[←][→] ath   At1g80070 Gene
functional annotation
Function   Pre-mRNA-processing-splicing factor    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0000380 [list] [network] alternative mRNA splicing, via spliceosome  (10 genes)  IMP  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (105 genes)  IMP  
GO CC
GO:0005829 [list] [network] cytosol  (2559 genes)  RCA  
GO:0005739 [list] [network] mitochondrion  (4228 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0008237 [list] [network] metallopeptidase activity  (53 genes)  IEA  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath03040 [list] [network] Spliceosome (203 genes)
Protein NP_178124.2 
BLAST NP_178124.2 
Orthologous [Ortholog page] AT4G38780 (ath)  LOC4337900 (osa)  LOC4340248 (osa)  LOC11421219 (mtr)  LOC11425902 (mtr)  LOC18096703 (ppo)  LOC100804026 (gma)  LOC100814404 (gma)  LOC101261833 (sly)  LOC103857797 (bra)  LOC103865106 (bra)  LOC123103608 (tae)  LOC123111825 (tae)  LOC123121383 (tae)  LOC123149724 (tae)  LOC123157464 (tae)  LOC123165098 (tae)  LOC123395320 (hvu)  LOC123407132 (hvu) 
Subcellular
localization
wolf
cyto 8,  nucl 1  (predict for NP_178124.2)
Subcellular
localization
TargetP
chlo 6,  other 4  (predict for NP_178124.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03013 Nucleocytoplasmic transport 3
Genes directly connected with SUS2 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
17.7 emb1507 U5 small nuclear ribonucleoprotein helicase [detail] 838690
14.9 AT2G17930 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain-containing protein [detail] 816303
13.0 BIG auxin transport protein (BIG) [detail] 820398
12.9 G2484-1 G2484-1 protein [detail] 827445
12.4 ILA ILITYHIA [detail] 842787
12.3 AT4G36080 phosphotransferases/inositol or phosphatidylinositol kinase [detail] 829764
11.8 NRPB1 RNA polymerase II large subunit [detail] 829734
10.5 EMB2016 embryo defective 2016 [detail] 819736
10.1 PUR4 purine biosynthesis 4 [detail] 843766
9.7 SAP130b Cleavage and polyadenylation specificity factor (CPSF) A subunit protein [detail] 824688
9.6 SAR3 SUPPRESSOR OF AUXIN RESISTANCE 3 [detail] 844407
9.5 LNO1 Nuclear pore complex protein [detail] 842002
8.7 ABO1 IKI3 family protein [detail] 831213
8.5 CAND1 cullin-associated and neddylation dissociated [detail] 814786
7.9 VCR varicose-like protein [detail] 820529
7.1 GSL12 glucan synthase-like 12 [detail] 831140
6.5 EMB3142 nuclear pore complex protein (DUF3414) [detail] 835195
6.2 AGO1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase [detail] 841262
Coexpressed
gene list		 [Coexpressed gene list for SUS2]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
262068_at
262068_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
262068_at
262068_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
262068_at
262068_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 844347      
Refseq ID (protein) NP_178124.2 


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