cis; AGCCGCC

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
    AGCCGCC AGCBOXNPGLB [ref] [ref] [ref] [ref] [ref] [ref]
TAAGAGCCGCC EREGCC [ref] [ref] [ref] [ref] [ref] [ref] [ref]
TAARAGCCGCC PR2GCNT [ref]
     GCCGCC GCCCORE [ref] [ref]

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of AGCCGCC

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of AGCCGCC.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.58At1g06160ethylene-responsive factor, putative AP2-EREBP
0.53At1g18570myb family transcription factor (MYB51) ((MYB51)) MYB
0.50At3g01970WRKY family transcription factor ((WRKY45)) WRKY
0.48At5g07100WRKY family transcription factor ((WRKY26)) WRKY
0.48At1g67970heat shock factor protein, putative (HSF5) / heat shock transcription factor, putative (HSTF5) ((AT-HSFA8)) HSF
0.45At4g18880heat shock transcription factor 21 (HSF21) ((AT-HSFA4A)) HSF
0.45At3g10500no apical meristem (NAM) family protein NAC
0.44At5g13080WRKY family transcription factor ((WRKY75)) WRKY
0.43At5g63790no apical meristem (NAM) family protein NAC
0.42At2g30250WRKY family transcription factor ((WRKY25)) WRKY
0.42At2g31230ethylene-responsive factor, putative AP2-EREBP
0.41At2g43000no apical meristem (NAM) family protein NAC
0.41At1g62300WRKY family transcription factor ((WRKY6)) WRKY
0.41At2g18670zinc finger (C3HC4-type RING finger) family protein C3H
-0.41At1g08000zinc finger (GATA type) family protein C2C2-Gata

link to other 304 cis elements in ATTED

similar seq.
←AGCCGCC→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; GGCGGCT
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
AGCCGCC1.000.06123
GCCGCCT0.840.07106
ACTTTGA0.810.0692
CTGGCCG0.760.08104
TTGACTT0.760.0983
TTTGACT0.740.0897
GACTTTT0.740.08142
AAGTCAA0.720.08125
GTTGACT0.720.0691
TGACTTT0.720.0875