ATTED-II : GeneID search result

[←][→] ath AT5G59160 Gene

functional annotation

Function

type one serine/threonine protein phosphatase 2

GO BP

GO:0006470 [list] [network] protein dephosphorylation

(133 genes)

TAS

GO CC

GO:0000164 [list] [network] protein phosphatase type 1 complex	(6 genes)	ISS
GO:0005739 [list] [network] mitochondrion	(4405 genes)	ISM
GO:0005634 [list] [network] nucleus	(10793 genes)	IBA
GO:0005737 [list] [network] cytoplasm	(14855 genes)	IBA

GO MF

GO:0004722 [list] [network] protein serine/threonine phosphatase activity	(113 genes)	IBA IDA ISS
GO:0046872 [list] [network] metal ion binding	(3180 genes)	IEA

KEGG

ath03015 [list] [network] mRNA surveillance pathway (115 genes)

Protein

NP_001032103.1 NP_200724.1 NP_851218.1

BLAST

NP_001032103.1 NP_200724.1 NP_851218.1

Orthologous

[Ortholog page] LOC542269 (zma) TOPP1 (ath) TOPP4 (ath) TOPP9 (ath) TOPP5 (ath) TOPP7 (ath) TOPP8 (ath) TOPP6 (ath) TOPP3 (ath) LOC4326473 (osa) LOC4331166 (osa) LOC4332369 (osa) LOC4340228 (osa) LOC7458113 (ppo) LOC7478936 (ppo) LOC7479289 (ppo) LOC7487983 (ppo) LOC11406064 (mtr) LOC11413712 (mtr) LOC11419847 (mtr) LOC11424441 (mtr) LOC11425683 (mtr) LOC11431740 (mtr) LOC11432243 (mtr) LOC25502117 (mtr) LOC100191199 (zma) LOC100216757 (zma) LOC100217163 (zma) LOC100240794 (vvi) LOC100240815 (vvi) LOC100250219 (vvi) LOC100256994 (vvi) LOC100258649 (vvi) LOC100259840 (vvi) LOC100263930 (vvi) LOC100272981 (zma) LOC100282306 (zma) LOC100283013 (zma) LOC100284227 (zma) LOC100780047 (gma) LOC100783178 (gma) LOC100790490 (gma) LOC100791655 (gma) LOC100799218 (gma) LOC100804212 (gma) LOC100805030 (gma) LOC100807069 (gma) LOC100808597 (gma) LOC100811593 (gma) LOC100816262 (gma) LOC101243716 (sly) LOC101249363 (sly) LOC101249463 (sly) LOC101251329 (sly) LOC101254698 (sly) LOC101258308 (sly) LOC101260053 (sly) LOC103634267 (zma) LOC103635487 (zma) LOC103827974 (bra) LOC103833886 (bra) LOC103838234 (bra) LOC103845343 (bra) LOC103849914 (bra) LOC103851601 (bra) LOC103854676 (bra) LOC103856650 (bra) LOC103857886 (bra) LOC103858272 (bra) LOC103858598 (bra) LOC103859101 (bra) LOC103868042 (bra) LOC103870808 (bra) LOC103873291 (bra) LOC103874509 (bra)

Subcellular
localization
wolf

cyto 4, nucl 2, cysk 2, cysk_nucl 2, cyto_pero 2, cyto_E.R. 2, cyto_plas 2	(predict for NP_001032103.1)
cyto 4, nucl 2, cysk 2, cysk_nucl 2, cyto_pero 2, cyto_E.R. 2, cyto_plas 2	(predict for NP_200724.1)
cyto 4, nucl 2, cysk 2, cysk_nucl 2, cyto_pero 2, cyto_E.R. 2, cyto_plas 2	(predict for NP_851218.1)

Subcellular
localization
TargetP

other 7	(predict for NP_001032103.1)
other 7	(predict for NP_200724.1)
other 7	(predict for NP_851218.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03015	mRNA surveillance pathway	4

Genes directly connected with TOPP2 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
6.9	AT5G25510	Protein phosphatase 2A regulatory B subunit family protein	[detail]	832626
6.5	HAP13	Clathrin adaptor complexes medium subunit family protein	[detail]	842372
6.4	TOPP5	type one serine/threonine protein phosphatase 5	[detail]	823835
5.5	URH1	uridine-ribohydrolase 1	[detail]	818204
4.7	SSP5	SCP1-like small phosphatase 5	[detail]	831059
4.1	HWS	Galactose oxidase/kelch repeat superfamily protein	[detail]	825332

Coexpressed
gene list

[Coexpressed gene list for TOPP2]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

247761_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

247761_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

247761_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	836034
Refseq ID (protein)	NP_001032103.1
	NP_200724.1
	NP_851218.1

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