[←][→] mtr   MTR_3g005510 Gene
functional annotation
Function   regulator of nonsense transcripts UPF3  
GO BP
GO CC
GO MF
KEGG mtr03013 [list] [network] RNA transport (186 genes)
mtr03015 [list] [network] mRNA surveillance pathway (112 genes)
Protein XP_003598033.2  XP_024635574.1 
BLAST XP_003598033.2  XP_024635574.1 
Orthologous [Ortholog page] UPF3 (ath)  LOC4335928 (osa)  LOC7475778 (ppo)  LOC11430328 (mtr)  LOC100795376 (gma)  LOC100798866 (gma)  LOC100799816 (gma)  LOC100801152 (gma)  LOC100852735 (vvi)  LOC101263168 (sly)  LOC101264766 (sly)  LOC103641667 (zma)  LOC103646424 (zma)  LOC103833613 (bra)  LOC103840043 (bra)  LOC103868862 (bra) 
Subcellular
localization
wolf
nucl 4,  cyto_nucl 4,  cyto 1,  mito 1,  chlo 1,  plas 1,  cysk 1,  cyto_mito 1,  cysk_plas 1  (predict for XP_003598033.2)
nucl 4,  cyto_nucl 3,  chlo 1,  mito 1,  chlo_mito 1  (predict for XP_024635574.1)
Subcellular
localization
TargetP
other 6  (predict for XP_003598033.2)
other 6  (predict for XP_024635574.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 3
mtr04144 Endocytosis 3
mtr03013 RNA transport 2
mtr04075 Plant hormone signal transduction 2
Genes directly connected with LOC11419393 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
5.9 LOC11446367 transcription factor TGA2.2 [detail] 11446367
5.7 LOC11414692 AMSH-like ubiquitin thioesterase 3 [detail] 11414692
5.7 LOC11415137 topless-related protein 2 [detail] 11415137
5.4 LOC11416732 probable inactive tRNA-specific adenosine deaminase-like protein 3 [detail] 11416732
5.3 LOC11422260 nuclear poly(A) polymerase 1 [detail] 11422260
5.2 LOC11413607 pre-mRNA-splicing factor CWC25 homolog [detail] 11413607
5.1 LOC11438940 transcriptional adapter ADA2a [detail] 11438940
4.9 LOC25482090 F-box/FBD/LRR-repeat protein At1g13570 [detail] 25482090
4.6 LOC11436287 4'-phosphopantetheinyl transferase [detail] 11436287
Coexpressed
gene list		 [Coexpressed gene list for LOC11419393]
Gene expression
All samples [Expression pattern for all samples]
Link to other DBs
Entrez Gene ID 11419393      
Refseq ID (protein) XP_003598033.2 
XP_024635574.1 


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