[←][→] ath   AT3G12990 Gene
functional annotation
Function   ribonuclease PH45A  
GO BP
GO:0034473 [list] [network] U1 snRNA 3'-end processing  (4 genes)  IBA  
GO:0034476 [list] [network] U5 snRNA 3'-end processing  (4 genes)  IBA  
GO:0071042 [list] [network] nuclear polyadenylation-dependent mRNA catabolic process  (4 genes)  IBA  
GO:0071038 [list] [network] nuclear polyadenylation-dependent tRNA catabolic process  (7 genes)  IBA  
GO:0000467 [list] [network] exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (8 genes)  IBA  
GO:0071035 [list] [network] nuclear polyadenylation-dependent rRNA catabolic process  (9 genes)  IBA  
GO:0034475 [list] [network] U4 snRNA 3'-end processing  (10 genes)  IBA  
GO:0034427 [list] [network] nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'  (12 genes)  IBA  
GO:0071028 [list] [network] nuclear mRNA surveillance  (14 genes)  IBA  
GO:0043928 [list] [network] exonucleolytic catabolism of deadenylated mRNA  (16 genes)  IBA  
GO:0016075 [list] [network] rRNA catabolic process  (17 genes)  IBA  
GO:0010025 [list] [network] wax biosynthetic process  (23 genes)  IGI  
GO CC
GO:0000177 [list] [network] cytoplasmic exosome (RNase complex)  (12 genes)  IBA  
GO:0000176 [list] [network] nuclear exosome (RNase complex)  (13 genes)  IBA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IDA ISM  
GO MF
GO:0000175 [list] [network] 3'-5'-exoribonuclease activity  (32 genes)  IGI ISS  
GO:0003723 [list] [network] RNA binding  (1790 genes)  IEA  
KEGG ath03018 [list] [network] RNA degradation (113 genes)
Protein NP_001189874.1  NP_001319535.1  NP_001327698.1  NP_566441.1 
BLAST NP_001189874.1  NP_001319535.1  NP_001327698.1  NP_566441.1 
Orthologous [Ortholog page] CER7 (ath)  LOC4329627 (osa)  LOC7467989 (ppo)  LOC11441855 (mtr)  LOC25483959 (mtr)  LOC100265860 (vvi)  LOC100384304 (zma)  LOC100780196 (gma)  LOC100802751 (gma)  LOC101263517 (sly)  LOC103830261 (bra)  LOC103841899 (bra) 
Subcellular
localization
wolf
cyto 4,  nucl 3,  chlo 2,  pero 1,  cysk_nucl 1,  nucl_plas 1  (predict for NP_001189874.1)
cyto 4,  chlo 3,  cyto_nucl 3  (predict for NP_001319535.1)
cyto 4,  nucl 3,  chlo 1,  pero 1,  cysk_nucl 1,  nucl_plas 1  (predict for NP_001327698.1)
cyto 4,  nucl 3,  chlo 2,  pero 1,  cysk_nucl 1,  nucl_plas 1  (predict for NP_566441.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001189874.1)
other 7  (predict for NP_001319535.1)
other 7  (predict for NP_001327698.1)
other 7  (predict for NP_566441.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 4
ath03008 Ribosome biogenesis in eukaryotes 2
Genes directly connected with RRP45a on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
5.7 AT2G47790 Transducin/WD40 repeat-like superfamily protein [detail] 819391
5.2 AT4G38150 Pentatricopeptide repeat (PPR) superfamily protein [detail] 829971
5.1 AT5G15550 Transducin/WD40 repeat-like superfamily protein [detail] 831408
Coexpressed
gene list		 [Coexpressed gene list for RRP45a]
Gene expression
All samples [Expression pattern for all samples]
Link to other DBs
Entrez Gene ID 820485      
Refseq ID (protein) NP_001189874.1 
NP_001319535.1 
NP_001327698.1 
NP_566441.1 


The preparation time of this page was 0.3 [sec].