cis; AAGGCCC

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
no correspondence

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of AAGGCCC

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of AAGGCCC.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.69At1g71260expressed protein WHIRLY
0.66At4g3093050S ribosomal protein L21, mitochondrial (RPL21M) ((WRKY32)) WRKY
0.62At1g14410DNA-binding protein-related WHIRLY
0.61At3g52910expressed protein GRF
-0.60At1g08320bZIP family transcription factor bZIP
-0.60At3g52800zinc finger (AN1-like) family protein C2H2
0.58At5g16070chaperonin, putative TCP
0.56At3g57150dyskerin, putative / nucleolar protein NAP57, putative ((NAP57)) NAC
-0.56At5g66070zinc finger (C3HC4-type RING finger) family protein C3H
-0.56At3g19580zinc finger (C2H2 type) protein 2 (AZF2) ((AZF2)) C2H2
-0.55At5g04340zinc finger (C2H2 type) family protein ((C2H2)) C2H2
-0.54At5g67300myb family transcription factor MYB
-0.54At1g19310zinc finger (C3HC4-type RING finger) family protein C3H
0.53At3g22780CXC domain protein (TSO1) ((TSO1)) CPP
-0.53At5g49520WRKY family transcription factor ((WRKY48)) WRKY

link to other 304 cis elements in ATTED

similar seq.
←AAGGCCC→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; GGGCCTT
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
AAGGCCC1.000.0884
AGGCCCA0.990.1186
GGCCCAA0.980.0962
GGCCCAT0.980.1183
GCCCAAT0.980.0874
GCCCATA0.980.0881
AATGGGC0.970.0988
ATGGGCC0.970.0987
TGGGCCT0.970.1096
TGGGCTT0.970.0992