functional annotation |
Function |
RPA70-kDa subunit B |
|
GO BP |
GO:0007004 [list] [network] telomere maintenance via telomerase
|
(11 genes)
|
IBA
|
|
GO:0006268 [list] [network] DNA unwinding involved in DNA replication
|
(18 genes)
|
IBA
|
|
GO:0000723 [list] [network] telomere maintenance
|
(36 genes)
|
IBA
|
|
GO:0006289 [list] [network] nucleotide-excision repair
|
(46 genes)
|
IBA
|
|
GO:0000724 [list] [network] double-strand break repair via homologous recombination
|
(68 genes)
|
IBA
|
|
GO:0010224 [list] [network] response to UV-B
|
(71 genes)
|
IMP
|
|
GO:0006261 [list] [network] DNA-dependent DNA replication
|
(94 genes)
|
IBA
|
|
GO:0051321 [list] [network] meiotic cell cycle
|
(166 genes)
|
IBA
|
|
GO:0006281 [list] [network] DNA repair
|
(295 genes)
|
IBA
TAS
|
|
|
GO CC |
GO:0005662 [list] [network] DNA replication factor A complex
|
(8 genes)
|
IBA
|
|
GO:0000784 [list] [network] nuclear chromosome, telomeric region
|
(23 genes)
|
IBA
|
|
GO:0005634 [list] [network] nucleus
|
(10793 genes)
|
ISM
|
|
|
GO MF |
GO:0043047 [list] [network] single-stranded telomeric DNA binding
|
(11 genes)
|
IBA
|
|
GO:0003684 [list] [network] damaged DNA binding
|
(40 genes)
|
IBA
|
|
GO:0003697 [list] [network] single-stranded DNA binding
|
(75 genes)
|
IBA
|
|
GO:0043565 [list] [network] sequence-specific DNA binding
|
(796 genes)
|
IBA
|
|
GO:0046872 [list] [network] metal ion binding
|
(3180 genes)
|
IEA
|
|
|
KEGG |
ath03030 [list] [network] DNA replication (50 genes) |
|
ath03420 [list] [network] Nucleotide excision repair (69 genes) |
|
ath03430 [list] [network] Mismatch repair (39 genes) |
|
ath03440 [list] [network] Homologous recombination (67 genes) |
|
Protein |
NP_196419.1
|
BLAST |
NP_196419.1
|
Orthologous |
[Ortholog page]
RPA70D (ath)
LOC4332052 (osa)
LOC25493890 (mtr)
LOC100255412 (vvi)
LOC100273584 (zma)
LOC100280726 (zma)
LOC100777091 (gma)
LOC100808364 (gma)
LOC101255870 (sly)
LOC103837365 (bra)
LOC103855752 (bra)
LOC103860562 (bra)
|
Subcellular localization wolf |
nucl 5,
cyto 2,
chlo 1,
golg 1,
chlo_mito 1,
cysk_plas 1
|
(predict for NP_196419.1)
|
|
Subcellular localization TargetP |
other 6
|
(predict for NP_196419.1)
|
|
Gene coexpression |
Network*for coexpressed genes |
KEGG* ID |
Title |
#genes |
Link to the KEGG* map (Multiple genes) |
ath03030 |
DNA replication |
5 |
|
ath03440 |
Homologous recombination |
4 |
|
ath03420 |
Nucleotide excision repair |
3 |
|
ath03430 |
Mismatch repair |
3 |
|
Genes directly connected with RPA70B on the network
coex z* |
Locus |
Function* |
Coexpression detail |
Entrez Gene ID* |
23.9 |
RPA70D |
Replication factor-A protein 1-like protein |
[detail] |
836221 |
18.5 |
BARD1 |
breast cancer associated RING 1 |
[detail] |
839329 |
17.4 |
POLA3 |
DNA primase POLA3 |
[detail] |
834193 |
17.3 |
AT3G14740 |
RING/FYVE/PHD zinc finger superfamily protein |
[detail] |
820702 |
16.1 |
ABAP1 |
ARMADILLO BTB protein 1 |
[detail] |
831145 |
14.8 |
CYCA3;1 |
Cyclin A3;1 |
[detail] |
834324 |
13.9 |
RPA2 |
replicon protein A2 |
[detail] |
816985 |
13.8 |
ORC2 |
origin recognition complex second largest subunit 2 |
[detail] |
818332 |
13.7 |
AT3G56870 |
hypothetical protein |
[detail] |
824854 |
13.0 |
CDT1A |
CDT1-like protein A |
[detail] |
817684 |
12.5 |
HMGB6 |
high-mobility group box 6 |
[detail] |
832408 |
11.6 |
DEL1 |
DP-E2F-like 1 |
[detail] |
823971 |
10.0 |
UBP21 |
ubiquitin-specific protease 21 |
[detail] |
834717 |
9.4 |
AT5G38690 |
Zinc-finger domain of monoamine-oxidase A repressor R1 protein |
[detail] |
833859 |
9.3 |
CDC6 |
cell division control 6 |
[detail] |
817518 |
8.1 |
MAP65-5 |
microtubule-associated protein 65-5 |
[detail] |
818454 |
6.7 |
CTF7 |
protein CTF7 |
[detail] |
829267 |
|
Coexpressed gene list |
[Coexpressed gene list for RPA70B]
|
Gene expression |
All samples |
[Expression pattern for all samples]
|
AtGenExpress* (Development) |
250560_at
X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.
|
AtGenExpress* (Stress) |
250560_at
X axis is samples (pdf file), and Y axis is log2-expression.
|
AtGenExpress* (Hormone) |
250560_at
X axis is samples (xls file), and Y axis is log-expression.
|