ATTED-II : GeneID search result

[←][→] ath AT1G09530 Gene

functional annotation

Function

phytochrome interacting factor 3

GO BP

GO:0031539 [list] [network] positive regulation of anthocyanin metabolic process	(6 genes)	IMP
GO:0009704 [list] [network] de-etiolation	(12 genes)	IMP
GO:0009585 [list] [network] red, far-red light phototransduction	(54 genes)	IEA
GO:0009740 [list] [network] gibberellic acid mediated signaling pathway	(71 genes)	IMP
GO:0010017 [list] [network] red or far-red light signaling pathway	(76 genes)	IMP
GO:0009639 [list] [network] response to red or far red light	(215 genes)	IMP
GO:0007165 [list] [network] signal transduction	(1575 genes)	TAS
GO:0006355 [list] [network] regulation of transcription, DNA-templated	(1984 genes)	TAS

GO CC

GO:0005634 [list] [network] nucleus

(10793 genes)

IDA ISM

GO MF

GO:0000976 [list] [network] transcription regulatory region sequence-specific DNA binding	(204 genes)	IPI
GO:0042802 [list] [network] identical protein binding	(288 genes)	IPI
GO:0046983 [list] [network] protein dimerization activity	(570 genes)	IEA
GO:0044212 [list] [network] transcription regulatory region DNA binding	(871 genes)	IPI
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1599 genes)	ISS
GO:0003677 [list] [network] DNA binding	(2280 genes)	IDA
GO:0005515 [list] [network] protein binding	(4605 genes)	IPI

KEGG

ath04075 [list] [network] Plant hormone signal transduction (273 genes)

ath04712 [list] [network] Circadian rhythm - plant (36 genes)

Protein

NP_001318964.1 NP_001318965.1 NP_001322700.1 NP_001322701.1 NP_172424.1 NP_849626.1

BLAST

NP_001318964.1 NP_001318965.1 NP_001322700.1 NP_001322701.1 NP_172424.1 NP_849626.1

Orthologous

[Ortholog page] LOC4327916 (osa) LOC7486837 (ppo) LOC11406493 (mtr) LOC11427226 (mtr) LOC100247781 (vvi) LOC100253874 (vvi) LOC100279991 (zma) LOC100382453 (zma) LOC100794974 (gma) LOC100820151 (gma) LOC101267355 (sly) LOC102659557 (gma) LOC103843349 (bra) LOC103871725 (bra)

Subcellular
localization
wolf

nucl 10	(predict for NP_001318964.1)
nucl 10	(predict for NP_001318965.1)
nucl 10	(predict for NP_001322700.1)
nucl 10	(predict for NP_001322701.1)
nucl 10	(predict for NP_172424.1)
nucl 10	(predict for NP_849626.1)

Subcellular
localization
TargetP

other 3	(predict for NP_001318964.1)
other 3	(predict for NP_001318965.1)
other 3	(predict for NP_001322700.1)
other 3	(predict for NP_001322701.1)
other 3	(predict for NP_172424.1)
other 3	(predict for NP_849626.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	7
ath04016	MAPK signaling pathway - plant	4

Genes directly connected with PIF3 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
5.9	ERS2	ethylene response sensor 2	[detail]	839549
5.9	BEE3	BR enhanced expression 3	[detail]	843719
5.3	ARL	ARGOS-like protein	[detail]	819014
4.7	ORP4C	OSBP(oxysterol binding protein)-related protein 4C	[detail]	835830
4.7	RLP1	receptor like protein 1	[detail]	837251
3.6	AT5G10946	hypothetical protein	[detail]	6241503

Coexpressed
gene list

[Coexpressed gene list for PIF3]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

264510_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

264510_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

264510_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	837479
Refseq ID (protein)	NP_001318964.1
	NP_001318965.1
	NP_001322700.1
	NP_001322701.1
	NP_172424.1
	NP_849626.1

The preparation time of this page was 0.3 [sec].