[←][→] ath   At3g50100 Gene
functional annotation
Function   small RNA degrading nuclease 1      
GO BP
GO:0010587 [list] [network] miRNA catabolic process  (8 genes)  IDA  
GO CC
GO:0005737 [list] [network] cytoplasm  (13880 genes)  ISM  
GO MF
GO:0044748 [list] [network] 3'-5'-exoribonuclease activity involved in mature miRNA 3'-end processing  (1 genes)  IDA  
GO:0000175 [list] [network] 3'-5'-exoribonuclease activity  (8 genes)  IDA  
GO:0035198 [list] [network] miRNA binding  (11 genes)  IPI  
GO:0008408 [list] [network] 3'-5' exonuclease activity  (18 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath03008 [list] [network] Ribosome biogenesis in eukaryotes (96 genes)
Protein NP_001327187.1  NP_190579.2 
BLAST NP_001327187.1  NP_190579.2 
Orthologous [Ortholog page] AT3G50090 (ath)  SDN2 (ath)  SDN3 (ath)  LOC4337228 (osa)  LOC7483093 (ppo)  LOC25485770 (mtr)  LOC100785565 (gma)  LOC101248438 (sly)  LOC103827874 (bra)  LOC103829525 (bra)  LOC103829878 (bra)  LOC103840928 (bra)  LOC112998160 (gma)  LOC123047099 (tae)  LOC123050356 (tae)  LOC123050358 (tae)  LOC123190761 (tae)  LOC123428130 (hvu) 
Subcellular
localization
wolf
chlo 4,  cyto 2,  mito 1,  cyto_nucl 1,  cyto_plas 1  (predict for NP_001327187.1)
cyto_nucl 4,  nucl 4,  cyto 4,  chlo 1,  cysk 1,  E.R._vacu 1  (predict for NP_190579.2)
Subcellular
localization
TargetP
other 9  (predict for NP_001327187.1)
other 8  (predict for NP_190579.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
Genes directly connected with SDN1 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
5.5 AT2G18850 SET domain-containing protein [detail] 816400
5.5 AT3G56120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [detail] 824778
5.0 AT3G58930 F-box/RNI-like superfamily protein [detail] 825062
Coexpressed
gene list		 [Coexpressed gene list for SDN1]
Gene expression
All samples [Expression pattern for all samples]
Link to other DBs
Entrez Gene ID 824172      
Refseq ID (protein) NP_001327187.1 
NP_190579.2 


The preparation time of this page was 0.1 [sec].