[←][→] ath   AT1G22020 Gene
functional annotation
Function   serine hydroxymethyltransferase 6  
GO BP
GO:0006565 [list] [network] L-serine catabolic process  (7 genes)  IBA  
GO:0019264 [list] [network] glycine biosynthetic process from serine  (7 genes)  IBA  
GO:1904482 [list] [network] cellular response to tetrahydrofolate  (7 genes)  IBA  
GO:0046655 [list] [network] folic acid metabolic process  (13 genes)  IBA  
GO:0035999 [list] [network] tetrahydrofolate interconversion  (14 genes)  IEA  
GO:0006544 [list] [network] glycine metabolic process  (17 genes)  IBA  
GO:0006730 [list] [network] one-carbon metabolic process  (29 genes)  IBA  
GO:0046653 [list] [network] tetrahydrofolate metabolic process  (29 genes)  IBA  
GO CC
GO:0009507 [list] [network] chloroplast  (5095 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IEA  
GO MF
GO:0004372 [list] [network] glycine hydroxymethyltransferase activity  (7 genes)  IBA  
GO:0070905 [list] [network] serine binding  (7 genes)  IBA  
GO:0016597 [list] [network] amino acid binding  (26 genes)  IBA  
GO:0050897 [list] [network] cobalt ion binding  (51 genes)  IBA  
GO:0030170 [list] [network] pyridoxal phosphate binding  (84 genes)  IBA  
GO:0008270 [list] [network] zinc ion binding  (554 genes)  IBA  
KEGG ath00260 [list] [network] Glycine, serine and threonine metabolism (70 genes)
ath00460 [list] [network] Cyanoamino acid metabolism (69 genes)
ath00630 [list] [network] Glyoxylate and dicarboxylate metabolism (78 genes)
ath00670 [list] [network] One carbon pool by folate (20 genes)
ath01200 [list] [network] Carbon metabolism (273 genes)
ath01230 [list] [network] Biosynthesis of amino acids (251 genes)
Protein NP_001323098.1  NP_173621.1 
BLAST NP_001323098.1  NP_173621.1 
Orthologous [Ortholog page] SHM7 (ath)  LOC4324773 (osa)  LOC4338868 (osa)  LOC11420162 (mtr)  LOC11424199 (mtr)  LOC100191532 (zma)  LOC100241225 (vvi)  LOC100267713 (vvi)  LOC100286146 (zma)  LOC100776419 (gma)  LOC100793208 (gma)  LOC100799472 (gma)  LOC100810926 (gma)  LOC101250548 (sly)  LOC103833575 (bra)  LOC103869084 (bra) 
Subcellular
localization
wolf
nucl 6,  cyto 1,  cysk 1,  cysk_plas 1  (predict for NP_001323098.1)
nucl 6,  cyto 1,  cysk 1,  cysk_plas 1  (predict for NP_173621.1)
Subcellular
localization
TargetP
other 4,  chlo 3  (predict for NP_001323098.1)
other 4,  chlo 3  (predict for NP_173621.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 3
Genes directly connected with SHM6 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.0 AT2G44140 Peptidase family C54 protein [detail] 819020
6.8 AT3G52250 Duplicated homeodomain-like superfamily protein [detail] 824390
6.2 AT1G51350 ARM repeat superfamily protein [detail] 841558
Coexpressed
gene list		 [Coexpressed gene list for SHM6]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
255946_at
255946_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
255946_at
255946_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
255946_at
255946_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 838807      
Refseq ID (protein) NP_001323098.1 
NP_173621.1 


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