CoexViewer

Coexpression detail for AT5G04960 and AT2G47540
Species Symbol Function* Entrez Gene ID* Other ID Selected probe Expression level (percentile) coex z ath-u.c4-0 coex z ath-r.c6-0 coex z ath-m.c9-0 coex z ath-m.c4-1_notissue coex z ath-m.c4-2_tis coex z ath-m.c4-2_str coex z ath-m.c4-2_hor coex z ath-m.c4-2_bio coex z ath-m.c4-2_lig coex z ath-e.c1-0
ath AT5G04960 Plant invertase/pectin methylesterase inhibitor superfamily 830378 At5g04960 0.06 8.74 7.11 8.01 18.50 3.96 4.28 3.13 -0.79 1.66 4.80
ath AT2G47540 Pollen Ole e 1 allergen and extensin family protein 819367 At2g47540 0.06
Platform:

coex z = 7.1103



Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.

Sample contribution score* 830378
(z-scored expression)		 819367
(z-scored expression)		 Experiment ID Sample ID Source Name in annotation
123.5 -10.5 -11.8 SRP277946 SRR12469767 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
80.7 8.2 9.9 SRP154321 SRR7535942 Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [Timecourse]
80.7 8.2 9.9 SRP154321 SRR7535943 Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [Timecourse]
57.9 5.6 10.4 SRP091641 SRR4426967 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
46.2 -4.9 -9.5 SRP114806 SRR5894583 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
44.7 4.6 9.7 SRP097877 SRR5205655 An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
42.6 6.0 7.1 ERP015521 ERR1406297 Leaf transcriptomes of Arabidopsis thaliana colonized by representative phyllosphere commensals alone and in combination with the pathogen Pseudomonas syringae DC3000
37.9 -5.5 -6.9 SRP277946 SRR12469640 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
30.2 -6.6 -4.6 SRP277946 SRR12469639 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
28.6 6.0 4.7 SRP326522 SRR15015712 Cell-wall damage activates DOF transcription factors to promote wound healing and tissue regeneration in Arabidopsis thaliana
28.3 5.0 5.7 SRP136269 SRR6880728 Cold priming and triggering of Arabidopsis accessions
28.2 5.6 5.0 SRP162520 SRR7899132 Transcriptome-wide analysis of gene expression using detached first-pair rosette leaves before culture (time 0), at 10min to 12h after detachment Col-0, coi1-2 and sdg8-2 seedlings.
24.8 5.3 4.7 SRP112501 SRR5831044 Combining chemical and genetic approaches to increase drought resistance in plants
23.0 4.8 4.8 SRP306740 SRR13724702 The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis [RNA-seq_16]
22.0 5.3 4.1 SRP346154 SRR16948992 Plants grow in lunar regolith
21.6 4.7 4.6 SRP306749 SRR13724781 The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis [RNA-seq_11]
21.2 4.5 4.7 SRP325022 SRR14877257 Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells
20.6 4.2 4.9 SRP166137 SRR8078937 RNA-seq data on Botrytis treated Col-0, era1-2, snrk2.236 and lacs2.3 (Arabidopsis thaliana)
19.6 -4.7 -4.2 SRP323348 SRR14766017 Differentially expressed transcriptomes of NADases mutant in Arabidopsis
19.2 -4.6 -4.2 SRP150217 SRR7289601 Widespread inter-individual gene expression variability in Arabidopsis thaliana
19.2 4.2 4.6 SRP282437 SRR12642100 Complementary capability of cell division and photosynthesis triggers growth vigor in Arabidopsis hybrids
19.0 4.2 4.6 SRP282437 SRR12642102 Complementary capability of cell division and photosynthesis triggers growth vigor in Arabidopsis hybrids
18.5 4.4 4.2 SRP018034 SRR2079798 Time-course transcriptome of wild-type Arabidopsis leaf
18.3 -3.3 -5.5 SRP234996 SRR10603595 Naked1 targets Topless to up-regulate Auxin signaling and suppress immunity
18.2 -4.9 -3.7 SRP114806 SRR5894585 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
17.3 -3.2 -5.4 SRP277946 SRR12469643 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
16.1 -3.4 -4.8 SRP150217 SRR7289571 Widespread inter-individual gene expression variability in Arabidopsis thaliana
15.9 4.0 4.0 SRP049951 SRR1654359 Transcriptional response to zebularine and mitomycin C (MMC) in wild type and ATR deficient Arabidopsis thaliana plants
15.9 4.1 3.9 ERP115370 ERR3333408 Arabidopsis tissue atlas
15.7 4.5 3.5 SRP306748 SRR13724776 The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis [RNA-seq_9_12]
15.6 -3.8 -4.1 SRP308553 SRR13805909 The lncRNA APOLO and the methylcytosine-binding protein VIM1 are thermomorphogenesis regulators
15.6 -4.3 -3.7 SRP278468 SRR12495354 Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions
15.6 4.4 3.5 ERP114064 ERR3185034 RNAseq analysis of Arabidopsis cell suspension culture treated with IAA, RN3 and RN4
15.1 3.9 3.9 SRP282437 SRR12642101 Complementary capability of cell division and photosynthesis triggers growth vigor in Arabidopsis hybrids
14.9 3.8 3.9 SRP108634 SRR5646707 Locus-specific control of the de novo DNA methylation pathway [mRNA-seq]
14.5 3.9 3.8 SRP125388 SRR6312347 Transcriptome dynamics at Arabidopsis graft junctions reveal an intertissue recognition mechanism that activates vascular regeneration
14.1 -4.3 -3.3 SRP017386 SRR627681 Transcriptome-wide analysis of gene expression in dark-grown WT and pif mutant seedlings
13.9 4.4 3.1 SRP302122 SRR13450914 The CLASSY family controls tissue-specific DNA methylation patterns in Arabidopsis [RNA-seq]
13.7 3.6 3.8 SRP172049 SRR8271803 Arabidopsis SWR1-associated protein methyl-CpG-binding domain 9 is required for histone H2A.Z deposition. [RNA-Seq]
13.7 3.2 4.3 SRP173235 SRR8310112 Mediator12 and 13 act as conditional anti-silencing factors in Arabidopsis [RNA-seq]
13.5 -3.0 -4.6 SRP090458 SRR4295915 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat]
13.4 3.7 3.6 ERP115370 ERR3333409 Arabidopsis tissue atlas
13.2 3.8 3.5 SRP125388 SRR6312358 Transcriptome dynamics at Arabidopsis graft junctions reveal an intertissue recognition mechanism that activates vascular regeneration
13.0 3.7 3.5 SRP125388 SRR6312348 Transcriptome dynamics at Arabidopsis graft junctions reveal an intertissue recognition mechanism that activates vascular regeneration
12.9 3.7 3.5 ERP115370 ERR3333396 Arabidopsis tissue atlas
12.8 -3.9 -3.3 SRP187156 SRR8648403 Genome-wide profiling of Arabidopsis thaliana Col-0 and ein2/jar1 host responses to Macrophomina phaseolina infection
12.7 -3.0 -4.2 SRP101641 SRR5330634 Chloroplast signalling gates thermotolerance in Arabidopsis
12.5 -3.6 -3.5 SRP234996 SRR10603594 Naked1 targets Topless to up-regulate Auxin signaling and suppress immunity
12.4 3.1 4.1 SRP068652 SRR3109689 SHORT-ROOT Deficiency Alleviates the Cell Death Phenotype of the Arabidopsis catalase2 Mutant under Photorespiration-Promoting Conditions
12.4 3.6 3.5 SRP125388 SRR6312357 Transcriptome dynamics at Arabidopsis graft junctions reveal an intertissue recognition mechanism that activates vascular regeneration
12.1 -2.9 -4.2 SRP297920 SRR13253056 Transcript analysis under phosphate and iron deprivation in 7 day old Arabidopsis thaliana seedlings
11.8 4.3 2.8 SRP039091 SRR1179977 Transcriptomes for hybrids (F1s) between 18 Arabidopsis thaliana parents of the Multiparent Advanced Generation Inter-Cross (MAGIC) genetic mapping resource
11.8 -2.6 -4.5 SRP188809 SRR8749773 RNAseq of Arabidopsis wild-type (WT)-expressing aequorin, card1-1 mutant (WT-expressing aequorin background), card1-2 mutant (WT-expressing aequorin background) in response to 10 minute DMBQ or DMSO treatment
11.8 -3.6 -3.3 SRP201971 SRR9331181 RNA-seq analysis of transcriptome reprofiling triggered by different pattern-recognition receptor types
11.8 -3.6 -3.3 SRP201971 SRR9331189 RNA-seq analysis of transcriptome reprofiling triggered by different pattern-recognition receptor types
11.6 -3.3 -3.5 SRP158513 SRR7726620 The lamin-like LITTLE NUCLEI 1 (LINC1) regulates jasmonic acid signaling and innate immunity
11.3 3.4 3.3 SRP253504 SRR11359541 Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves
11.3 -2.8 -4.0 SRP357889 SRR17847298 Transcriptomic changes upon NaCl treatment dependent on GA biosynthesis and signaling.
11.3 -3.6 -3.1 SRP083970 SRR4115409 The Cytoplasmic mRNA Decay Landscape of Arabidopsis Seedlings [RNA-seq]
11.3 3.2 3.5 SRP297585 SRR13239290 mRNA profiling of Trihelix transcription factor ASIL mutants at the late heart stage embryos
11.2 -2.9 -3.9 SRP076846 SRR3707345 The MBD7 complex promotes expression of methylated transgenes without significantly altering their methylation status (mRNA-seq)
11.2 -3.5 -3.2 SRP114806 SRR5894633 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
11.2 3.2 3.5 SRP112501 SRR5831030 Combining chemical and genetic approaches to increase drought resistance in plants
11.2 -3.4 -3.3 ERP108714 ERR2576892 Transcriptome analysis of khd-1, spen-1 and hub1-4 Arabidopsis mutants
11.1 -2.0 -5.6 SRP114806 SRR5894551 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
11.1 3.2 3.4 ERP115370 ERR3333403 Arabidopsis tissue atlas
11.1 -3.5 -3.1 SRP044746 SRR3046819 Cryptochromes interact directly with PIFs to control plant growth in limiting blue light
11.1 -1.7 -6.4 SRP101641 SRR5330623 Chloroplast signalling gates thermotolerance in Arabidopsis
11.1 4.0 2.8 SRP306751 SRR13724815 The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis [RNA-seq_17-18]
11.0 2.7 4.0 SRP185814 SRR8570498 RNA-seq analysis reveals organ-specific cold response in Arabidopsis thaliana
10.9 -3.4 -3.2 SRP161785 SRR7830354 Arabidopsis seedling hydroponic treatment with Streptomyces AGN23 culture supernatants
10.9 -3.1 -3.5 SRP323348 SRR14766024 Differentially expressed transcriptomes of NADases mutant in Arabidopsis
10.8 -3.4 -3.2 SRP063017 SRR2221852 RNA-seq analysis of Arabidopsis thaliana wild-type roots and type-A arr3,4,5,6,7,8,9,15 mutant roots non-infected and infected with Heterodera schachtii nematodes
10.7 -2.9 -3.7 SRP188202 SRR8714020 Genome-wide binding of Arabidopsis growth regulating factors uncovers their broad regulatory functions in plant growth, development and stress response [RNA-Seq]
10.5 2.2 4.8 SRP044776 SRR1523884 High-resolution tissue-specific analysis of the Arabidopsis transcriptome in response to shade
10.5 -3.5 -3.0 SRP073711 SRR3418027 RNA-seq of abscisic acid-reponsive transcription factors
10.3 2.9 3.5 ERP106738 ERR2286752 Effects of FT on FD during the transition to flowering at the SAM in Arabidopsis thaliana
10.3 -3.1 -3.3 SRP212098 SRR9602182 Gene expression profiling study by RNA-seq for identifying genes associated with sound vibration in plant
10.2 -2.9 -3.6 SRP126574 SRR6369394 Transcriptional Regulation of Nitrogen and Nitrogen-Related Metabolism in Arabidopsis
10.2 -3.1 -3.3 SRP288674 SRR12903443 A. thaliana WT and ICT1 mutant treated vs. non treated with I3C
10.0 3.4 2.9 SRP166137 SRR8078928 RNA-seq data on Botrytis treated Col-0, era1-2, snrk2.236 and lacs2.3 (Arabidopsis thaliana)
Note: Samples whose contribution is more than 10 are outputted.



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