail] 829246
5.9 AT4G35910 Adenine nucleotide alpha hydrolases-like superfamily protein [detail] 829746
5.7 AT4G08510 mediator of RNA polymerase II transcription subunit-like protein [detail] 826410
Coexpressed
gene list		 [Coexpressed gene list for AT3G62310]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
251265_at
251265_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
251265_at
251265_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
251265_at
251265_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 825404      
Refseq ID (protein) NP_001325529.1 
NP_001325530.1 
NP_191790.1 


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