CoexViewer

Coexpression detail for AT5G04960 and EXT6
Species Symbol Function* Entrez Gene ID* Other ID Selected probe Expression level (percentile) coex z ath-u.c4-0 coex z ath-r.c6-0 coex z ath-m.c9-0 coex z ath-m.c4-2_tis coex z ath-m.c4-2_str coex z ath-m.c4-2_hor coex z ath-m.c4-2_bio coex z ath-m.c4-2_lig coex z ath-e.c1-0
ath AT5G04960 Plant invertase/pectin methylesterase inhibitor superfamily 830378 At5g04960 0.06 12.09 11.63 9.26 3.75 3.61 3.63 0.02 3.53 8.17
ath EXT6 Proline-rich extensin-like family protein 817037 At2g24980 0.06
Platform:

coex z = 11.6331



Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.

Sample contribution score* 830378
(z-scored expression)		 817037
(z-scored expression)		 Experiment ID Sample ID Source Name in annotation
85.6 8.2 10.5 SRP154321 SRR7535944 Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [Timecourse]
78.9 -10.5 -7.5 SRP277946 SRR12469767 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
57.7 7.2 8.0 SRP091641 SRR4426738 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
50.0 -6.6 -7.5 SRP277946 SRR12469639 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
43.8 6.0 7.3 ERP015521 ERR1406297 Leaf transcriptomes of Arabidopsis thaliana colonized by representative phyllosphere commensals alone and in combination with the pathogen Pseudomonas syringae DC3000
36.7 6.0 6.1 SRP326522 SRR15015712 Cell-wall damage activates DOF transcription factors to promote wound healing and tissue regeneration in Arabidopsis thaliana
36.4 -5.5 -6.6 SRP277946 SRR12469640 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
35.4 5.8 6.1 SRP097877 SRR5205698 An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
32.2 5.6 5.8 SRP091641 SRR4426967 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
30.9 5.6 5.5 SRP162520 SRR7899132 Transcriptome-wide analysis of gene expression using detached first-pair rosette leaves before culture (time 0), at 10min to 12h after detachment Col-0, coi1-2 and sdg8-2 seedlings.
30.8 4.1 7.6 SRP199288 SRR9113092 In Arabidopsis hybrids and Hybrid Mimics up-regulation of cell wall biogenesis is associated with increased plant size
26.6 5.3 5.0 SRP346154 SRR16948992 Plants grow in lunar regolith
24.8 5.6 4.5 SRP091641 SRR4426719 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
23.8 5.3 4.5 SRP112501 SRR5831044 Combining chemical and genetic approaches to increase drought resistance in plants
23.8 4.4 5.4 SRP102178 SRR5360779 A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
23.5 4.7 5.0 SRP306749 SRR13724781 The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis [RNA-seq_11]
22.0 5.6 3.9 SRP122518 SRR6230503 Potential role of the CBF Pathway contributing to local adaptation of ecotypes collected from Italy and Sweden
20.6 4.5 4.6 SRP325022 SRR14877257 Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells
18.8 -3.0 -6.4 SRP090458 SRR4295856 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat]
18.6 -4.4 -4.3 SRP277946 SRR12470084 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
18.2 4.2 4.3 SRP282437 SRR12642100 Complementary capability of cell division and photosynthesis triggers growth vigor in Arabidopsis hybrids
18.1 4.8 3.8 SRP306740 SRR13724702 The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis [RNA-seq_16]
18.0 5.0 3.6 SRP136269 SRR6880728 Cold priming and triggering of Arabidopsis accessions
17.8 4.2 4.3 SRP282437 SRR12642102 Complementary capability of cell division and photosynthesis triggers growth vigor in Arabidopsis hybrids
17.1 -4.6 -3.7 SRP150217 SRR7289601 Widespread inter-individual gene expression variability in Arabidopsis thaliana
17.1 4.4 3.8 SRP051764 SRR1744391 Hybrid Mimics and Hybrid Vigor in Arabidopsis (F6 data)
16.6 -4.7 -3.6 SRP323348 SRR14766017 Differentially expressed transcriptomes of NADases mutant in Arabidopsis
16.0 3.9 4.1 SRP282437 SRR12642101 Complementary capability of cell division and photosynthesis triggers growth vigor in Arabidopsis hybrids
15.5 4.5 3.4 SRP306748 SRR13724776 The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis [RNA-seq_9_12]
15.4 4.1 3.8 ERP115370 ERR3333408 Arabidopsis tissue atlas
15.1 -3.8 -4.0 SRP279325 SRR12546072 Coordination of microbe-host homeostasis via a crosstalk with plant innate immunity
15.1 -3.8 -4.0 SRP308553 SRR13805909 The lncRNA APOLO and the methylcytosine-binding protein VIM1 are thermomorphogenesis regulators
15.0 5.1 3.0 SRP007484 SRR309183 Seedling transcriptome sequencing of the Arabidopsis thaliana MAGIC founder accessions
15.0 -3.9 -3.8 SRP187156 SRR8648403 Genome-wide profiling of Arabidopsis thaliana Col-0 and ein2/jar1 host responses to Macrophomina phaseolina infection
14.9 4.0 3.8 SRP306751 SRR13724815 The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis [RNA-seq_17-18]
14.8 4.4 3.4 SRP018034 SRR2079798 Time-course transcriptome of wild-type Arabidopsis leaf
14.7 4.2 3.5 SRP166137 SRR8078937 RNA-seq data on Botrytis treated Col-0, era1-2, snrk2.236 and lacs2.3 (Arabidopsis thaliana)
14.4 -4.9 -3.0 SRP114806 SRR5894583 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
14.4 -3.5 -4.1 SRP073711 SRR3418027 RNA-seq of abscisic acid-reponsive transcription factors
14.2 3.8 3.8 SRP125057 SRR6294497 Genome-wide mapping of demethylase, REF6 binding targets and H3K27me3 marked regions as well as expression analysis in various Arabidopsis genetic backgrounds [RNA-seq]
13.9 5.3 2.6 SRP097877 SRR5205776 An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
13.6 -3.7 -3.6 SRP018266 SRR653579 Genome-wide analysis of LINK1 and LINK2 effects on the Arabidopsis transcriptome
13.6 3.9 3.5 SRP125388 SRR6312347 Transcriptome dynamics at Arabidopsis graft junctions reveal an intertissue recognition mechanism that activates vascular regeneration
13.6 3.5 3.8 ERP115136 ERR3310289 RNA-seq of circadian timeseries sampling (LL2-3) of 13-14 day old Arabidopsis thaliana Col-0 (24 h to 68 h, sampled every 4 h)
13.6 3.4 3.9 SRP253504 SRR11359541 Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves
13.5 -4.3 -3.2 SRP278468 SRR12495354 Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions
13.4 3.9 3.4 SRP277946 SRR12470180 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
13.0 -4.9 -2.7 SRP114806 SRR5894585 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
12.9 -3.6 -3.6 SRP201971 SRR9331161 RNA-seq analysis of transcriptome reprofiling triggered by different pattern-recognition receptor types
12.8 3.7 3.5 ERP115370 ERR3333409 Arabidopsis tissue atlas
12.8 4.0 3.2 SRP049951 SRR1654359 Transcriptional response to zebularine and mitomycin C (MMC) in wild type and ATR deficient Arabidopsis thaliana plants
12.7 -2.9 -4.3 SRP285119 SRR12698818 Time of day prioritizes the pool of translating mRNAs in response to heat stress
12.7 4.5 2.8 SRP173235 SRR8310105 Mediator12 and 13 act as conditional anti-silencing factors in Arabidopsis [RNA-seq]
12.6 3.7 3.4 ERP115370 ERR3333396 Arabidopsis tissue atlas
12.5 -3.1 -4.0 SRP219673 SRR10037584 Characterization of Arabidopsis thaliana promoter bidirectionality and antisense RNAs by depletion of nuclear RNA decay pathways [RNA-seq]
12.4 3.7 3.4 SRP125388 SRR6312348 Transcriptome dynamics at Arabidopsis graft junctions reveal an intertissue recognition mechanism that activates vascular regeneration
12.3 -3.5 -3.5 SRP044746 SRR3046819 Cryptochromes interact directly with PIFs to control plant growth in limiting blue light
12.3 -3.2 -3.8 SRP133385 SRR6767656 Time-course transcriptomic analysis of Arabidopsis response to high light stress
11.9 3.8 3.1 SRP125388 SRR6312358 Transcriptome dynamics at Arabidopsis graft junctions reveal an intertissue recognition mechanism that activates vascular regeneration
11.8 -3.4 -3.5 ERP108714 ERR2576892 Transcriptome analysis of khd-1, spen-1 and hub1-4 Arabidopsis mutants
11.7 3.2 3.6 ERP115370 ERR3333403 Arabidopsis tissue atlas
11.7 3.6 3.3 SRP172049 SRR8271803 Arabidopsis SWR1-associated protein methyl-CpG-binding domain 9 is required for histone H2A.Z deposition. [RNA-Seq]
11.7 -3.7 -3.2 SRP277946 SRR12469859 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.6 -3.4 -3.4 SRP223642 SRR10200443 Control of root thermomorphogenesis by systemic and local regulatory signals (18h RNA-seq)
11.4 -4.3 -2.7 SRP017386 SRR627682 Transcriptome-wide analysis of gene expression in dark-grown WT and pif mutant seedlings
11.3 3.2 3.5 SRP254177 SRR11429303 Time course of brassinolide treatment on Arabidopsis seedlings
11.3 -2.9 -3.9 SRP188202 SRR8714020 Genome-wide binding of Arabidopsis growth regulating factors uncovers their broad regulatory functions in plant growth, development and stress response [RNA-Seq]
11.2 -3.6 -3.1 SRP234996 SRR10603594 Naked1 targets Topless to up-regulate Auxin signaling and suppress immunity
11.1 -3.3 -3.4 SRP234996 SRR10603595 Naked1 targets Topless to up-regulate Auxin signaling and suppress immunity
11.1 -3.9 -2.9 SRP135665 SRR6833099 Arabidopsis SE coordinates histone methyltransferases ATXR5/6 and RNA processing factor RDR6 to regulate transposon expression [RNA-Seq]
11.0 3.6 3.1 SRP125388 SRR6312357 Transcriptome dynamics at Arabidopsis graft junctions reveal an intertissue recognition mechanism that activates vascular regeneration
10.8 -3.1 -3.4 SRP105346 SRR5483619 The developmental regulator PKL is required to maintain correct DNA methylation patterns at RNA-directed DNA methylation loci (RNA-Seq)
10.7 -4.3 -2.5 SRP017386 SRR627681 Transcriptome-wide analysis of gene expression in dark-grown WT and pif mutant seedlings
10.6 3.2 3.3 SRP159279 SRR7775294 RNA-Seq on mpk8 and tcp14 mutants on dry and imbibited seeds - Dormancy release by phosphorylation
10.6 -3.1 -3.4 SRP323348 SRR14766024 Differentially expressed transcriptomes of NADases mutant in Arabidopsis
10.6 -3.4 -3.1 SRP161785 SRR7830354 Arabidopsis seedling hydroponic treatment with Streptomyces AGN23 culture supernatants
10.5 -2.6 -4.0 SRP277946 SRR12469871 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.1 3.4 3.0 SRP068171 SRR3318590 Arabidopsis thaliana cultivar:Col Transcriptome or Gene expression
10.0 -3.5 -2.9 SRP277943 SRR12469293 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of a community of commensal bacteria [RST]
10.0 -2.8 -3.6 SRP339340 SRR16119310 Single seeds exhibit transcriptional heterogeneity during secondary dormancy induction
10.0 -2.8 -3.6 SRP339340 SRR16119311 Single seeds exhibit transcriptional heterogeneity during secondary dormancy induction
10.0 -2.8 -3.6 SRP339340 SRR16119309 Single seeds exhibit transcriptional heterogeneity during secondary dormancy induction
Note: Samples whose contribution is more than 10 are outputted.



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