[←][→] ath   AT5G53490 Gene
functional annotation
Function   Tetratricopeptide repeat (TPR)-like superfamily protein  
GO BP
GO CC
GO:0009543 [list] [network] chloroplast thylakoid lumen  (59 genes)  IDA IEA  
GO:0031977 [list] [network] thylakoid lumen  (72 genes)  IDA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (373 genes)  IDA  
GO:0009534 [list] [network] chloroplast thylakoid  (474 genes)  IDA  
GO:0009579 [list] [network] thylakoid  (543 genes)  IDA  
GO:0009570 [list] [network] chloroplast stroma  (750 genes)  IDA  
GO:0005576 [list] [network] extracellular region  (3363 genes)  ISM  
GO:0009507 [list] [network] chloroplast  (5095 genes)  HDA IDA  
GO:0009536 [list] [network] plastid  (5519 genes)  HDA  
GO MF
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_001190531.1  NP_001330392.1  NP_200161.2  NP_851183.1 
BLAST NP_001190531.1  NP_001330392.1  NP_200161.2  NP_851183.1 
Orthologous [Ortholog page] LOC4349041 (osa)  LOC7464286 (ppo)  LOC25491136 (mtr)  LOC100194054 (zma)  LOC100267488 (vvi)  LOC100785667 (gma)  LOC100801521 (gma)  LOC101264410 (sly)  LOC103844824 (bra) 
Subcellular
localization
wolf
chlo 6,  E.R. 1,  E.R._vacu 1,  mito 1,  plas 1,  golg 1,  golg_plas 1,  mito_plas 1  (predict for NP_001190531.1)
chlo 6,  mito 1,  vacu 1  (predict for NP_001330392.1)
chlo 7,  mito 1,  vacu 1  (predict for NP_200161.2)
chlo 7,  mito 1,  vacu 1  (predict for NP_851183.1)
Subcellular
localization
TargetP
other 4  (predict for NP_001190531.1)
chlo 7  (predict for NP_001330392.1)
chlo 6  (predict for NP_200161.2)
chlo 6,  mito 3  (predict for NP_851183.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 2
Genes directly connected with AT5G53490 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.3 PPD6 thylakoid lumenal protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) [detail] 824832
7.7 AT5G02160 transmembrane protein [detail] 831910
7.4 AT3G23700 Nucleic acid-binding proteins superfamily [detail] 821951
7.3 AT1G73655 FKBP-like peptidyl-prolyl cis-trans isomerase family protein [detail] 843700
Coexpressed
gene list		 [Coexpressed gene list for AT5G53490]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
248224_at
248224_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
248224_at
248224_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
248224_at
248224_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 835431      
Refseq ID (protein) NP_001190531.1 
NP_001330392.1 
NP_200161.2 
NP_851183.1 


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