[←][→] ath   AT1G16610 Gene
functional annotation
Function   arginine/serine-rich 45  
GO BP
GO:0000381 [list] [network] regulation of alternative mRNA splicing, via spliceosome  (30 genes)  IBA IMP  
GO:0010182 [list] [network] sugar mediated signaling pathway  (37 genes)  IMP  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (172 genes)  IBA IPI  
GO:0008380 [list] [network] RNA splicing  (272 genes)  IBA NAS  
GO CC
GO:0061574 [list] [network] ASAP complex  (1 genes)  IBA  
GO:0016607 [list] [network] nuclear speck  (86 genes)  IDA  
GO:0005681 [list] [network] spliceosomal complex  (142 genes)  IEA  
GO:0005654 [list] [network] nucleoplasm  (444 genes)  IBA IDA  
GO:0005730 [list] [network] nucleolus  (477 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IBA  
GO MF
GO:0003723 [list] [network] RNA binding  (1790 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath03013 [list] [network] RNA transport (171 genes)
ath03015 [list] [network] mRNA surveillance pathway (115 genes)
Protein NP_001185014.1  NP_001321125.1  NP_001321126.1  NP_001321127.1  NP_001321128.1  NP_173107.1  NP_973844.1 
BLAST NP_001185014.1  NP_001321125.1  NP_001321126.1  NP_001321127.1  NP_001321128.1  NP_173107.1  NP_973844.1 
Orthologous [Ortholog page] AT1G79100 (ath)  LOC4325394 (osa)  LOC4337561 (osa)  LOC11406805 (mtr)  LOC100267894 (vvi)  LOC100783566 (gma)  LOC100804778 (gma)  LOC101257116 (sly)  LOC103636269 (zma)  LOC103650711 (zma)  LOC103835996 (bra)  LOC103842841 (bra)  LOC103872449 (bra)  LOC113000133 (gma) 
Subcellular
localization
wolf
nucl 4,  mito 4,  chlo 2,  cyto_nucl 2,  cysk_nucl 2,  nucl_plas 2  (predict for NP_001185014.1)
nucl 4,  mito 4,  chlo 2,  cyto_nucl 2,  cysk_nucl 2,  nucl_plas 2  (predict for NP_001321125.1)
nucl 4,  mito 4,  chlo 2,  cyto_nucl 2,  cysk_nucl 2,  nucl_plas 2  (predict for NP_001321126.1)
nucl 4,  mito 4,  chlo 2,  cyto_nucl 2,  cysk_nucl 2,  nucl_plas 2  (predict for NP_001321127.1)
nucl 4,  mito 4,  chlo 2,  cyto_nucl 2,  cysk_nucl 2,  nucl_plas 2  (predict for NP_001321128.1)
nucl 4,  mito 4,  chlo 2,  cyto_nucl 2,  cysk_nucl 2,  nucl_plas 2  (predict for NP_173107.1)
nucl 4,  mito 4,  chlo 2,  cyto_nucl 2,  cysk_nucl 2,  nucl_plas 2  (predict for NP_973844.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_001185014.1)
chlo 9  (predict for NP_001321125.1)
chlo 9  (predict for NP_001321126.1)
chlo 9  (predict for NP_001321127.1)
chlo 9  (predict for NP_001321128.1)
chlo 9  (predict for NP_173107.1)
chlo 9  (predict for NP_973844.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 7
ath03013 RNA transport 2
ath03015 mRNA surveillance pathway 2
Genes directly connected with SR45 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
10.0 AT2G25970 KH domain-containing protein [detail] 817137
9.2 smB small nuclear ribonucleoprotein associated protein B [detail] 827792
8.7 MAC5A CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [detail] 837248
7.6 AT4G37130 hydroxyproline-rich glycoprotein family protein [detail] 829867
7.4 AT4G28990 RNA-binding protein-like protein [detail] 829020
7.0 FY Transducin/WD40 repeat-like superfamily protein [detail] 831191
6.7 AT4G03120 C2H2 and C2HC zinc fingers superfamily protein [detail] 828071
6.6 AT1G34360 translation initiation factor 3 (IF-3) family protein [detail] 840338
Coexpressed
gene list		 [Coexpressed gene list for SR45]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
246324_at
246324_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
246324_at
246324_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
246324_at
246324_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 838230      
Refseq ID (protein) NP_001185014.1 
NP_001321125.1 
NP_001321126.1 
NP_001321127.1 
NP_001321128.1 
NP_173107.1 
NP_973844.1 


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