[←][→] ath   AT1G19120 Gene
functional annotation
Function   Small nuclear ribonucleoprotein family protein  
GO BP
GO:0000290 [list] [network] deadenylation-dependent decapping of nuclear-transcribed mRNA  (7 genes)  IBA  
GO:0042538 [list] [network] hyperosmotic salinity response  (57 genes)  IMP  
GO:0009631 [list] [network] cold acclimation  (59 genes)  IMP  
GO:0009414 [list] [network] response to water deprivation  (361 genes)  IMP  
GO:0006397 [list] [network] mRNA processing  (376 genes)  IGI  
GO:0016070 [list] [network] RNA metabolic process  (1305 genes)  IBA IGI  
GO CC
GO:1990726 [list] [network] Lsm1-7-Pat1 complex  (7 genes)  IBA  
GO:0000932 [list] [network] P-body  (56 genes)  IBA IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0000339 [list] [network] RNA cap binding  (9 genes)  IBA  
GO:0003723 [list] [network] RNA binding  (1790 genes)  IBA IDA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath03018 [list] [network] RNA degradation (113 genes)
Protein NP_564072.1 
BLAST NP_564072.1 
Orthologous [Ortholog page] LSM1B (ath)  LOC4335963 (osa)  LOC11421251 (mtr)  LOC11444969 (mtr)  LOC100249828 (vvi)  LOC100250857 (vvi)  LOC100280029 (zma)  LOC100280518 (zma)  LOC100306352 (gma)  LOC100812441 (gma)  LOC101252597 (sly)  LOC101254180 (sly)  LOC103842307 (bra)  LOC103842663 (bra)  LOC103859552 (bra)  LOC103870068 (bra) 
Subcellular
localization
wolf
cyto 5,  cyto_E.R. 3,  chlo 3,  plas 1,  cysk 1,  cysk_plas 1  (predict for NP_564072.1)
Subcellular
localization
TargetP
other 8,  scret 3  (predict for NP_564072.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with LSM1A on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
6.8 AT4G21192 Cytochrome c oxidase biogenesis protein Cmc1-like protein [detail] 5008151
6.2 AT4G35905 Trm112p-like protein [detail] 829745
6.2 AT2G23940 transmembrane protein (DUF788) [detail] 816926
5.8 TO2 thioredoxin O2 [detail] 839988
5.5 AT4G10170 SNARE-like superfamily protein [detail] 826608
4.4 IAA8 indoleacetic acid-induced protein 8 [detail] 816798
Coexpressed
gene list		 [Coexpressed gene list for LSM1A]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
259477_at
259477_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
259477_at
259477_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
259477_at
259477_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 838495      
Refseq ID (protein) NP_564072.1 


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