[←][→] ath   AT3G58560 Gene
functional annotation
Function   DNAse I-like superfamily protein  
GO BP
GO:0000289 [list] [network] nuclear-transcribed mRNA poly(A) tail shortening  (6 genes)  IBA  
GO:0005986 [list] [network] sucrose biosynthetic process  (13 genes)  IGI  
GO:0019252 [list] [network] starch biosynthetic process  (33 genes)  IGI  
GO:0006397 [list] [network] mRNA processing  (376 genes)  IGI  
GO CC
GO:0030014 [list] [network] CCR4-NOT complex  (21 genes)  IBA  
GO:0000932 [list] [network] P-body  (56 genes)  IPI  
GO:0005829 [list] [network] cytosol  (3506 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IBA  
GO MF
GO:0004535 [list] [network] poly(A)-specific ribonuclease activity  (19 genes)  IBA  
GO:0000175 [list] [network] 3'-5'-exoribonuclease activity  (32 genes)  IBA  
GO:0003723 [list] [network] RNA binding  (1790 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
KEGG ath03018 [list] [network] RNA degradation (113 genes)
Protein NP_191415.2 
BLAST NP_191415.2 
Orthologous [Ortholog page] AT3G58580 (ath)  LOC4331740 (osa)  LOC4348610 (osa)  LOC25483567 (mtr)  LOC25499554 (mtr)  LOC100265801 (vvi)  LOC100279626 (zma)  LOC100279717 (zma)  LOC100280629 (zma)  LOC100775270 (gma)  LOC100819402 (gma)  LOC101255473 (sly)  LOC101256818 (sly)  LOC103830166 (bra)  LOC103830169 (bra)  LOC103841733 (bra)  LOC103862977 (bra) 
Subcellular
localization
wolf
chlo 4,  nucl 2,  mito 1,  cyto_nucl 1,  cysk_nucl 1,  nucl_plas 1  (predict for NP_191415.2)
Subcellular
localization
TargetP
other 7  (predict for NP_191415.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 2
ath03015 mRNA surveillance pathway 2
ath03018 RNA degradation 2
Genes directly connected with AT3G58560 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.2 AT1G43690 ubiquitin interaction motif-containing protein [detail] 840956
7.0 AT3G58580 DNAse I-like superfamily protein [detail] 825027
6.9 LBA1 RNA helicase [detail] 834747
6.9 SHH2 DNA-BINDING TRANSCRIPTION FACTOR 2 [detail] 821367
6.9 GUN1 s uncoupled 1 [detail] 817698
5.8 DXPS3 1-deoxy-D-xylulose 5-phosphate synthase 3 [detail] 831009
5.8 MBR2 RING/U-box superfamily protein [detail] 829550
5.0 AT5G50340 DNA repair protein RadA-like protein [detail] 835101
Coexpressed
gene list		 [Coexpressed gene list for AT3G58560]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
251581_at
251581_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
251581_at
251581_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
251581_at
251581_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 825025      
Refseq ID (protein) NP_191415.2 


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