[][] ath   AT4G20830 Gene
functional annotation
Function   FAD-binding Berberine family protein
GO BP
GO:0006979 [list] [network] response to oxidative stress  (442 genes)  IEP  
GO:0050832 [list] [network] defense response to fungus  (517 genes)  IMP  
GO:0055114 [list] [network] oxidation-reduction process  (1468 genes)  IEA  
GO CC
GO:0009505 [list] [network] plant-type cell wall  (220 genes)  IDA  
GO:0048046 [list] [network] apoplast  (443 genes)  IDA  
GO:0009506 [list] [network] plasmodesma  (962 genes)  IDA  
GO:0005773 [list] [network] vacuole  (1133 genes)  IDA  
GO:0005829 [list] [network] cytosol  (3506 genes)  HDA IDA  
GO:0005886 [list] [network] plasma membrane  (3771 genes)  IDA  
GO:0005739 [list] [network] mitochondrion  (4405 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5095 genes)  ISM  
GO MF
GO:0016899 [list] [network] oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor  (24 genes)  IDA  
GO:0071949 [list] [network] FAD binding  (68 genes)  IEA  
KEGG
Protein NP_193815.2  NP_974580.1 
BLAST NP_193815.2  NP_974580.1 
Orthologous [Ortholog page] AT4G20840 (ath)AT1G11770 (ath)AT1G01980 (ath)LOC7480401 (ppo)LOC11407647 (mtr)LOC11420001 (mtr)LOC25493364 (mtr)LOC100245607 (vvi)LOC100246147 (vvi)LOC100249571 (vvi)LOC100264985 (vvi)LOC100775893 (gma)LOC100776438 (gma)LOC100781731 (gma)LOC100788228 (gma)LOC100788233 (gma)LOC100796809 (gma)LOC100797188 (gma)LOC100797739 (gma)LOC100813175 (gma)LOC101264571 (sly)LOC103834173 (bra)LOC103850258 (bra)LOC103858408 (bra)LOC103861201 (bra)LOC103861202 (bra)LOC103871928 (bra)LOC112421407 (mtr)
Subcellular
localization
wolf
chlo 6,  E.R. 1,  nucl 1,  extr 1,  pero 1,  E.R._vacu 1,  E.R._plas 1,  cyto_E.R. 1  (predict for NP_193815.2)
chlo 6,  E.R. 2,  extr 1,  pero 1  (predict for NP_974580.1)
Subcellular
localization
TargetP
scret 5  (predict for NP_193815.2)
scret 5  (predict for NP_974580.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04626 Plant-pathogen interaction 5
ath04016 MAPK signaling pathway - plant 2
Genes directly connected with AT4G20830 on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
6.7 CRK11 cysteine-rich RLK (RECEPTOR-like protein kinase) 11 [detail] 828418
6.2 AT1G19020 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase [detail] 838483
6.0 BIR1 BAK1-interacting receptor-like kinase 1 [detail] 834892
5.3 AT4G20840 FAD-binding Berberine family protein [detail] 827832
Coexpressed
gene list
[Coexpressed gene list for AT4G20830]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
254432_at
254432_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
254432_at
254432_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
254432_at
254432_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 827831    
Refseq ID (protein) NP_193815.2 
NP_974580.1 


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