cis; GGGCCTT

Correspondence to reported cis elements* on sequence level (perfect match)

reported seqreported namereference
GGGCC   SORLIP2AT [ref]

CEG profile for position preference

CEG profile for exprimental conditions


Red circles indicate absolute CEG value > 0.06. Experimental condition pop up when the mouse is over a sample of red circle.

Analysis of functional categories (BP or CC*) related to presence of GGGCCTT

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GO IDterm-Log(p)number of
{A; genes in a GO}		numver of
{B; genes with this heptamer}		{A} x {B}
no functional bias detected

List of predicted TFs whose mRNA profiles are correlated (|r| > 0.4, up to 15 TFs) with CEG profile of GGGCCTT.

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correlTFfunction ((alias))*TF family
(link to AGRIS)
0.70At4g3093050S ribosomal protein L21, mitochondrial (RPL21M) ((WRKY32)) WRKY
0.68At1g71260expressed protein WHIRLY
0.62At1g14410DNA-binding protein-related WHIRLY
0.61At3g52910expressed protein GRF
0.61At3g57150dyskerin, putative / nucleolar protein NAP57, putative ((NAP57)) NAC
0.58At5g16070chaperonin, putative TCP
-0.57At3g52800zinc finger (AN1-like) family protein C2H2
-0.56At1g08320bZIP family transcription factor bZIP
-0.55At3g02340zinc finger (C3HC4-type RING finger) family protein C3H
-0.55At3g19580zinc finger (C2H2 type) protein 2 (AZF2) ((AZF2)) C2H2
-0.55At5g67300myb family transcription factor MYB
-0.54At4g27410no apical meristem (NAM) family protein (RD26) ((RD26)) NAC
0.53At1g27050homeobox-leucine zipper family protein Homeobox
-0.52At5g04340zinc finger (C2H2 type) family protein ((C2H2)) C2H2
0.51At5g02470DP-2 transcription factor, putative (DPA) ((DPA)) E2F-DP

link to other 304 cis elements in ATTED

similar seq.
←GGGCCTT→
AAAAAAAAA
CCCCCCCCC
GGGGGGGGG
TTTTTTTTT

complimentary; AAGGCCC
cis with similar CEG profile
similar cisCEG correlmaxCEGbest position
GGGCCTT1.000.0796
TGGGCCT0.990.1096
TGGGCTT0.980.0992
TTGGGCC0.980.0998
ATGGGCC0.970.0987
AATGGGC0.970.0988
ATGGGCT0.970.08100
GGCCCAT0.970.1183
GGGCTTT0.970.0790
AAGCCCA0.970.1084