[←][→] ath   AT4G25540 Gene
functional annotation
Function   homolog of DNA mismatch repair protein MSH3  
GO BP
GO:0000735 [list] [network] removal of nonhomologous ends  (1 genes)  IBA  
GO:0043111 [list] [network] replication fork arrest  (1 genes)  IBA  
GO:0000710 [list] [network] meiotic mismatch repair  (3 genes)  IBA  
GO:0051096 [list] [network] positive regulation of helicase activity  (6 genes)  IBA  
GO:0043570 [list] [network] maintenance of DNA repeat elements  (7 genes)  IBA  
GO:0006312 [list] [network] mitotic recombination  (10 genes)  IBA  
GO:0006298 [list] [network] mismatch repair  (14 genes)  IBA ISS  
GO:0007131 [list] [network] reciprocal meiotic recombination  (49 genes)  IBA  
GO CC
GO:0032302 [list] [network] MutSbeta complex  (2 genes)  IBA  
GO:0032300 [list] [network] mismatch repair complex  (8 genes)  IBA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0032135 [list] [network] DNA insertion or deletion binding  (3 genes)  IBA  
GO:0030983 [list] [network] mismatched DNA binding  (9 genes)  IBA IDA  
GO:0003684 [list] [network] damaged DNA binding  (40 genes)  IDA  
GO:0008094 [list] [network] DNA-dependent ATPase activity  (82 genes)  IBA  
GO:0005524 [list] [network] ATP binding  (2003 genes)  IBA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath03430 [list] [network] Mismatch repair (39 genes)
Protein NP_194284.2 
BLAST NP_194284.2 
Orthologous [Ortholog page] LOC4337442 (osa)  LOC7474039 (ppo)  LOC25485081 (mtr)  LOC100266933 (vvi)  LOC100789883 (gma)  LOC101248748 (sly)  LOC103642206 (zma)  LOC103861568 (bra) 
Subcellular
localization
wolf
nucl 6,  chlo 2,  mito 1,  cysk 1  (predict for NP_194284.2)
Subcellular
localization
TargetP
chlo 6  (predict for NP_194284.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 3
ath03430 Mismatch repair 3
ath03440 Homologous recombination 2
ath03410 Base excision repair 2
ath03420 Nucleotide excision repair 2
Genes directly connected with MSH3 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.5 AT5G63960 DNA polymerase delta subunit 1 [detail] 836517
7.0 RAD5 DNA/RNA helicase protein [detail] 832338
6.4 MEI1 transcription coactivator [detail] 844068
6.2 AT5G07400 forkhead-associated domain-containing protein / FHA domain-containing protein [detail] 830631
Coexpressed
gene list		 [Coexpressed gene list for MSH3]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
245236_at
245236_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
245236_at
245236_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
245236_at
245236_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 828659      
Refseq ID (protein) NP_194284.2 


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