cis; GCGTGTT

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
no correspondence

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of GCGTGTT

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of GCGTGTT.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.51At1g67970heat shock factor protein, putative (HSF5) / heat shock transcription factor, putative (HSTF5) ((AT-HSFA8)) HSF
0.49At4g17230scarecrow-like transcription factor 13 (SCL13) GRAS
0.46At2g30250WRKY family transcription factor ((WRKY25)) WRKY
0.44At2g18670zinc finger (C3HC4-type RING finger) family protein C3H
0.44At5g66070zinc finger (C3HC4-type RING finger) family protein C3H
0.43At1g08900sugar transporter-related C2H2
0.42At5g63790no apical meristem (NAM) family protein NAC
0.42At5g67300myb family transcription factor MYB
0.41At4g37260myb family transcription factor (MYB73) MYB
0.41At5g05410DRE-binding protein (DREB2A) ((DREB2A)) AP2-EREBP
0.41At1g19310zinc finger (C3HC4-type RING finger) family protein C3H
0.40At4g18880heat shock transcription factor 21 (HSF21) ((AT-HSFA4A)) HSF
0.40At1g49720ABA-responsive element-binding protein / abscisic acid responsive elements-binding factor (ABRE) ((ABF1)) bZIP

link to other 304 cis elements in ATTED

similar seq.
←GCGTGTT→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; AACACGC
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
GCGTGTT1.000.06162
GCCGCCT0.670.07106
ATATCTT0.660.0779
AATATCT0.660.1480
AAATATC0.660.1477
CACACGT0.640.0670
AAAATAT0.640.07118
TGACTTT0.630.0875
AAAAGTC0.620.08170
CCGTGTT0.610.08145