[←][→] ath   AT5G42540 Gene
functional annotation
Function   exoribonuclease 2  
GO BP
GO:0010587 [list] [network] miRNA catabolic process  (6 genes)  IMP  
GO:0000967 [list] [network] rRNA 5'-end processing  (7 genes)  IMP  
GO:0060149 [list] [network] negative regulation of posttranscriptional gene silencing  (8 genes)  IMP  
GO:0071035 [list] [network] nuclear polyadenylation-dependent rRNA catabolic process  (9 genes)  IMP  
GO:0006397 [list] [network] mRNA processing  (376 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA IMP ISM  
GO MF
GO:0004534 [list] [network] 5'-3' exoribonuclease activity  (5 genes)  IDA IGI  
GO:0008270 [list] [network] zinc ion binding  (554 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (4187 genes)  IEA  
KEGG ath03008 [list] [network] Ribosome biogenesis in eukaryotes (98 genes)
ath03018 [list] [network] RNA degradation (113 genes)
Protein NP_001190450.1  NP_199069.1 
BLAST NP_001190450.1  NP_199069.1 
Orthologous [Ortholog page] XRN3 (ath)  LOC4324952 (osa)  LOC7493956 (ppo)  LOC11445985 (mtr)  LOC100253568 (vvi)  LOC100260845 (vvi)  LOC100501093 (zma)  LOC100783068 (gma)  LOC100785683 (gma)  LOC100817163 (gma)  LOC101248085 (sly)  LOC101258556 (sly)  LOC103649964 (zma)  LOC103654383 (zma)  LOC103828020 (bra)  LOC103832011 (bra)  LOC103852968 (bra)  LOC112416443 (mtr)  LOC112418725 (mtr)  LOC112421174 (mtr) 
Subcellular
localization
wolf
cyto 4,  nucl 3,  chlo 2,  mito 1,  cyto_mito 1  (predict for NP_001190450.1)
cyto 4,  chlo 3,  cyto_nucl 3  (predict for NP_199069.1)
Subcellular
localization
TargetP
other 5,  mito 4,  scret 3  (predict for NP_001190450.1)
other 5,  mito 4,  scret 3  (predict for NP_199069.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 4
Genes directly connected with XRN2 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.9 SDN3 small RNA degrading nuclease 3 [detail] 836859
8.7 AT1G06720 P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 837182
7.9 HOS1 ubiquitin-protein ligase [detail] 818568
5.9 AT5G42530 hypothetical protein [detail] 834260
Coexpressed
gene list		 [Coexpressed gene list for XRN2]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
249200_at
249200_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
249200_at
249200_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
249200_at
249200_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 834261      
Refseq ID (protein) NP_001190450.1 
NP_199069.1 


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