[←][→] ath   AT1G33980 Gene
functional annotation
Function   Smg-4/UPF3 family protein  
GO BP
GO:0000184 [list] [network] nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  (19 genes)  IBA IMP  
GO:0048571 [list] [network] long-day photoperiodism  (19 genes)  IMP  
GO:0045727 [list] [network] positive regulation of translation  (26 genes)  IBA  
GO:0009863 [list] [network] salicylic acid mediated signaling pathway  (42 genes)  IMP  
GO:0051028 [list] [network] mRNA transport  (63 genes)  IEA  
GO:0009867 [list] [network] jasmonic acid mediated signaling pathway  (71 genes)  IMP  
GO:0009611 [list] [network] response to wounding  (212 genes)  IMP  
GO:0042742 [list] [network] defense response to bacterium  (399 genes)  IMP  
GO CC
GO:0005730 [list] [network] nucleolus  (477 genes)  IBA IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  HDA ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IBA  
GO MF
GO:0003729 [list] [network] mRNA binding  (1026 genes)  IBA IDA  
KEGG ath03013 [list] [network] RNA transport (171 genes)
ath03015 [list] [network] mRNA surveillance pathway (115 genes)
Protein NP_001117406.1  NP_174660.2 
BLAST NP_001117406.1  NP_174660.2 
Orthologous [Ortholog page] LOC4335928 (osa)  LOC7475778 (ppo)  LOC11419393 (mtr)  LOC11430328 (mtr)  LOC100795376 (gma)  LOC100798866 (gma)  LOC100799816 (gma)  LOC100801152 (gma)  LOC100852735 (vvi)  LOC101263168 (sly)  LOC101264766 (sly)  LOC103641667 (zma)  LOC103646424 (zma)  LOC103833613 (bra)  LOC103840043 (bra)  LOC103868862 (bra) 
Subcellular
localization
wolf
nucl 8,  plas 1,  golg_plas 1  (predict for NP_001117406.1)
nucl 8,  plas 1,  golg_plas 1  (predict for NP_174660.2)
Subcellular
localization
TargetP
other 6  (predict for NP_001117406.1)
other 5  (predict for NP_174660.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 RNA transport 3
ath03015 mRNA surveillance pathway 3
ath03018 RNA degradation 2
Genes directly connected with UPF3 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
6.4 AT1G15280 CASC3/Barentsz eIF4AIII binding protein [detail] 838095
6.1 SMG7 Telomerase activating protein Est1 [detail] 832060
6.0 AT3G06670 binding protein [detail] 819852
5.5 AT3G26730 RING/U-box superfamily protein [detail] 822285
Coexpressed
gene list		 [Coexpressed gene list for UPF3]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
255979_at
255979_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
255979_at
255979_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
255979_at
255979_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 840295      
Refseq ID (protein) NP_001117406.1 
NP_174660.2 


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