[←][→] ath   AT5G42820 Gene
functional annotation
Function   Zinc finger C-x8-C-x5-C-x3-H type family protein  
GO BP
GO:0048573 [list] [network] photoperiodism, flowering  (67 genes)  IMP  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (172 genes)  IBA  
GO CC
GO:0089701 [list] [network] U2AF  (6 genes)  IBA  
GO:0016607 [list] [network] nuclear speck  (86 genes)  IEA  
GO:0005681 [list] [network] spliceosomal complex  (142 genes)  IBA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA ISM  
GO MF
GO:0030628 [list] [network] pre-mRNA 3'-splice site binding  (9 genes)  IBA  
GO:0003677 [list] [network] DNA binding  (2280 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_199096.1  NP_974870.1 
BLAST NP_199096.1  NP_974870.1 
Orthologous [Ortholog page] ATU2AF35A (ath)  LOC4339621 (osa)  LOC7474543 (ppo)  LOC7494732 (ppo)  LOC9268567 (osa)  LOC25487504 (mtr)  LOC100191858 (zma)  LOC100247727 (vvi)  LOC100266834 (vvi)  LOC100272749 (zma)  LOC100282114 (zma)  LOC100284238 (zma)  LOC100792507 (gma)  LOC100794975 (gma)  LOC100799606 (gma)  LOC101245917 (sly)  LOC101263952 (sly)  LOC103652188 (zma)  LOC103835383 (bra)  LOC103839277 (bra) 
Subcellular
localization
wolf
nucl 10  (predict for NP_199096.1)
nucl 10  (predict for NP_974870.1)
Subcellular
localization
TargetP
other 7,  chlo 3  (predict for NP_199096.1)
other 7,  chlo 3  (predict for NP_974870.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 3
ath03040 Spliceosome 3
Genes directly connected with U2AF35B on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.9 ATU2AF35A U2 snRNP auxiliary factor small subunit [detail] 839657
6.7 TIM17-2 translocase inner membrane subunit 17-2 [detail] 818317
6.6 TOPP7 Calcineurin-like metallo-phosphoesterase superfamily protein [detail] 826726
6.0 AT3G26430 GDSL-like Lipase/Acylhydrolase superfamily protein [detail] 822247
Coexpressed
gene list		 [Coexpressed gene list for U2AF35B]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
249164_at
249164_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
249164_at
249164_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
249164_at
249164_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 834293      
Refseq ID (protein) NP_199096.1 
NP_974870.1 


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