ATTED-II : GeneID search result

[←][→] ath AT5G20510 Gene

functional annotation

Function

alfin-like 5

GO BP

GO:0006325 [list] [network] chromatin organization	(338 genes)	IEA
GO:0009414 [list] [network] response to water deprivation	(361 genes)	IEP
GO:0009651 [list] [network] response to salt stress	(485 genes)	IEP
GO:0006355 [list] [network] regulation of transcription, DNA-templated	(1984 genes)	IEA

GO CC

GO:0005634 [list] [network] nucleus

(10793 genes)

IDA ISM

GO MF

GO:0035064 [list] [network] methylated histone binding	(14 genes)	ISS
GO:0003714 [list] [network] transcription corepressor activity	(34 genes)	IDA
GO:0042393 [list] [network] histone binding	(72 genes)	IEA
GO:0003677 [list] [network] DNA binding	(2280 genes)	IDA
GO:0046872 [list] [network] metal ion binding	(3180 genes)	IEA

KEGG

Protein

NP_001331722.1 NP_001331723.1 NP_197551.2

BLAST

NP_001331722.1 NP_001331723.1 NP_197551.2

Orthologous

[Ortholog page] AL6 (ath) AL3 (ath) AL4 (ath) AL7 (ath) LOC4324896 (osa) LOC4335954 (osa) LOC4338816 (osa) LOC4343868 (osa) LOC4350183 (osa) LOC7478178 (ppo) LOC7497594 (ppo) LOC9269003 (osa) LOC11433421 (mtr) LOC25481987 (mtr) LOC25486461 (mtr) LOC25494361 (mtr) LOC25500530 (mtr) LOC100170695 (gma) LOC100170696 (gma) PHD4 (gma) LOC100170698 (gma) PHD6 (gma) LOC100170700 (gma) LOC100192074 (zma) LOC100247536 (vvi) LOC100259036 (vvi) LOC100263503 (vvi) LOC100273857 (zma) LOC100283100 (zma) LOC100283532 (zma) LOC100283630 (zma) LOC100284916 (zma) fin1 (sly) LOC100500110 (gma) LOC100777146 (gma) LOC100794662 (gma) LOC100807826 (gma) LOC100852794 (vvi) LOC101248114 (sly) LOC101248299 (sly) LOC101250743 (sly) LOC101259267 (sly) LOC101264911 (sly) LOC103635648 (zma) LOC103827517 (bra) LOC103836071 (bra) LOC103837114 (bra) LOC103839442 (bra) LOC103842964 (bra) LOC103845671 (bra) LOC103848022 (bra) LOC103851351 (bra)

Subcellular
localization
wolf

chlo 4, mito 2, cyto 1, nucl 1, extr 1, cysk 1, cysk_nucl 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1	(predict for NP_001331722.1)
nucl 4, chlo 1, cyto 1, plas 1, extr 1, cyto_plas 1	(predict for NP_001331723.1)
chlo 3, mito 3, chlo_mito 3, cyto 1, pero 1, cyto_mito 1, cyto_pero 1	(predict for NP_197551.2)

Subcellular
localization
TargetP

other 4	(predict for NP_001331722.1)
other 8, mito 3	(predict for NP_001331723.1)
other 8, mito 3	(predict for NP_197551.2)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with AL5 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
4.6	AT2G40640	RING/U-box superfamily protein	[detail]	818659
4.6	PFC1	Ribosomal RNA adenine dimethylase family protein	[detail]	839283
4.4	AT5G03560	Tetratricopeptide repeat (TPR)-like superfamily protein	[detail]	831789

Coexpressed
gene list

[Coexpressed gene list for AL5]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

246083_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

246083_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

246083_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	832173
Refseq ID (protein)	NP_001331722.1
	NP_001331723.1
	NP_197551.2

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