[←][→] ath   AT1G63780 Gene
functional annotation
Function   Ribosomal RNA processing Brix domain protein  
GO BP
GO:0006364 [list] [network] rRNA processing  (276 genes)  IBA TAS  
GO CC
GO:0034457 [list] [network] Mpp10 complex  (3 genes)  IBA  
GO:0016363 [list] [network] nuclear matrix  (9 genes)  IDA  
GO:0015030 [list] [network] Cajal body  (16 genes)  TAS  
GO:0032040 [list] [network] small-subunit processome  (41 genes)  IBA  
GO:0005732 [list] [network] small nucleolar ribonucleoprotein complex  (88 genes)  TAS  
GO:0005730 [list] [network] nucleolus  (477 genes)  IBA TAS  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0030515 [list] [network] snoRNA binding  (19 genes)  IBA  
KEGG ath03008 [list] [network] Ribosome biogenesis in eukaryotes (98 genes)
Protein NP_176564.1 
BLAST NP_176564.1 
Orthologous [Ortholog page] LOC4344688 (osa)  LOC11422276 (mtr)  LOC100216667 (zma)  LOC100248284 (vvi)  LOC100803810 (gma)  LOC100814677 (gma)  LOC101253657 (sly)  LOC101261441 (sly)  LOC103838098 (bra) 
Subcellular
localization
wolf
nucl 4,  chlo 2,  cysk_nucl 2,  cyto 1,  chlo_mito 1  (predict for NP_176564.1)
Subcellular
localization
TargetP
mito 7,  other 5  (predict for NP_176564.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 3
Genes directly connected with IMP4 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
10.9 AT3G23620 Ribosomal RNA processing Brix domain protein [detail] 821942
10.7 AT1G75670 DNA-directed RNA polymerase [detail] 843901
10.7 AT2G44860 Ribosomal protein L24e family protein [detail] 819095
10.5 AT5G15750 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein [detail] 831431
8.6 EDA35 temperature sensing protein-like protein [detail] 825894
6.7 MFDX2 MITOCHONDRIAL FERREDOXIN 2 [detail] 827856
Coexpressed
gene list		 [Coexpressed gene list for IMP4]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
260323_at
260323_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
260323_at
260323_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
260323_at
260323_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 842682      
Refseq ID (protein) NP_176564.1 


The preparation time of this page was 0.2 [sec].