[←][→] ath   AT4G34050 Gene
functional annotation
Function   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein  
GO BP
GO:0009805 [list] [network] coumarin biosynthetic process  (6 genes)  IMP  
GO:0009809 [list] [network] lignin biosynthetic process  (47 genes)  IMP  
GO:0046686 [list] [network] response to cadmium ion  (346 genes)  IEP  
GO:0032259 [list] [network] methylation  (371 genes)  IEA  
GO CC
GO:0005829 [list] [network] cytosol  (3506 genes)  HDA TAS  
GO:0005886 [list] [network] plasma membrane  (3771 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0042409 [list] [network] caffeoyl-CoA O-methyltransferase activity  (4 genes)  IDA  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
KEGG ath00940 [list] [network] Phenylpropanoid biosynthesis (166 genes)
ath00941 [list] [network] Flavonoid biosynthesis (22 genes)
ath00945 [list] [network] Stilbenoid, diarylheptanoid and gingerol biosynthesis (7 genes)
ath00999 [list] [network] Biosynthesis of secondary metabolites - unclassified (12 genes)
Protein NP_001328048.1  NP_195131.1  NP_849491.1 
BLAST NP_001328048.1  NP_195131.1  NP_849491.1 
Orthologous [Ortholog page] LOC4340240 (osa)  LOC7457542 (ppo)  LOC7492044 (ppo)  LOC11446939 (mtr)  LOC25493461 (mtr)  LOC25493481 (mtr)  CCoAOMT (sly)  LOC100233087 (vvi)  LOC100243978 (vvi)  LOC100273683 (zma)  SOMT-9 (gma)  LOC100779260 (gma)  LOC100795858 (gma)  LOC100799303 (gma)  LOC101253032 (sly)  LOC101260278 (sly)  LOC101265187 (sly)  LOC101265690 (sly)  LOC101265977 (sly)  LOC103834443 (bra)  LOC103862317 (bra)  LOC107282093 (zma) 
Subcellular
localization
wolf
cyto 3,  mito 3,  chlo 2,  plas 1,  golg_plas 1  (predict for NP_001328048.1)
cyto 6,  nucl 1,  mito 1,  plas 1,  E.R. 1,  cysk 1,  cysk_nucl 1,  nucl_plas 1,  cysk_plas 1,  E.R._plas 1,  mito_plas 1  (predict for NP_195131.1)
cyto 6,  cysk 2,  nucl 1,  mito 1,  pero 1  (predict for NP_849491.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001328048.1)
other 8,  chlo 3  (predict for NP_195131.1)
other 8  (predict for NP_849491.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00940 Phenylpropanoid biosynthesis 13
ath01230 Biosynthesis of amino acids 6
ath00999 Biosynthesis of secondary metabolites - unclassified 5
ath00941 Flavonoid biosynthesis 4
ath00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 4
Genes directly connected with CCoAOMT1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
13.5 LysoPL2 lysophospholipase 2 [detail] 841709
13.0 4CL1 4-coumarate:CoA ligase 1 [detail] 841593
12.7 CYP98A3 cytochrome P450, family 98, subfamily A, polypeptide 3 [detail] 818686
11.3 OMT1 O-methyltransferase 1 [detail] 835504
11.0 MAT3 methionine adenosyltransferase 3 [detail] 818260
10.5 4CL2 4-coumarate:CoA ligase 2 [detail] 821678
8.7 AT1G28680 HXXXD-type acyl-transferase family protein [detail] 839768
8.3 ATCAD4 GroES-like zinc-binding alcohol dehydrogenase family protein [detail] 821479
8.1 AT5G66120 3-dehydroquinate synthase [detail] 836744
7.3 CB5-B cytochrome B5 [detail] 817832
6.1 CAD5 cinnamyl alcohol dehydrogenase 5 [detail] 829572
Coexpressed
gene list		 [Coexpressed gene list for CCoAOMT1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
253276_at
253276_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
253276_at
253276_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
253276_at
253276_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 829551      
Refseq ID (protein) NP_001328048.1 
NP_195131.1 
NP_849491.1 


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