[←][→] ath   AT5G55670 Gene
functional annotation
Function   RNA-binding (RRM/RBD/RNP motifs) family protein  
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
KEGG ath03015 [list] [network] mRNA surveillance pathway (115 genes)
Protein NP_001190548.1  NP_200378.1 
BLAST NP_001190548.1  NP_200378.1 
Orthologous [Ortholog page] AT1G13190 (ath)  LOC4345901 (osa)  LOC4347363 (osa)  LOC7460729 (ppo)  LOC7473194 (ppo)  LOC25489148 (mtr)  LOC25489149 (mtr)  LOC100246290 (vvi)  LOC100268141 (vvi)  LOC100782869 (gma)  LOC100811056 (gma)  LOC100813702 (gma)  LOC100813748 (gma)  LOC101251182 (sly)  LOC101251491 (sly)  LOC101251795 (sly)  LOC103641415 (zma)  LOC103641426 (zma)  LOC103845018 (bra)  LOC103851867 (bra)  LOC103856971 (bra)  LOC103871953 (bra) 
Subcellular
localization
wolf
nucl 7,  cyto 2  (predict for NP_001190548.1)
nucl 7,  cyto 2  (predict for NP_200378.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001190548.1)
other 9  (predict for NP_200378.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03015 mRNA surveillance pathway 2
Genes directly connected with AT5G55670 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
9.4 AT3G50690 Leucine-rich repeat (LRR) family protein [detail] 824233
9.0 CSP3 cold shock domain protein 3 [detail] 816297
8.9 TAF15b TBP-associated factor 15B [detail] 835960
8.5 STIPL1 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein [detail] 838277
8.0 KTF1 kow domain-containing transcription factor 1 [detail] 830308
8.0 EIF4B1 eukaryotic translation initiation factor 4B1 [detail] 822244
7.8 SMU2 RED family protein [detail] 817187
7.6 EIF4B2 eukaryotic initiation factor 4B2 [detail] 837859
7.5 AT1G13190 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 837877
7.4 AT3G47120 RNA recognition motif (RRM)-containing protein [detail] 823865
6.8 HSI2 B3 domain-containing transcription repressor VAL1 [detail] 817597
5.7 AT5G12100 pentatricopeptide (PPR) repeat-containing protein [detail] 831083
5.2 BAG7 BCL-2-associated athanogene 7 [detail] 836360
Coexpressed
gene list		 [Coexpressed gene list for AT5G55670]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
248071_at
248071_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
248071_at
248071_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
248071_at
248071_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 835661      
Refseq ID (protein) NP_001190548.1 
NP_200378.1 


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