[←][→] ath   AT3G56980 Gene
functional annotation
Function   basic helix-loop-helix (bHLH) DNA-binding superfamily protein  
GO BP
GO:0010106 [list] [network] cellular response to iron ion starvation  (6 genes)  IEP  
GO:0055072 [list] [network] iron ion homeostasis  (96 genes)  IGI  
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (334 genes)  IBA  
GO:0006355 [list] [network] regulation of transcription, DNA-templated  (1984 genes)  TAS  
GO CC
GO:0090575 [list] [network] RNA polymerase II transcription factor complex  (80 genes)  IBA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0000977 [list] [network] RNA polymerase II regulatory region sequence-specific DNA binding  (152 genes)  IBA  
GO:0008134 [list] [network] transcription factor binding  (173 genes)  IBA  
GO:0046983 [list] [network] protein dimerization activity  (570 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1599 genes)  IBA ISS  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_191257.1 
BLAST NP_191257.1 
Orthologous [Ortholog page] BHLH100 (ath)  bHLH38 (ath)  LOC4325750 (osa)  LOC7495693 (ppo)  LOC11433801 (mtr)  LOC25483183 (mtr)  LOC25483186 (mtr)  LOC100247143 (vvi)  LOC100252974 (vvi)  LOC100262373 (vvi)  BHLH300 (gma)  BHLH320 (gma)  LOC101257620 (sly)  LOC101258211 (sly)  BHLH322 (gma)  LOC103636279 (zma)  LOC103650720 (zma)  LOC103828716 (bra)  LOC103828717 (bra)  LOC103830080 (bra)  LOC103831386 (bra)  LOC103841601 (bra)  LOC103841602 (bra)  LOC103848954 (bra)  LOC103863069 (bra)  LOC103863074 (bra)  LOC103863075 (bra)  LOC103863077 (bra)  LOC103865869 (bra)  LOC103866544 (bra)  LOC104644426 (sly) 
Subcellular
localization
wolf
nucl 4,  cyto 2,  extr 2,  cysk_nucl 2  (predict for NP_191257.1)
Subcellular
localization
TargetP
other 9  (predict for NP_191257.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with bHLH39 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
22.1 bHLH38 basic helix-loop-helix (bHLH) DNA-binding superfamily protein [detail] 824864
17.1 BHLH101 basic helix-loop-helix (bHLH) DNA-binding superfamily protein [detail] 830293
15.3 BHLH100 basic helix-loop-helix protein 100 [detail] 818723
12.3 AT2G14247 Expressed protein [detail] 2745524
8.8 AT1G74770 zinc ion binding protein [detail] 843816
Coexpressed
gene list		 [Coexpressed gene list for bHLH39]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
251677_at
251677_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
251677_at
251677_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
251677_at
251677_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 824865      
Refseq ID (protein) NP_191257.1 


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