[←][→] ath   At4g34640 Gene
functional annotation
Function   squalene synthase 1      
GO BP
GO:0016126 [list] [network] sterol biosynthetic process  (23 genes)  TAS  
GO:0008610 [list] [network] lipid biosynthetic process  (657 genes)  IEA  
GO CC
GO:0005789 [list] [network] endoplasmic reticulum membrane  (108 genes)  IDA TAS  
GO:0005783 [list] [network] endoplasmic reticulum  (856 genes)  HDA IDA  
GO:0005886 [list] [network] plasma membrane  (2529 genes)  HDA  
GO:0005739 [list] [network] mitochondrion  (4228 genes)  ISM  
GO MF
GO:0004310 [list] [network] farnesyl-diphosphate farnesyltransferase activity  (2 genes)  IDA ISS  
GO:0051996 [list] [network] squalene synthase activity  (2 genes)  IDA  
KEGG ath00100 [list] [network] Steroid biosynthesis (36 genes)
ath00909 [list] [network] Sesquiterpenoid and triterpenoid biosynthesis (23 genes)
Protein NP_001329728.1  NP_195190.1 
BLAST NP_001329728.1  NP_195190.1 
Orthologous [Ortholog page] LOC547940 (gma)  SQS2 (ath)  LOC4334492 (osa)  LOC4342663 (osa)  LOC7461247 (ppo)  LOC7494303 (ppo)  LOC11441556 (mtr)  SQS1 (sly)  LOC100775983 (gma)  SQS2 (sly)  LOC103834400 (bra)  LOC103836007 (bra)  LOC103836099 (bra)  LOC103862364 (bra)  LOC123105516 (tae)  LOC123452848 (hvu) 
Subcellular
localization
wolf
chlo 3,  cyto 2,  chlo_mito 2,  cyto_nucl 1,  vacu 1,  mito 1,  plas 1,  extr 1,  E.R._vacu 1  (predict for NP_001329728.1)
chlo 3,  nucl 2,  cyto 2,  cyto_nucl 2  (predict for NP_195190.1)
Subcellular
localization
TargetP
scret 8  (predict for NP_001329728.1)
other 8  (predict for NP_195190.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00900 Terpenoid backbone biosynthesis 5
ath00020 Citrate cycle (TCA cycle) 4
ath00100 Steroid biosynthesis 4
ath00280 Valine, leucine and isoleucine degradation 2
ath00650 Butanoate metabolism 2
Genes directly connected with SQS1 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
5.8 MVD1 mevalonate diphosphate decarboxylase 1 [detail] 818452
5.4 AT1G26640 Amino acid kinase family protein [detail] 839204
5.2 FPS1 farnesyl diphosphate synthase 1 [detail] 834828
Coexpressed
gene list		 [Coexpressed gene list for SQS1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
253206_at
253206_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
253206_at
253206_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
253206_at
253206_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 829616      
Refseq ID (protein) NP_001329728.1 
NP_195190.1 


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