CoexViewer

Coexpression detail for AT5G04960 and AT4G08410
Species Symbol Function* Entrez Gene ID* Other ID Selected probe Expression level (percentile) coex z ath-u.c4-0 coex z ath-r.c6-0 coex z ath-m.c9-0 coex z ath-m.c4-2_tis coex z ath-m.c4-2_str coex z ath-m.c4-2_hor coex z ath-m.c4-2_bio coex z ath-m.c4-2_lig coex z ath-e.c1-0
ath AT5G04960 Plant invertase/pectin methylesterase inhibitor superfamily 830378 At5g04960 0.06 8.38 7.99 6.50 2.90 3.31 3.35 -0.71 3.71 7.00
ath AT4G08410 Proline-rich extensin-like family protein 826400 At4g08410 0.06
Platform:

coex z = 7.9916



Both axes are relative gene expression values in base-2 logarithm against the averaged expression levels of each gene.

Sample contribution score* 830378
(z-scored expression)		 826400
(z-scored expression)		 Experiment ID Sample ID Source Name in annotation
98.5 -10.5 -9.4 SRP277946 SRR12469767 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
62.4 -6.6 -9.4 SRP277946 SRR12469639 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
51.9 -5.5 -9.4 SRP277946 SRR12469640 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
36.4 7.2 5.1 SRP091641 SRR4426738 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
35.3 6.0 5.9 SRP326522 SRR15015712 Cell-wall damage activates DOF transcription factors to promote wound healing and tissue regeneration in Arabidopsis thaliana
32.9 5.5 6.0 SRP345854 SRR16934660 Phytochrome B regulates reactive oxygen signaling during stress in plants.
32.1 5.6 5.8 SRP091641 SRR4426967 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
29.6 5.6 5.3 SRP162520 SRR7899132 Transcriptome-wide analysis of gene expression using detached first-pair rosette leaves before culture (time 0), at 10min to 12h after detachment Col-0, coi1-2 and sdg8-2 seedlings.
24.3 5.3 4.6 SRP346154 SRR16948992 Plants grow in lunar regolith
22.1 -4.9 -4.5 SRP114806 SRR5894583 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
22.1 -4.9 -4.5 SRP114806 SRR5894585 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions
21.5 5.6 3.9 SRP091641 SRR4426772 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
21.5 5.6 3.9 SRP091641 SRR4426719 Time-resolved transcriptome analysis with genetic perturbations reveals a critical time window for effective plant immunity
19.6 6.0 3.3 SRP090913 SRR4360376 WallOmics
19.3 -3.0 -6.6 SRP090458 SRR4295856 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat]
19.2 5.3 3.6 SRP112501 SRR5831044 Combining chemical and genetic approaches to increase drought resistance in plants
18.6 4.7 4.0 SRP306749 SRR13724781 The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis [RNA-seq_11]
18.2 -4.7 -3.9 SRP323348 SRR14766017 Differentially expressed transcriptomes of NADases mutant in Arabidopsis
18.1 -3.6 -5.1 SRP101641 SRR5330627 Chloroplast signalling gates thermotolerance in Arabidopsis
17.9 4.8 3.7 SRP306740 SRR13724702 The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis [RNA-seq_16]
17.8 -4.6 -3.9 SRP150217 SRR7289601 Widespread inter-individual gene expression variability in Arabidopsis thaliana
17.7 4.2 4.2 SRP282437 SRR12642100 Complementary capability of cell division and photosynthesis triggers growth vigor in Arabidopsis hybrids
17.0 4.2 4.1 SRP282437 SRR12642102 Complementary capability of cell division and photosynthesis triggers growth vigor in Arabidopsis hybrids
16.9 3.8 4.5 SRP125057 SRR6294497 Genome-wide mapping of demethylase, REF6 binding targets and H3K27me3 marked regions as well as expression analysis in various Arabidopsis genetic backgrounds [RNA-seq]
16.6 4.4 3.7 SRP051764 SRR1744391 Hybrid Mimics and Hybrid Vigor in Arabidopsis (F6 data)
16.4 3.3 4.9 SRP047144 SRR1576251 Arabidopsis thaliana strain:Col-0 Transcriptome or Gene expression
15.8 4.6 3.4 SRP097877 SRR5205806 An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
15.7 4.1 3.8 ERP115370 ERR3333408 Arabidopsis tissue atlas
15.1 3.9 3.9 SRP282437 SRR12642101 Complementary capability of cell division and photosynthesis triggers growth vigor in Arabidopsis hybrids
15.0 -4.3 -3.5 SRP017386 SRR627681 Transcriptome-wide analysis of gene expression in dark-grown WT and pif mutant seedlings
14.9 4.6 3.2 SRP097877 SRR5205738 An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
14.9 -3.8 -3.9 SRP308553 SRR13805909 The lncRNA APOLO and the methylcytosine-binding protein VIM1 are thermomorphogenesis regulators
14.8 -3.2 -4.6 SRP110167 SRR5742217 mRNA-seq of Arabidopsis mutants of UPR modulators responding to UPR inducers
14.7 -3.9 -3.8 SRP187156 SRR8648403 Genome-wide profiling of Arabidopsis thaliana Col-0 and ein2/jar1 host responses to Macrophomina phaseolina infection
14.3 4.0 3.6 SRP049951 SRR1654359 Transcriptional response to zebularine and mitomycin C (MMC) in wild type and ATR deficient Arabidopsis thaliana plants
14.3 -3.8 -3.8 SRP279325 SRR12546072 Coordination of microbe-host homeostasis via a crosstalk with plant innate immunity
14.3 -3.6 -4.0 SRP201971 SRR9331161 RNA-seq analysis of transcriptome reprofiling triggered by different pattern-recognition receptor types
14.0 -3.6 -3.9 SRP083970 SRR4115409 The Cytoplasmic mRNA Decay Landscape of Arabidopsis Seedlings [RNA-seq]
14.0 3.8 3.7 SRP108634 SRR5646707 Locus-specific control of the de novo DNA methylation pathway [mRNA-seq]
13.8 3.8 3.6 SRP125388 SRR6312358 Transcriptome dynamics at Arabidopsis graft junctions reveal an intertissue recognition mechanism that activates vascular regeneration
13.4 -3.6 -3.7 SRP234996 SRR10603594 Naked1 targets Topless to up-regulate Auxin signaling and suppress immunity
13.3 4.4 3.0 SRP018034 SRR2079798 Time-course transcriptome of wild-type Arabidopsis leaf
13.0 3.7 3.5 ERP115370 ERR3333409 Arabidopsis tissue atlas
12.9 3.9 3.3 SRP125388 SRR6312347 Transcriptome dynamics at Arabidopsis graft junctions reveal an intertissue recognition mechanism that activates vascular regeneration
12.9 4.5 2.8 SRP306748 SRR13724776 The role of ATXR6 expression in modulating genome stability and transposable element repression in Arabidopsis [RNA-seq_9_12]
12.7 -3.9 -3.3 SRP135665 SRR6833099 Arabidopsis SE coordinates histone methyltransferases ATXR5/6 and RNA processing factor RDR6 to regulate transposon expression [RNA-Seq]
12.6 3.6 3.5 SRP125388 SRR6312357 Transcriptome dynamics at Arabidopsis graft junctions reveal an intertissue recognition mechanism that activates vascular regeneration
12.6 3.7 3.4 ERP115370 ERR3333396 Arabidopsis tissue atlas
12.5 -3.5 -3.6 SRP073711 SRR3418027 RNA-seq of abscisic acid-reponsive transcription factors
12.4 4.1 3.1 SRP361760 SRR18163181 The Dynamic Proteome in Arabidopsis Thaliana Early Embryogenesis
12.4 -3.2 -3.8 SRP133385 SRR6767656 Time-course transcriptomic analysis of Arabidopsis response to high light stress
12.3 4.4 2.8 SRP302122 SRR13450914 The CLASSY family controls tissue-specific DNA methylation patterns in Arabidopsis [RNA-seq]
12.2 -3.5 -3.4 SRP044746 SRR3046819 Cryptochromes interact directly with PIFs to control plant growth in limiting blue light
12.1 -3.3 -3.7 SRP234996 SRR10603595 Naked1 targets Topless to up-regulate Auxin signaling and suppress immunity
11.7 3.7 3.2 SRP125388 SRR6312348 Transcriptome dynamics at Arabidopsis graft junctions reveal an intertissue recognition mechanism that activates vascular regeneration
11.7 3.9 3.0 SRP277946 SRR12470180 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.4 -3.2 -3.6 SRP277946 SRR12469643 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
11.4 3.4 3.3 SRP253504 SRR11359541 Time-lapse RNA-seq analysis to study the gene networks in cell fate transition in de novo root regeneration from detached Arabidospis leaves
11.4 -3.7 -3.0 SRP018266 SRR653579 Genome-wide analysis of LINK1 and LINK2 effects on the Arabidopsis transcriptome
11.4 -3.1 -3.6 SRP105346 SRR5483619 The developmental regulator PKL is required to maintain correct DNA methylation patterns at RNA-directed DNA methylation loci (RNA-Seq)
11.2 -3.1 -3.6 SRP323348 SRR14766024 Differentially expressed transcriptomes of NADases mutant in Arabidopsis
11.2 -2.9 -3.9 SRP297920 SRR13253058 Transcript analysis under phosphate and iron deprivation in 7 day old Arabidopsis thaliana seedlings
10.7 -4.3 -2.5 SRP278468 SRR12495354 Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions
10.6 4.3 2.5 SRP090913 SRR4360374 WallOmics
10.6 3.6 2.9 SRP172049 SRR8271803 Arabidopsis SWR1-associated protein methyl-CpG-binding domain 9 is required for histone H2A.Z deposition. [RNA-Seq]
10.5 -3.0 -3.6 SRP090458 SRR4295915 RNA-seq of Arabidopsis thaliana seedlings growing in the presence of a bacterial synthetic community under full and low phosphate conditions [PBI_preTreat]
10.5 -3.3 -3.2 SRP252640 SRR11300784 XPO4 negatively regulates immune activation in the cpr5 mutant
10.4 3.2 3.2 SRP159279 SRR7775294 RNA-Seq on mpk8 and tcp14 mutants on dry and imbibited seeds - Dormancy release by phosphorylation
10.4 3.2 3.2 ERP115370 ERR3333403 Arabidopsis tissue atlas
10.4 -3.4 -3.1 ERP108714 ERR2576892 Transcriptome analysis of khd-1, spen-1 and hub1-4 Arabidopsis mutants
10.2 -2.6 -3.9 SRP083970 SRR4115346 The Cytoplasmic mRNA Decay Landscape of Arabidopsis Seedlings [RNA-seq]
10.2 5.1 2.0 SRP007484 SRR309183 Seedling transcriptome sequencing of the Arabidopsis thaliana MAGIC founder accessions
10.2 -4.4 -2.3 SRP277946 SRR12470084 RNA-seq of Arabidopsis thaliana roots exposed to the MAMP flg22 in the presence of individual commensal bacteria [MAE]
10.1 -3.0 -3.3 SRP187455 SRR8666073 Transcriptome analysis using RNA sequencing conducted for wild type (Col-0) and a stable transgenic line with ectopic expression of AT3G11290 (35S:HIN1) under control conditions and after 96 hours at moderate low water potential stress (-0.7 MPa)
10.1 -4.3 -2.4 SRP017386 SRR627682 Transcriptome-wide analysis of gene expression in dark-grown WT and pif mutant seedlings
10.1 5.8 1.7 SRP097877 SRR5205698 An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana
10.0 3.3 3.0 SRP125388 SRR6312367 Transcriptome dynamics at Arabidopsis graft junctions reveal an intertissue recognition mechanism that activates vascular regeneration
10.0 3.1 3.3 SRP199288 SRR9113103 In Arabidopsis hybrids and Hybrid Mimics up-regulation of cell wall biogenesis is associated with increased plant size
Note: Samples whose contribution is more than 10 are outputted.



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