ATTED-II : GeneID search result

[←][→] ath AT5G40140 Gene

functional annotation

Function

RING/U-box superfamily protein with ARM repeat domain-containing protein

GO BP

GO:0016567 [list] [network] protein ubiquitination

(624 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus	(10793 genes)	IBA
GO:0005737 [list] [network] cytoplasm	(14855 genes)	IBA ISM

GO MF

GO:0061630 [list] [network] ubiquitin protein ligase activity	(204 genes)	IDA
GO:0005515 [list] [network] protein binding	(4605 genes)	IPI

KEGG

Protein

NP_198830.1

BLAST

NP_198830.1

Orthologous

[Ortholog page] PUB39 (ath) AT5G62560 (ath) PUB38 (ath) LOC4340611 (osa) LOC4346948 (osa) LOC7453750 (ppo) LOC7458016 (ppo) LOC7495929 (ppo) LOC11434906 (mtr) LOC25489555 (mtr) LOC100244998 (vvi) LOC100255877 (vvi) LOC100281075 (zma) LOC100281122 (zma) LOC100775869 (gma) LOC100784564 (gma) LOC100798675 (gma) LOC100815075 (gma) LOC101243948 (sly) LOC101258053 (sly) LOC103637803 (zma) LOC103837417 (bra) LOC103855018 (bra) LOC103855284 (bra) LOC103863953 (bra) LOC103873200 (bra) LOC107276525 (osa)

Subcellular
localization
wolf

chlo 5, nucl 4

(predict for NP_198830.1)

Subcellular
localization
TargetP

chlo 8

(predict for NP_198830.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with AT5G40140 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
6.4	AT5G40150	Peroxidase superfamily protein	[detail]	834012
4.8	PANC	pantoate-beta-alanine ligase	[detail]	834942
4.6	AT2G26730	Leucine-rich repeat protein kinase family protein	[detail]	817214
3.6	HSL2	HAESA-like 2	[detail]	836700

Coexpressed
gene list

[Coexpressed gene list for AT5G40140]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

249391_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

249391_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

249391_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	834011
Refseq ID (protein)	NP_198830.1

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